Wall clock time and date at job start Tue Mar 31 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52986 * 1 3 3 C 1.53001 * 109.47432 * 2 1 4 4 H 1.08997 * 109.47056 * 54.99724 * 3 2 1 5 5 C 1.53002 * 109.47446 * 175.00072 * 3 2 1 6 6 N 1.46501 * 109.46592 * 294.99578 * 3 2 1 7 7 C 1.47317 * 126.68663 * 120.00177 * 6 3 2 8 8 C 1.51582 * 103.59053 * 179.97438 * 7 6 3 9 9 O 1.21237 * 127.15340 * 180.02562 * 8 7 6 10 10 N 1.34759 * 105.68809 * 359.97438 * 8 7 6 11 11 C 1.46505 * 124.18144 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47093 * 95.29860 * 11 10 8 13 13 C 1.50692 * 115.56256 * 91.02106 * 12 11 10 14 14 H 1.08005 * 120.00151 * 219.84724 * 13 12 11 15 15 C 1.37874 * 120.00084 * 39.85107 * 13 12 11 16 16 N 1.31512 * 120.00189 * 11.56571 * 15 13 12 17 17 Si 1.86805 * 120.00052 * 191.56930 * 15 13 12 18 18 H 1.48493 * 109.47161 * 59.99515 * 17 15 13 19 19 H 1.48500 * 109.47172 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47172 * 299.99582 * 17 15 13 21 21 C 1.53002 * 117.49789 * 305.33207 * 12 11 10 22 22 C 1.52995 * 60.00149 * 252.51114 * 21 12 11 23 23 C 1.33790 * 111.64569 * 0.22711 * 10 8 7 24 24 O 1.21538 * 123.77670 * 179.76524 * 23 10 8 25 25 H 1.08998 * 109.47338 * 300.00501 * 1 2 3 26 26 H 1.08998 * 109.47326 * 60.00224 * 1 2 3 27 27 H 1.09003 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47338 * 239.99499 * 2 1 3 29 29 H 1.09008 * 109.47310 * 119.99959 * 2 1 3 30 30 H 1.09001 * 109.46593 * 299.99924 * 5 3 2 31 31 H 1.09001 * 109.46819 * 59.99604 * 5 3 2 32 32 H 1.08995 * 109.47205 * 179.97438 * 5 3 2 33 33 H 1.09001 * 110.60184 * 61.43447 * 7 6 3 34 34 H 1.09000 * 110.73037 * 298.55282 * 7 6 3 35 35 H 1.08999 * 109.46545 * 335.30053 * 11 10 8 36 36 H 1.08993 * 109.47486 * 215.29942 * 11 10 8 37 37 H 0.96998 * 120.00654 * 174.99922 * 16 15 13 38 38 H 1.08999 * 117.50241 * 145.02034 * 21 12 11 39 39 H 1.08999 * 117.50119 * 0.02562 * 21 12 11 40 40 H 1.09004 * 117.50227 * 107.49146 * 22 21 12 41 41 H 1.08998 * 117.50298 * 252.48702 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0973 -1.2519 7 6 0.8095 3.2972 -1.3933 8 6 0.7483 3.5150 -2.8921 9 8 0.1598 4.3965 -3.4806 10 7 1.4852 2.5255 -3.4345 11 6 1.6978 2.3516 -4.8735 12 6 3.0160 3.0146 -5.2780 13 6 4.2314 2.1249 -5.2348 14 1 5.1713 2.5119 -4.8695 15 6 4.1438 0.8168 -5.6617 16 7 3.0773 0.4078 -6.3134 17 14 5.5401 -0.3745 -5.3143 18 1 5.7402 -0.4885 -3.8473 19 1 5.2029 -1.7086 -5.8726 20 1 6.7870 0.1263 -5.9465 21 6 3.2061 4.4886 -4.9144 22 6 2.9624 4.0850 -6.3700 23 6 1.9941 1.7183 -2.4967 24 8 2.6895 0.7522 -2.7417 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8531 0.9570 1.0571 31 1 3.9993 0.9052 -0.7161 32 1 3.9282 2.4719 0.1252 33 1 1.2729 4.1517 -0.9000 34 1 -0.1875 3.1180 -0.9909 35 1 0.8759 2.8134 -5.4206 36 1 1.7388 1.2882 -5.1089 37 1 3.0459 -0.4909 -6.6769 38 1 4.2104 4.8148 -4.6440 39 1 2.3923 4.9858 -4.3867 40 1 1.9881 4.3169 -6.8002 41 1 3.8063 4.1460 -7.0572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348667630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:36 Heat of formation + Delta-G solvation = -32.808249 kcal Electronic energy + Delta-G solvation = -23827.214243 eV Core-core repulsion = 20515.435839 eV Total energy + Delta-G solvation = -3311.778404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.11686 -39.63677 -38.64999 -37.32318 -36.59777 -34.20196 -33.78246 -31.06588 -28.58237 -28.03210 -27.36013 -24.80910 -23.50333 -23.08370 -22.70540 -21.19360 -20.08417 -18.63636 -18.09248 -17.53564 -17.29379 -16.70578 -16.56276 -15.99977 -15.70769 -15.32094 -14.98933 -14.96626 -14.68718 -14.43028 -14.22601 -13.88978 -13.60077 -13.23543 -13.11253 -12.94046 -12.74499 -12.64455 -12.39200 -12.27836 -12.13373 -11.96704 -11.90235 -11.78368 -11.36463 -11.04380 -10.79274 -10.73351 -10.33943 -10.08940 -9.73655 -8.11813 -6.16254 0.81976 1.32591 1.36718 1.42008 1.47546 2.23001 2.34042 2.41619 3.04436 3.24711 3.59334 3.74462 4.08575 4.12143 4.22270 4.25996 4.38025 4.41033 4.48924 4.52622 4.59101 4.65380 4.70798 4.76987 4.82144 4.94049 4.95726 5.06303 5.11058 5.18772 5.25253 5.32911 5.37998 5.45926 5.49596 5.60518 5.78509 5.90761 6.33161 6.52835 6.58246 6.77964 7.42862 7.46293 8.91849 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.008705 C = 0.006391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.183878 B = 3215.797659 C = 4380.110430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.182 3.818 4 H 0.143 0.857 5 C -0.168 4.168 6 N -0.620 5.620 7 C 0.076 3.924 8 C 0.505 3.495 9 O -0.517 6.517 10 N -0.568 5.568 11 C 0.152 3.848 12 C 0.016 3.984 13 C -0.495 4.495 14 H 0.041 0.959 15 C 0.053 3.947 16 N -0.899 5.899 17 Si 0.941 3.059 18 H -0.284 1.284 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.187 4.187 22 C -0.189 4.189 23 C 0.688 3.312 24 O -0.556 6.556 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 2.708 16.755 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 C 0.082 3.918 4 H 0.160 0.840 5 C -0.226 4.226 6 N -0.361 5.361 7 C -0.048 4.048 8 C 0.295 3.705 9 O -0.391 6.391 10 N -0.312 5.312 11 C 0.031 3.969 12 C 0.015 3.985 13 C -0.532 4.532 14 H 0.059 0.941 15 C -0.148 4.148 16 N -0.538 5.538 17 Si 0.768 3.232 18 H -0.210 1.210 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.224 4.224 22 C -0.227 4.227 23 C 0.391 3.609 24 O -0.429 6.429 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.173 2.363 16.317 17.605 hybrid contribution 0.959 -0.686 -0.778 1.413 sum -5.214 1.677 15.539 16.476 Atomic orbital electron populations 1.21678 0.94518 1.01774 1.01936 1.21980 0.97247 0.96250 1.02643 1.21217 0.94872 0.93208 0.82499 0.83987 1.22197 0.95499 1.02384 1.02503 1.47969 1.53475 1.30075 1.04584 1.22668 1.00163 0.90720 0.91293 1.21684 0.76707 0.79892 0.92217 1.90725 1.44007 1.33518 1.70881 1.46665 1.46946 1.27863 1.09682 1.21343 0.95129 1.05589 0.74817 1.19274 0.94261 0.86564 0.98434 1.20474 0.94261 0.95581 1.42866 0.94060 1.25257 0.97437 0.98589 0.93470 1.69738 1.29337 1.19076 1.35621 0.85883 0.80286 0.78866 0.78164 1.20977 1.20773 1.19709 1.22767 1.00361 1.00511 0.98779 1.22969 1.00545 1.07892 0.91297 1.16155 0.80208 0.82652 0.81918 1.90948 1.40095 1.28951 1.82921 0.89756 0.94819 0.92978 0.94562 0.88380 0.88594 0.95305 0.92144 0.83318 0.82856 0.92489 0.86946 0.92821 0.90638 0.90368 0.90530 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.80 71.98 0.71 -1.92 16 2 C -0.14 -3.14 5.38 30.59 0.16 -2.98 16 3 C 0.18 3.73 2.97 44.99 0.13 3.87 16 4 H 0.14 1.53 8.12 -2.39 -0.02 1.51 16 5 C -0.17 -3.97 9.23 71.98 0.66 -3.30 16 6 N -0.62 -17.04 2.34 -817.72 -1.91 -18.95 16 7 C 0.08 1.63 7.65 85.76 0.66 2.28 16 8 C 0.51 17.36 7.47 87.94 0.66 18.01 16 9 O -0.52 -20.03 16.93 -2.90 -0.05 -20.07 16 10 N -0.57 -23.85 2.42 -773.14 -1.87 -25.72 16 11 C 0.15 7.55 5.44 86.38 0.47 8.02 16 12 C 0.02 0.82 1.98 -52.93 -0.10 0.71 16 13 C -0.49 -28.29 9.01 25.60 0.23 -28.06 16 14 H 0.04 2.41 7.84 -2.91 -0.02 2.39 16 15 C 0.05 3.03 5.15 84.65 0.44 3.47 16 16 N -0.90 -52.13 10.90 21.45 0.23 -51.89 16 17 Si 0.94 47.02 29.56 68.60 2.03 49.05 16 18 H -0.28 -14.63 7.11 99.48 0.71 -13.92 16 19 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 21 C -0.19 -8.51 9.65 30.59 0.30 -8.22 16 22 C -0.19 -8.94 9.88 30.59 0.30 -8.64 16 23 C 0.69 28.05 7.77 179.44 1.39 29.45 16 24 O -0.56 -27.84 14.90 -3.84 -0.06 -27.90 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.03 0.75 7.75 -2.39 -0.02 0.73 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 1.16 6.80 -2.39 -0.02 1.15 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 0.97 6.97 -2.39 -0.02 0.95 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.15 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.76 7.63 -2.39 -0.02 2.75 16 36 H 0.11 6.35 5.12 -2.39 -0.01 6.34 16 37 H 0.26 14.67 8.32 -92.71 -0.77 13.89 16 38 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.08 3.41 6.55 -2.39 -0.02 3.39 16 40 H 0.08 3.43 8.03 -2.38 -0.02 3.41 16 41 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 Total: -1.00 -73.17 336.14 5.40 -67.78 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 1.02 Total: 15.03 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.00 Total: 12.68 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -3.54 Total: -96.56 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.11 Total: -47.97 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -73.17 5.40 -67.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348667630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.968 kcal (2) G-P(sol) polarization free energy of solvation -73.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds