Wall clock time and date at job start Tue Mar 31 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47041 * 2 1 4 4 H 1.08995 * 109.47148 * 304.99700 * 3 2 1 5 5 C 1.50700 * 109.46919 * 185.00005 * 3 2 1 6 6 H 1.08000 * 119.99858 * 240.00143 * 5 3 2 7 7 C 1.37878 * 120.00326 * 59.99778 * 5 3 2 8 8 N 1.31518 * 119.99699 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46862 * 60.00046 * 9 7 5 11 11 H 1.48496 * 109.47318 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46860 * 300.00338 * 9 7 5 13 13 N 1.46501 * 109.46990 * 65.00046 * 3 2 1 14 14 C 1.34768 * 119.99838 * 274.99467 * 13 3 2 15 15 O 1.21616 * 120.00224 * 0.02562 * 14 13 3 16 16 C 1.47421 * 120.00030 * 180.02562 * 14 13 3 17 17 N 1.36071 * 126.44773 * 359.97438 * 16 14 13 18 18 C 1.29937 * 108.47675 * 180.02562 * 17 16 14 19 19 C 1.50702 * 125.37660 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.47443 * 119.99632 * 19 18 17 21 21 C 1.52998 * 109.46683 * 239.99641 * 19 18 17 22 22 O 1.34045 * 109.24424 * 359.97438 * 18 17 16 23 23 C 1.34254 * 108.22707 * 0.02562 * 22 18 17 24 24 C 1.50705 * 126.52457 * 179.73775 * 23 22 18 25 25 H 1.09008 * 109.47365 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47354 * 299.99814 * 1 2 3 27 27 H 1.09001 * 109.47340 * 60.00015 * 1 2 3 28 28 H 1.09003 * 109.47151 * 239.99672 * 2 1 3 29 29 H 1.09006 * 109.47032 * 120.00307 * 2 1 3 30 30 H 0.97001 * 120.00058 * 179.97438 * 8 7 5 31 31 H 0.96998 * 119.99899 * 95.00030 * 13 3 2 32 32 H 1.09004 * 109.46678 * 359.97438 * 19 18 17 33 33 H 1.08995 * 109.47171 * 300.00161 * 20 19 18 34 34 H 1.09004 * 109.46805 * 59.99901 * 20 19 18 35 35 H 1.08996 * 109.46981 * 179.97438 * 20 19 18 36 36 H 1.09009 * 109.47171 * 59.99917 * 21 19 18 37 37 H 1.08999 * 109.46972 * 179.97438 * 21 19 18 38 38 H 1.08994 * 109.47401 * 300.00016 * 21 19 18 39 39 H 1.08996 * 109.46974 * 0.02562 * 24 23 22 40 40 H 1.09000 * 109.47181 * 120.02845 * 24 23 22 41 41 H 1.09001 * 109.46790 * 240.02423 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8811 -1.3818 10 1 6.5975 0.1472 -0.2348 11 1 6.3977 0.2176 -2.6509 12 1 6.4994 2.2814 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3417 2.6319 0.4318 16 6 0.0453 3.3239 2.6264 17 7 0.8058 3.4362 3.7492 18 6 0.1219 4.0801 4.6470 19 6 0.6030 4.4164 6.0350 20 6 0.5999 5.9348 6.2220 21 6 -0.3263 3.7735 7.0665 22 8 -1.0787 4.3989 4.1433 23 6 -1.1429 3.9349 2.8851 24 6 -2.3108 4.0612 1.9410 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0605 -2.9502 31 1 2.2719 2.1231 1.9978 32 1 1.6152 4.0353 6.1709 33 1 1.2618 6.3928 5.4871 34 1 -0.4125 6.3155 6.0862 35 1 0.9474 6.1780 7.2261 36 1 -0.3240 2.6916 6.9333 37 1 0.0219 4.0163 8.0704 38 1 -1.3386 4.1542 6.9307 39 1 -3.1208 4.5978 2.4349 40 1 -2.0011 4.6095 1.0513 41 1 -2.6550 3.0676 1.6540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285986878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:05 Heat of formation + Delta-G solvation = -61.121742 kcal Electronic energy + Delta-G solvation = -22336.661632 eV Core-core repulsion = 19023.655463 eV Total energy + Delta-G solvation = -3313.006169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.51771 -40.57995 -37.06710 -36.69602 -35.81939 -34.28572 -32.93706 -32.75084 -29.28199 -28.09593 -28.03562 -25.47157 -24.58757 -23.51064 -22.44130 -21.32870 -20.92644 -19.20227 -18.03403 -17.93242 -17.25140 -16.94703 -16.22012 -16.17135 -16.01460 -15.32649 -14.88076 -14.66087 -14.48850 -14.33735 -13.92517 -13.76543 -13.51885 -13.42859 -13.18596 -13.03854 -12.93706 -12.67787 -12.60030 -12.42677 -12.20870 -12.13438 -12.07582 -11.97559 -11.81720 -11.61122 -11.09941 -10.95917 -10.54509 -9.92472 -9.60349 -8.17709 -6.34993 0.05326 1.00116 1.42021 1.43793 1.45670 1.53626 2.29566 2.35707 2.49443 2.86055 3.11301 3.57810 3.82236 3.92963 4.06524 4.16961 4.25278 4.44343 4.47832 4.54983 4.57251 4.72353 4.77140 4.80810 4.88362 4.90911 4.98998 5.03792 5.08748 5.14375 5.23470 5.31163 5.31947 5.41100 5.51210 5.57632 5.75906 5.86741 6.13307 6.44402 6.69896 6.92128 7.27578 7.44236 8.87610 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020213 B = 0.004482 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.899458 B = 6245.234952 C = 7108.898782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.554 4.554 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.970 3.030 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.691 5.691 14 C 0.584 3.416 15 O -0.565 6.565 16 C -0.101 4.101 17 N -0.485 5.485 18 C 0.202 3.798 19 C 0.002 3.998 20 C -0.145 4.145 21 C -0.145 4.145 22 O -0.190 6.190 23 C 0.038 3.962 24 C -0.061 4.061 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.267 0.733 31 H 0.401 0.599 32 H 0.119 0.881 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 8.778 18.038 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.592 4.592 6 H 0.082 0.918 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.795 3.205 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.338 5.338 14 C 0.370 3.630 15 O -0.446 6.446 16 C -0.220 4.220 17 N -0.214 5.214 18 C -0.008 4.008 19 C -0.017 4.017 20 C -0.203 4.203 21 C -0.202 4.202 22 O -0.077 6.077 23 C -0.019 4.019 24 C -0.117 4.117 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.236 0.764 32 H 0.137 0.863 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.395 8.406 17.246 20.941 hybrid contribution 0.693 -0.018 -0.469 0.837 sum -7.702 8.388 16.777 20.277 Atomic orbital electron populations 1.21671 0.96672 0.99346 1.00305 1.21788 0.94082 0.98837 1.01247 1.18484 0.93836 0.89357 0.80733 0.97530 1.21497 0.91387 1.39457 1.06840 0.91815 1.25722 1.03373 0.94134 0.94799 1.70021 1.37115 1.38048 1.09736 0.85428 0.78995 0.78429 0.77668 1.19124 1.20636 1.19804 1.46166 1.14907 1.54891 1.17819 1.17054 0.82523 0.78325 0.85109 1.90732 1.52273 1.61779 1.39859 1.21617 0.94570 1.10039 0.95766 1.70731 1.32374 1.18171 1.00142 1.27123 0.79355 0.95566 0.98759 1.20093 1.01449 0.99126 0.81050 1.21892 1.02972 0.91291 1.04117 1.21891 0.99151 1.00349 0.98837 1.84291 1.36763 1.61875 1.24798 1.24127 0.98538 0.95439 0.83757 1.20505 0.91398 1.05164 0.94608 0.93352 0.94350 0.94707 0.90428 0.94663 0.92396 0.76447 0.86316 0.93056 0.91743 0.88027 0.92963 0.88048 0.91744 0.87173 0.88843 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.20 5.45 30.59 0.17 -6.03 16 3 C 0.28 15.08 2.24 44.24 0.10 15.18 16 4 H 0.01 0.42 7.58 -2.39 -0.02 0.41 16 5 C -0.55 -30.87 8.73 25.60 0.22 -30.65 16 6 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.12 5.29 84.65 0.45 1.57 16 8 N -0.91 -52.66 11.29 21.45 0.24 -52.42 16 9 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 N -0.69 -32.68 5.02 -449.38 -2.25 -34.94 16 14 C 0.58 26.14 6.38 86.66 0.55 26.69 16 15 O -0.57 -27.09 12.74 -4.08 -0.05 -27.15 16 16 C -0.10 -3.81 6.99 40.41 0.28 -3.53 16 17 N -0.49 -16.75 11.06 -293.03 -3.24 -19.99 16 18 C 0.20 5.41 6.81 88.39 0.60 6.01 16 19 C 0.00 0.03 3.39 -11.54 -0.04 0.00 16 20 C -0.14 -1.85 9.18 71.98 0.66 -1.18 16 21 C -0.14 -1.81 9.17 71.98 0.66 -1.15 16 22 O -0.19 -5.11 10.73 0.45 0.00 -5.10 16 23 C 0.04 1.17 7.44 25.19 0.19 1.36 16 24 C -0.06 -1.46 9.13 71.24 0.65 -0.81 16 25 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.04 1.74 5.64 -2.39 -0.01 1.73 16 27 H 0.03 1.69 7.84 -2.39 -0.02 1.67 16 28 H 0.08 4.36 5.95 -2.39 -0.01 4.35 16 29 H 0.03 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.40 17.97 8.27 -92.71 -0.77 17.21 16 32 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 2.39 8.08 -2.39 -0.02 2.38 16 41 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 Total: -1.00 -68.32 339.31 2.10 -66.22 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.26 Total: 25.71 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.11 Total: 2.41 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -5.25 Total: -107.35 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.32 2.10 -66.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285986878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.102 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds