Wall clock time and date at job start Tue Mar 31 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52986 * 1 3 3 C 1.53001 * 109.47432 * 2 1 4 4 H 1.08997 * 109.47056 * 54.99724 * 3 2 1 5 5 C 1.53002 * 109.47446 * 175.00072 * 3 2 1 6 6 N 1.46501 * 109.46592 * 294.99578 * 3 2 1 7 7 C 1.47317 * 126.68663 * 120.00177 * 6 3 2 8 8 C 1.51582 * 103.59053 * 179.97438 * 7 6 3 9 9 O 1.21237 * 127.15340 * 180.02562 * 8 7 6 10 10 N 1.34759 * 105.68809 * 359.97438 * 8 7 6 11 11 C 1.46505 * 124.18144 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47093 * 95.29860 * 11 10 8 13 13 C 1.50692 * 115.56256 * 91.02106 * 12 11 10 14 14 H 1.08005 * 120.00151 * 219.84724 * 13 12 11 15 15 C 1.37874 * 120.00084 * 39.85107 * 13 12 11 16 16 N 1.31512 * 120.00189 * 11.56571 * 15 13 12 17 17 Si 1.86805 * 120.00052 * 191.56930 * 15 13 12 18 18 H 1.48493 * 109.47161 * 59.99515 * 17 15 13 19 19 H 1.48500 * 109.47172 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47172 * 299.99582 * 17 15 13 21 21 C 1.53002 * 117.49789 * 305.33207 * 12 11 10 22 22 C 1.52995 * 60.00149 * 252.51114 * 21 12 11 23 23 C 1.33790 * 111.64569 * 0.22711 * 10 8 7 24 24 O 1.21538 * 123.77670 * 179.76524 * 23 10 8 25 25 H 1.08998 * 109.47338 * 300.00501 * 1 2 3 26 26 H 1.08998 * 109.47326 * 60.00224 * 1 2 3 27 27 H 1.09003 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47338 * 239.99499 * 2 1 3 29 29 H 1.09008 * 109.47310 * 119.99959 * 2 1 3 30 30 H 1.09001 * 109.46593 * 299.99924 * 5 3 2 31 31 H 1.09001 * 109.46819 * 59.99604 * 5 3 2 32 32 H 1.08995 * 109.47205 * 179.97438 * 5 3 2 33 33 H 1.09001 * 110.60184 * 61.43447 * 7 6 3 34 34 H 1.09000 * 110.73037 * 298.55282 * 7 6 3 35 35 H 1.08999 * 109.46545 * 335.30053 * 11 10 8 36 36 H 1.08993 * 109.47486 * 215.29942 * 11 10 8 37 37 H 0.96998 * 120.00654 * 174.99922 * 16 15 13 38 38 H 1.08999 * 117.50241 * 145.02034 * 21 12 11 39 39 H 1.08999 * 117.50119 * 0.02562 * 21 12 11 40 40 H 1.09004 * 117.50227 * 107.49146 * 22 21 12 41 41 H 1.08998 * 117.50298 * 252.48702 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0973 -1.2519 7 6 0.8095 3.2972 -1.3933 8 6 0.7483 3.5150 -2.8921 9 8 0.1598 4.3965 -3.4806 10 7 1.4852 2.5255 -3.4345 11 6 1.6978 2.3516 -4.8735 12 6 3.0160 3.0146 -5.2780 13 6 4.2314 2.1249 -5.2348 14 1 5.1713 2.5119 -4.8695 15 6 4.1438 0.8168 -5.6617 16 7 3.0773 0.4078 -6.3134 17 14 5.5401 -0.3745 -5.3143 18 1 5.7402 -0.4885 -3.8473 19 1 5.2029 -1.7086 -5.8726 20 1 6.7870 0.1263 -5.9465 21 6 3.2061 4.4886 -4.9144 22 6 2.9624 4.0850 -6.3700 23 6 1.9941 1.7183 -2.4967 24 8 2.6895 0.7522 -2.7417 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8531 0.9570 1.0571 31 1 3.9993 0.9052 -0.7161 32 1 3.9282 2.4719 0.1252 33 1 1.2729 4.1517 -0.9000 34 1 -0.1875 3.1180 -0.9909 35 1 0.8759 2.8134 -5.4206 36 1 1.7388 1.2882 -5.1089 37 1 3.0459 -0.4909 -6.6769 38 1 4.2104 4.8148 -4.6440 39 1 2.3923 4.9858 -4.3867 40 1 1.9881 4.3169 -6.8002 41 1 3.8063 4.1460 -7.0572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348667630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:36 Heat of formation + Delta-G solvation = -14.675237 kcal Electronic energy + Delta-G solvation = -23826.427936 eV Core-core repulsion = 20515.435839 eV Total energy + Delta-G solvation = -3310.992097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68688 -38.19935 -36.92426 -35.90934 -35.11570 -32.48482 -32.08993 -30.08196 -27.19195 -26.43122 -25.33598 -23.75832 -22.24834 -21.45057 -21.11927 -19.45311 -18.58348 -16.96273 -16.71079 -15.92412 -15.82999 -15.31798 -14.66109 -14.39581 -14.32992 -13.73043 -13.67173 -13.48323 -13.32563 -13.20465 -13.08144 -12.53294 -12.15861 -11.75515 -11.70447 -11.25769 -11.20108 -10.97487 -10.93418 -10.87345 -10.64492 -10.39763 -10.31660 -10.02277 -9.81887 -9.38490 -8.94323 -8.77383 -8.61702 -8.46676 -8.06049 -6.00083 -4.00170 2.21875 2.68363 3.38613 3.43362 3.50945 3.51442 3.83886 4.48659 4.50365 4.74576 5.01937 5.08785 5.09512 5.22464 5.28485 5.35172 5.58794 5.60049 5.63056 5.72290 5.90934 5.92491 6.06415 6.11606 6.19070 6.31981 6.37360 6.39872 6.45598 6.63590 6.70798 6.82920 6.95651 7.01173 7.14799 7.38238 7.53773 7.90866 8.02453 8.04009 8.45633 8.89901 8.93991 9.61257 11.05065 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.008705 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.183878 B = 3215.797659 C = 4380.110430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.187 3.813 4 H 0.088 0.912 5 C -0.171 4.171 6 N -0.635 5.635 7 C 0.063 3.937 8 C 0.513 3.487 9 O -0.492 6.492 10 N -0.554 5.554 11 C 0.140 3.860 12 C 0.041 3.959 13 C -0.480 4.480 14 H 0.056 0.944 15 C 0.087 3.913 16 N -0.884 5.884 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.282 1.282 21 C -0.209 4.209 22 C -0.191 4.191 23 C 0.698 3.302 24 O -0.505 6.505 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.145 0.855 37 H 0.263 0.737 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 1.535 13.727 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.085 3.915 4 H 0.106 0.894 5 C -0.229 4.229 6 N -0.377 5.377 7 C -0.064 4.064 8 C 0.301 3.699 9 O -0.365 6.365 10 N -0.297 5.297 11 C 0.022 3.978 12 C 0.039 3.961 13 C -0.517 4.517 14 H 0.074 0.926 15 C -0.116 4.116 16 N -0.522 5.522 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.208 1.208 21 C -0.247 4.247 22 C -0.229 4.229 23 C 0.400 3.600 24 O -0.375 6.375 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.257 1.160 13.244 14.296 hybrid contribution 0.703 -0.335 0.118 0.788 sum -4.554 0.825 13.362 14.141 Atomic orbital electron populations 1.21706 0.95775 1.01522 1.01388 1.22005 0.96211 0.96304 1.03756 1.20790 0.95231 0.92752 0.82681 0.89379 1.22222 0.94878 1.02715 1.03096 1.47798 1.54364 1.29837 1.05686 1.22387 0.97876 0.90554 0.95573 1.20815 0.78086 0.81209 0.89834 1.90740 1.43277 1.32843 1.69608 1.46651 1.45920 1.26422 1.10675 1.21883 0.95863 1.07818 0.72275 1.19230 0.94423 0.85760 0.96653 1.20344 0.93890 0.94668 1.42781 0.92592 1.24764 0.95752 0.97557 0.93496 1.69624 1.28395 1.19066 1.35087 0.86576 0.81721 0.80014 0.79177 1.19706 1.21404 1.20841 1.22850 1.00007 1.02374 0.99429 1.22979 1.00126 1.08781 0.91035 1.15874 0.80466 0.83221 0.80432 1.90985 1.37730 1.26868 1.81895 0.93124 0.92833 0.92829 0.89735 0.90935 0.91664 0.90328 0.92385 0.87271 0.87388 0.92160 0.83812 0.92643 0.90879 0.91275 0.91569 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.80 37.15 0.36 -1.21 16 2 C -0.14 -1.74 5.38 -26.74 -0.14 -1.88 16 3 C 0.19 2.25 2.97 -67.93 -0.20 2.04 16 4 H 0.09 0.78 8.12 -51.93 -0.42 0.35 16 5 C -0.17 -2.19 9.23 37.16 0.34 -1.84 16 6 N -0.63 -9.50 2.34 -172.38 -0.40 -9.90 16 7 C 0.06 0.81 7.65 -4.31 -0.03 0.78 16 8 C 0.51 9.28 7.47 -10.56 -0.08 9.20 16 9 O -0.49 -9.91 16.93 5.59 0.09 -9.81 16 10 N -0.55 -11.58 2.42 -120.73 -0.29 -11.87 16 11 C 0.14 3.38 5.44 -4.04 -0.02 3.36 16 12 C 0.04 1.03 1.98 -155.66 -0.31 0.72 16 13 C -0.48 -13.33 9.01 -34.45 -0.31 -13.64 16 14 H 0.06 1.58 7.84 -52.48 -0.41 1.17 16 15 C 0.09 2.40 5.15 -17.82 -0.09 2.31 16 16 N -0.88 -24.75 10.90 55.43 0.60 -24.15 16 17 Si 0.90 22.28 29.56 -169.99 -5.02 17.26 16 18 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.21 -4.81 9.65 -26.73 -0.26 -5.06 16 22 C -0.19 -4.51 9.88 -26.73 -0.26 -4.77 16 23 C 0.70 14.13 7.77 -88.02 -0.68 13.45 16 24 O -0.51 -12.09 14.90 5.33 0.08 -12.01 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.66 7.75 -51.93 -0.40 0.26 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.33 6.80 -51.93 -0.35 0.98 16 29 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.32 6.97 -51.93 -0.36 0.95 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.42 7.63 -51.93 -0.40 1.02 16 36 H 0.14 3.87 5.12 -51.93 -0.27 3.60 16 37 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 38 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.54 6.55 -51.93 -0.34 1.20 16 40 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 41 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -31.28 336.14 -7.87 -39.16 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.31 Total: 2.81 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.69 Total: 3.45 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.09 Total: -45.92 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.17 Total: -21.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.28 -7.87 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348667630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.482 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds