Wall clock time and date at job start Tue Mar 31 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47552 * 2 1 4 4 H 1.08994 * 109.47299 * 185.18108 * 3 2 1 5 5 C 1.50706 * 109.46922 * 305.17933 * 3 2 1 6 6 H 1.08004 * 119.99983 * 119.99832 * 5 3 2 7 7 C 1.37879 * 119.99889 * 300.00358 * 5 3 2 8 8 N 1.31514 * 119.99697 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00022 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46783 * 90.00716 * 9 7 5 11 11 H 1.48499 * 109.47157 * 210.00434 * 9 7 5 12 12 H 1.48503 * 109.47286 * 330.00511 * 9 7 5 13 13 N 1.46902 * 109.47159 * 65.17724 * 3 2 1 14 14 C 1.46894 * 110.99637 * 85.90428 * 13 3 2 15 15 C 1.50705 * 109.46960 * 174.83466 * 14 13 3 16 16 C 1.35485 * 125.50590 * 95.02486 * 15 14 13 17 17 C 1.39794 * 107.84176 * 180.02562 * 16 15 14 18 18 C 1.37993 * 106.96850 * 0.02562 * 17 16 15 19 19 C 1.46500 * 126.26139 * 180.02562 * 18 17 16 20 20 O 1.21620 * 120.00099 * 359.96688 * 19 18 17 21 21 O 1.34891 * 119.99575 * 179.97438 * 19 18 17 22 22 C 1.45196 * 116.99603 * 179.97438 * 21 19 18 23 23 N 1.34957 * 125.50794 * 275.04918 * 15 14 13 24 24 C 1.46493 * 125.63484 * 359.97438 * 23 15 14 25 25 H 1.08996 * 109.47112 * 174.85720 * 1 2 3 26 26 H 1.09002 * 109.46774 * 294.85655 * 1 2 3 27 27 H 1.08995 * 109.47116 * 54.85180 * 1 2 3 28 28 H 1.08999 * 109.47026 * 239.99460 * 2 1 3 29 29 H 1.09001 * 109.46948 * 120.00446 * 2 1 3 30 30 H 0.97002 * 119.99438 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00029 * 321.95120 * 13 3 2 32 32 H 1.09004 * 109.47371 * 54.83569 * 14 13 3 33 33 H 1.09002 * 109.47223 * 294.83193 * 14 13 3 34 34 H 1.08004 * 126.08237 * 0.28649 * 16 15 14 35 35 H 1.08006 * 126.51859 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.47319 * 179.97438 * 22 21 19 37 37 H 1.08996 * 109.47560 * 299.99864 * 22 21 19 38 38 H 1.09001 * 109.47011 * 60.00009 * 22 21 19 39 39 H 1.09000 * 109.47192 * 269.97401 * 24 23 15 40 40 H 1.09000 * 109.47685 * 29.97028 * 24 23 15 41 41 H 1.09004 * 109.47558 * 149.97799 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1261 1.4438 -0.0928 5 6 1.4358 2.1889 -1.1614 6 1 0.8267 3.0629 -0.9834 7 6 1.6604 1.7561 -2.4510 8 7 1.1335 2.4078 -3.4645 9 14 2.7144 0.2448 -2.7588 10 1 1.8538 -0.9653 -2.7672 11 1 3.3967 0.3761 -4.0712 12 1 3.7304 0.1223 -1.6827 13 7 1.6552 2.0979 1.2570 14 6 2.6441 1.8364 2.3113 15 6 2.2842 2.6247 3.5443 16 6 1.5662 2.1587 4.5945 17 6 1.4515 3.1932 5.5277 18 6 2.1180 4.2827 5.0051 19 6 2.2615 5.5960 5.6382 20 8 1.7654 5.8027 6.7292 21 8 2.9438 6.5761 5.0109 22 6 3.0453 7.8517 5.6970 23 7 2.6247 3.9091 3.7806 24 6 3.4041 4.7645 2.8824 25 1 -0.3633 -1.0235 -0.0921 26 1 -0.3633 0.4320 0.9325 27 1 -0.3633 0.5916 -0.8402 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.2918 2.1035 -4.3718 31 1 0.7327 1.8103 1.5471 32 1 3.6331 2.1360 1.9643 33 1 2.6492 0.7726 2.5489 34 1 1.1588 1.1635 4.6949 35 1 0.9382 3.1486 6.4769 36 1 3.6178 8.5488 5.0851 37 1 2.0464 8.2532 5.8674 38 1 3.5483 7.7107 6.6536 39 1 4.4645 4.6637 3.1138 40 1 3.2274 4.4636 1.8497 41 1 3.1005 5.8030 3.0152 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590595573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:24 Heat of formation + Delta-G solvation = -50.681068 kcal Electronic energy + Delta-G solvation = -22129.657438 eV Core-core repulsion = 18817.104011 eV Total energy + Delta-G solvation = -3312.553427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56316 -40.96304 -38.50271 -37.54515 -34.66813 -33.84087 -33.27770 -30.86050 -29.11137 -28.22112 -27.40791 -25.98552 -24.95103 -23.41709 -21.48611 -21.16366 -20.52941 -18.89915 -18.49954 -17.92184 -17.55585 -17.06261 -16.85009 -16.18076 -15.62034 -15.29594 -15.03244 -14.89773 -14.48527 -14.40356 -14.30817 -14.07589 -14.04126 -13.72009 -13.26381 -13.15293 -12.94838 -12.79251 -12.70841 -12.47660 -12.30221 -12.11523 -11.86496 -11.84283 -11.63008 -11.22762 -11.08094 -10.64383 -9.72032 -9.27452 -8.98595 -8.19963 -6.19604 0.15152 1.34735 1.38471 1.47735 1.55174 1.64565 1.91960 2.11376 2.37389 3.15576 3.53586 3.71782 3.92789 4.01544 4.20738 4.27959 4.32217 4.35549 4.38043 4.42325 4.50868 4.55187 4.61713 4.67439 4.71664 4.83897 4.96237 5.04914 5.09773 5.15277 5.21497 5.28236 5.33278 5.63266 5.75939 5.79663 5.99800 6.04116 6.19997 6.64808 6.71653 6.73991 6.86681 7.43708 8.97317 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.004000 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.045725 B = 6998.668658 C = 7592.730411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C 0.193 3.807 4 H 0.033 0.967 5 C -0.483 4.483 6 H 0.034 0.966 7 C 0.014 3.986 8 N -0.953 5.953 9 Si 0.941 3.059 10 H -0.270 1.270 11 H -0.306 1.306 12 H -0.246 1.246 13 N -0.679 5.679 14 C 0.118 3.882 15 C 0.076 3.924 16 C -0.211 4.211 17 C -0.101 4.101 18 C -0.081 4.081 19 C 0.542 3.458 20 O -0.533 6.533 21 O -0.363 6.363 22 C 0.029 3.971 23 N -0.403 5.403 24 C 0.063 3.937 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.262 0.738 31 H 0.341 0.659 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 1.747 17.099 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.197 4.197 3 C 0.083 3.917 4 H 0.050 0.950 5 C -0.521 4.521 6 H 0.052 0.948 7 C -0.183 4.183 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.234 1.234 12 H -0.170 1.170 13 N -0.311 5.311 14 C -0.011 4.011 15 C -0.044 4.044 16 C -0.235 4.235 17 C -0.127 4.127 18 C -0.191 4.191 19 C 0.390 3.610 20 O -0.424 6.424 21 O -0.280 6.280 22 C -0.063 4.063 23 N -0.076 5.076 24 C -0.078 4.078 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.183 0.817 35 H 0.176 0.824 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.454 2.774 16.859 18.264 hybrid contribution -0.047 -1.042 -0.454 1.138 sum 6.407 1.732 16.404 17.696 Atomic orbital electron populations 1.21579 0.95292 1.00484 1.01834 1.22438 0.97772 0.99350 1.00102 1.19479 0.95305 0.89133 0.87756 0.94954 1.21079 1.29777 1.11347 0.89945 0.94754 1.25658 0.97018 0.99666 0.95921 1.70046 1.47439 1.42593 0.99337 0.85983 0.79934 0.80341 0.76839 1.19650 1.23405 1.16951 1.60469 1.05073 1.63132 1.02435 1.20547 0.96687 0.96964 0.86924 1.20680 1.01262 0.84553 0.97922 1.20953 1.06673 1.01362 0.94504 1.21495 0.99779 0.90839 1.00593 1.19487 1.14264 0.94146 0.91172 1.19875 0.74889 0.83593 0.82674 1.90850 1.47940 1.82185 1.21450 1.86622 1.68151 1.23502 1.49686 1.23584 1.03348 0.80555 0.98838 1.43937 1.39037 1.10434 1.14174 1.22398 0.96190 0.95331 0.93855 0.92824 0.92077 0.94052 0.94521 0.91105 0.92918 0.83954 0.90302 0.91153 0.81698 0.82397 0.84875 0.91947 0.91535 0.88875 0.89265 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 9.40 71.98 0.68 -4.15 16 2 C -0.16 -5.79 5.22 30.59 0.16 -5.63 16 3 C 0.19 7.98 1.93 44.17 0.09 8.06 16 4 H 0.03 1.37 6.76 -2.39 -0.02 1.35 16 5 C -0.48 -25.70 7.83 25.60 0.20 -25.50 16 6 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 7 C 0.01 0.77 5.42 84.66 0.46 1.22 16 8 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 9 Si 0.94 42.79 24.32 68.60 1.67 44.46 16 10 H -0.27 -11.82 6.92 99.48 0.69 -11.13 16 11 H -0.31 -14.23 7.11 99.48 0.71 -13.53 16 12 H -0.25 -10.09 6.53 99.48 0.65 -9.44 16 13 N -0.68 -24.01 6.19 -499.46 -3.09 -27.11 16 14 C 0.12 3.28 5.35 85.56 0.46 3.74 16 15 C 0.08 2.08 6.40 41.44 0.27 2.35 16 16 C -0.21 -5.26 10.71 22.01 0.24 -5.03 16 17 C -0.10 -2.66 10.66 22.59 0.24 -2.42 16 18 C -0.08 -2.31 6.89 40.32 0.28 -2.03 16 19 C 0.54 15.32 7.92 69.97 0.55 15.87 16 20 O -0.53 -17.00 16.68 19.44 0.32 -16.68 16 21 O -0.36 -8.43 8.00 -58.05 -0.46 -8.89 16 22 C 0.03 0.47 10.57 113.37 1.20 1.66 16 23 N -0.40 -11.07 3.15 -520.21 -1.64 -12.71 16 24 C 0.06 1.49 10.19 127.77 1.30 2.80 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.93 6.63 -2.39 -0.02 1.91 16 27 H 0.04 1.81 6.85 -2.39 -0.02 1.79 16 28 H 0.04 1.45 3.42 -2.39 -0.01 1.44 16 29 H 0.07 2.12 7.50 -2.39 -0.02 2.10 16 30 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.34 11.73 6.69 -89.70 -0.60 11.13 16 32 H 0.08 2.16 7.65 -2.38 -0.02 2.14 16 33 H 0.07 1.69 7.53 -2.39 -0.02 1.67 16 34 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 2.42 7.66 -2.39 -0.02 2.40 16 41 H 0.10 2.25 6.15 -2.38 -0.01 2.24 16 Total: -1.00 -67.26 331.38 3.57 -63.69 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.36 Total: 24.05 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 6.11 Total: -9.06 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -4.43 Total: -97.57 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.14 Total: -25.57 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.67 Total: 44.46 kcal Total: -67.26 3.57 -63.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590595573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.006 kcal (2) G-P(sol) polarization free energy of solvation -67.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds