Wall clock time and date at job start Tue Mar 31 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47041 * 2 1 4 4 H 1.08995 * 109.47148 * 304.99700 * 3 2 1 5 5 C 1.50700 * 109.46919 * 185.00005 * 3 2 1 6 6 H 1.08000 * 119.99858 * 240.00143 * 5 3 2 7 7 C 1.37878 * 120.00326 * 59.99778 * 5 3 2 8 8 N 1.31518 * 119.99699 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46862 * 60.00046 * 9 7 5 11 11 H 1.48496 * 109.47318 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46860 * 300.00338 * 9 7 5 13 13 N 1.46501 * 109.46990 * 65.00046 * 3 2 1 14 14 C 1.34768 * 119.99838 * 274.99467 * 13 3 2 15 15 O 1.21616 * 120.00224 * 0.02562 * 14 13 3 16 16 C 1.47421 * 120.00030 * 180.02562 * 14 13 3 17 17 N 1.36071 * 126.44773 * 359.97438 * 16 14 13 18 18 C 1.29937 * 108.47675 * 180.02562 * 17 16 14 19 19 C 1.50702 * 125.37660 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.47443 * 119.99632 * 19 18 17 21 21 C 1.52998 * 109.46683 * 239.99641 * 19 18 17 22 22 O 1.34045 * 109.24424 * 359.97438 * 18 17 16 23 23 C 1.34254 * 108.22707 * 0.02562 * 22 18 17 24 24 C 1.50705 * 126.52457 * 179.73775 * 23 22 18 25 25 H 1.09008 * 109.47365 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47354 * 299.99814 * 1 2 3 27 27 H 1.09001 * 109.47340 * 60.00015 * 1 2 3 28 28 H 1.09003 * 109.47151 * 239.99672 * 2 1 3 29 29 H 1.09006 * 109.47032 * 120.00307 * 2 1 3 30 30 H 0.97001 * 120.00058 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99899 * 95.00030 * 13 3 2 32 32 H 1.09004 * 109.46678 * 359.97438 * 19 18 17 33 33 H 1.08995 * 109.47171 * 300.00161 * 20 19 18 34 34 H 1.09004 * 109.46805 * 59.99901 * 20 19 18 35 35 H 1.08996 * 109.46981 * 179.97438 * 20 19 18 36 36 H 1.09009 * 109.47171 * 59.99917 * 21 19 18 37 37 H 1.08999 * 109.46972 * 179.97438 * 21 19 18 38 38 H 1.08994 * 109.47401 * 300.00016 * 21 19 18 39 39 H 1.08996 * 109.46974 * 0.02562 * 24 23 22 40 40 H 1.09000 * 109.47181 * 120.02845 * 24 23 22 41 41 H 1.09001 * 109.46790 * 240.02423 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2348 11 1 6.3977 0.2176 -2.6509 12 1 6.4994 2.2814 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3417 2.6319 0.4318 16 6 0.0453 3.3239 2.6264 17 7 0.8058 3.4362 3.7492 18 6 0.1219 4.0801 4.6470 19 6 0.6030 4.4164 6.0350 20 6 0.5999 5.9348 6.2220 21 6 -0.3263 3.7735 7.0665 22 8 -1.0787 4.3989 4.1433 23 6 -1.1429 3.9349 2.8851 24 6 -2.3108 4.0612 1.9410 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0605 -2.9502 31 1 2.2719 2.1231 1.9978 32 1 1.6152 4.0353 6.1709 33 1 1.2618 6.3928 5.4871 34 1 -0.4125 6.3155 6.0862 35 1 0.9474 6.1780 7.2261 36 1 -0.3240 2.6916 6.9333 37 1 0.0219 4.0163 8.0704 38 1 -1.3386 4.1542 6.9307 39 1 -3.1208 4.5978 2.4349 40 1 -2.0011 4.6095 1.0513 41 1 -2.6550 3.0676 1.6540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285986878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:05 Heat of formation + Delta-G solvation = -39.526515 kcal Electronic energy + Delta-G solvation = -22335.725193 eV Core-core repulsion = 19023.655463 eV Total energy + Delta-G solvation = -3312.069729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.29576 -38.81256 -35.94830 -35.08011 -34.53498 -32.30101 -31.78936 -30.83392 -27.53317 -27.50542 -26.56293 -23.88827 -22.95130 -22.33682 -21.04392 -19.66954 -19.26187 -17.59423 -16.80909 -16.28311 -15.79559 -15.24822 -14.93985 -14.57417 -14.38776 -14.16937 -13.56360 -13.48640 -13.06939 -12.85588 -12.63957 -12.49632 -12.47098 -12.07290 -11.85891 -11.59205 -11.50272 -11.31408 -11.21430 -10.98472 -10.94184 -10.77445 -10.56695 -10.30198 -10.13970 -9.60680 -9.21042 -9.01260 -8.59875 -8.45907 -7.75828 -6.08489 -4.17226 1.33557 2.29546 2.56478 3.29399 3.33921 3.35995 3.75828 3.97632 4.15064 4.41829 4.54512 4.74330 4.86093 4.94560 5.22687 5.24454 5.29526 5.39624 5.41587 5.47938 5.61386 5.61418 5.68046 5.89935 5.91411 5.99789 6.13315 6.31620 6.42056 6.49178 6.68863 7.08544 7.21217 7.39143 7.46892 7.60469 7.69586 7.82013 7.95061 8.20962 8.72999 8.80739 9.14395 9.49616 10.96973 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.004482 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.899458 B = 6245.234952 C = 7108.898782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.584 3.416 15 O -0.544 6.544 16 C -0.062 4.062 17 N -0.453 5.453 18 C 0.187 3.813 19 C 0.005 3.995 20 C -0.149 4.149 21 C -0.149 4.149 22 O -0.199 6.199 23 C 0.021 3.979 24 C -0.061 4.061 25 H 0.023 0.977 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.397 0.603 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 7.957 15.705 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.333 5.333 14 C 0.368 3.632 15 O -0.424 6.424 16 C -0.182 4.182 17 N -0.182 5.182 18 C -0.022 4.022 19 C -0.014 4.014 20 C -0.207 4.207 21 C -0.207 4.207 22 O -0.086 6.086 23 C -0.034 4.034 24 C -0.117 4.117 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.297 7.581 14.894 18.659 hybrid contribution 0.727 0.175 0.188 0.771 sum -7.570 7.756 15.083 18.573 Atomic orbital electron populations 1.21841 0.98389 0.98052 1.01162 1.21939 0.92618 0.99716 1.02365 1.18851 0.94355 0.89232 0.80738 0.93120 1.21206 0.90665 1.38972 1.06307 0.92072 1.24869 0.98603 0.94782 0.95336 1.69886 1.35182 1.37693 1.09329 0.86506 0.84878 0.78315 0.77398 1.20139 1.21144 1.20199 1.46358 1.14040 1.54215 1.18726 1.16715 0.83368 0.78989 0.84131 1.90761 1.51906 1.61087 1.38638 1.22024 0.92674 1.07397 0.96128 1.70783 1.31435 1.16212 0.99806 1.26085 0.80165 0.97965 0.97972 1.19719 1.00896 0.97526 0.83295 1.21890 1.02973 0.93138 1.02735 1.21891 0.99453 1.01288 0.98092 1.84238 1.36620 1.62198 1.25548 1.23695 0.98937 0.97573 0.83243 1.20376 0.91386 1.04875 0.95097 0.95831 0.94414 0.93040 0.88152 0.94988 0.92545 0.77004 0.86803 0.91836 0.91918 0.90942 0.91867 0.90944 0.91915 0.90950 0.88350 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.19 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 7.02 2.24 -69.08 -0.15 6.86 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.52 8.73 -34.44 -0.30 -14.82 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.96 11.29 55.43 0.63 -24.34 16 9 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.69 -15.70 5.02 -56.01 -0.28 -15.98 16 14 C 0.58 12.69 6.38 -12.53 -0.08 12.61 16 15 O -0.54 -12.60 12.74 5.26 0.07 -12.54 16 16 C -0.06 -1.15 6.99 -83.02 -0.58 -1.73 16 17 N -0.45 -7.86 11.06 -7.65 -0.08 -7.94 16 18 C 0.19 2.63 6.81 -13.08 -0.09 2.55 16 19 C 0.00 0.05 3.39 -91.77 -0.31 -0.26 16 20 C -0.15 -1.17 9.18 37.16 0.34 -0.82 16 21 C -0.15 -1.15 9.17 37.16 0.34 -0.81 16 22 O -0.20 -2.85 10.73 6.53 0.07 -2.78 16 23 C 0.02 0.34 7.44 -35.08 -0.26 0.08 16 24 C -0.06 -0.77 9.13 36.01 0.33 -0.44 16 25 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.40 8.60 8.27 -40.82 -0.34 8.26 16 32 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.29 8.08 -51.93 -0.42 0.87 16 41 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -30.80 339.31 -6.55 -37.34 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.35 Total: 6.35 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.69 Total: -1.21 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.26 Total: -48.26 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.14 Total: -15.32 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.80 -6.55 -37.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285986878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.182 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds