Wall clock time and date at job start Tue Mar 31 2020 02:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09001 * 109.47502 * 305.00219 * 3 2 1 5 5 C 1.53006 * 109.47127 * 65.00062 * 3 2 1 6 6 N 1.46500 * 109.47007 * 184.99842 * 3 2 1 7 7 N 1.28468 * 124.87974 * 300.01895 * 6 3 2 8 8 C 1.31853 * 110.06392 * 179.97438 * 7 6 3 9 9 C 1.47588 * 126.52151 * 179.97438 * 8 7 6 10 10 O 1.21493 * 119.99652 * 180.02562 * 9 8 7 11 11 O 1.34721 * 120.00308 * 0.03336 * 9 8 7 12 12 C 1.45203 * 117.00256 * 179.97438 * 11 9 8 13 13 C 1.52990 * 109.47201 * 180.02562 * 12 11 9 14 14 C 1.50708 * 109.47232 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99996 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47018 * 60.00211 * 18 16 14 20 20 H 1.48499 * 109.47197 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47443 * 300.00378 * 18 16 14 22 22 C 1.41542 * 106.95475 * 0.02562 * 8 7 6 23 23 C 1.35048 * 124.88121 * 119.72313 * 6 3 2 24 24 C 1.50705 * 126.37818 * 0.02562 * 23 6 3 25 25 H 1.09000 * 109.47227 * 300.00275 * 1 2 3 26 26 H 1.09006 * 109.46717 * 59.99823 * 1 2 3 27 27 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47218 * 240.00282 * 2 1 3 29 29 H 1.08998 * 109.46849 * 119.99880 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 31 31 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 32 32 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.46941 * 300.00372 * 12 11 9 34 34 H 1.09007 * 109.46647 * 60.00148 * 12 11 9 35 35 H 1.09002 * 109.47407 * 300.00002 * 13 12 11 36 36 H 1.09003 * 109.47647 * 60.00121 * 13 12 11 37 37 H 0.97009 * 120.00134 * 180.02562 * 17 16 14 38 38 H 1.07999 * 127.25181 * 180.02562 * 22 8 7 39 39 H 1.09000 * 109.47234 * 89.99472 * 24 23 6 40 40 H 1.08995 * 109.47085 * 210.00169 * 24 23 6 41 41 H 1.09002 * 109.46915 * 329.99841 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 7 3.5000 1.4442 -0.1203 7 7 4.3065 0.8916 0.7130 8 6 5.5531 1.0697 0.3221 9 6 6.7667 0.5871 1.0096 10 8 7.8633 0.8205 0.5416 11 8 6.6585 -0.1124 2.1558 12 6 7.8939 -0.5559 2.7767 13 6 7.5724 -1.3283 4.0575 14 6 8.8547 -1.7880 4.7023 15 1 9.8039 -1.5531 4.2440 16 6 8.8159 -2.5094 5.8767 17 7 7.6599 -2.7958 6.4344 18 14 10.4052 -3.0797 6.6753 19 1 11.2439 -1.8998 7.0066 20 1 10.0931 -3.8293 7.9187 21 1 11.1421 -3.9628 5.7361 22 6 5.5060 1.8128 -0.8816 23 6 4.1914 2.0221 -1.1263 24 6 3.6079 2.7653 -2.3003 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 1.3969 31 1 2.0698 1.5875 2.1491 32 1 1.9989 3.1541 1.3076 33 1 8.4344 -1.2047 2.0875 34 1 8.5099 0.3102 3.0191 35 1 7.0317 -0.6798 4.7469 36 1 6.9565 -2.1943 3.8148 37 1 7.6325 -3.3030 7.2609 38 1 6.3426 2.1396 -1.4813 39 1 3.5104 3.8216 -2.0497 40 1 4.2652 2.6556 -3.1628 41 1 2.6258 2.3561 -2.5376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778162147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:18 Heat of formation + Delta-G solvation = -31.392517 kcal Electronic energy + Delta-G solvation = -21452.918389 eV Core-core repulsion = 18141.201376 eV Total energy + Delta-G solvation = -3311.717013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.81916 -39.51741 -36.80344 -35.88895 -33.29885 -32.94736 -31.91263 -30.22134 -29.32432 -27.24046 -25.95767 -24.84829 -23.64155 -21.27499 -21.11983 -20.64260 -19.32052 -17.26436 -16.90682 -16.31622 -16.04319 -15.69929 -15.53931 -15.37849 -14.46932 -14.29036 -14.03809 -13.44013 -13.37386 -13.17645 -13.00962 -12.77327 -12.58340 -12.45151 -12.29361 -12.16297 -11.93888 -11.36596 -11.18809 -11.13666 -10.98459 -10.71514 -10.66376 -10.65766 -10.30121 -9.56533 -9.54874 -9.24393 -9.15337 -8.98322 -8.37708 -6.03963 -4.08103 1.58253 1.99627 2.24643 3.27426 3.34523 3.38115 3.42941 3.49004 4.04713 4.36380 4.39585 4.44328 4.55542 4.65364 4.84514 4.92976 4.98337 5.13013 5.17156 5.27741 5.32271 5.43042 5.46634 5.51809 5.58668 5.62114 5.67954 5.81162 5.90036 5.91797 6.17751 6.19103 6.36428 6.70405 6.73717 7.03722 7.63611 7.71780 7.86239 7.96291 8.28748 8.39524 8.97337 9.55617 11.07564 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.003339 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.204851 B = 8384.280563 C = 9400.925653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.146 3.854 4 H 0.107 0.893 5 C -0.166 4.166 6 N -0.274 5.274 7 N -0.224 5.224 8 C 0.002 3.998 9 C 0.547 3.453 10 O -0.511 6.511 11 O -0.341 6.341 12 C 0.074 3.926 13 C 0.025 3.975 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.176 4.176 23 C 0.002 3.998 24 C -0.082 4.082 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.163 0.837 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.627 11.111 -17.358 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.046 3.954 4 H 0.125 0.875 5 C -0.224 4.224 6 N -0.065 5.065 7 N -0.060 5.060 8 C -0.156 4.156 9 C 0.389 3.611 10 O -0.399 6.399 11 O -0.256 6.256 12 C 0.002 3.998 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.204 4.204 23 C -0.121 4.121 24 C -0.140 4.140 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.180 0.820 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.107 10.572 -16.429 25.967 hybrid contribution 1.484 -0.011 -0.117 1.489 sum -15.622 10.561 -16.546 25.087 Atomic orbital electron populations 1.21791 0.94075 1.02764 1.02152 1.21907 0.96791 0.94311 1.04412 1.21716 0.73471 0.99134 1.01096 0.87482 1.22214 1.02559 1.01062 0.96528 1.45822 1.07323 1.37568 1.15761 1.73733 1.00294 1.15544 1.16458 1.20918 0.90146 1.06736 0.97828 1.19598 0.86444 0.75484 0.79540 1.90810 1.27296 1.55607 1.66170 1.86668 1.39890 1.63930 1.35132 1.23688 0.81840 0.98319 0.95959 1.19157 0.97993 0.95177 0.88856 1.20958 0.92180 1.35260 1.07989 0.92276 1.24981 0.96516 0.95790 0.96883 1.69973 1.24347 1.39171 1.19379 0.86531 0.83258 0.78882 0.78603 1.20082 1.21171 1.20075 1.21467 0.95913 1.04750 0.98242 1.21382 0.91842 1.03953 0.94951 1.20333 1.01000 0.99132 0.93538 0.91845 0.92539 0.91720 0.91204 0.89634 0.89998 0.90249 0.91867 0.92207 0.92200 0.95317 0.95314 0.92719 0.81981 0.90409 0.89546 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.14 -1.12 5.57 -26.73 -0.15 -1.27 16 3 C 0.15 1.21 3.02 -67.93 -0.21 1.00 16 4 H 0.11 0.57 6.55 -51.93 -0.34 0.23 16 5 C -0.17 -1.32 9.12 37.16 0.34 -0.99 16 6 N -0.27 -3.34 3.04 -50.66 -0.15 -3.49 16 7 N -0.22 -3.68 11.65 33.41 0.39 -3.29 16 8 C 0.00 0.03 7.17 -82.79 -0.59 -0.57 16 9 C 0.55 11.36 7.97 34.55 0.28 11.64 16 10 O -0.51 -11.24 16.72 -19.26 -0.32 -11.57 16 11 O -0.34 -7.80 10.23 -40.55 -0.41 -8.21 16 12 C 0.07 1.78 5.41 37.15 0.20 1.99 16 13 C 0.03 0.70 5.35 -27.88 -0.15 0.55 16 14 C -0.53 -15.28 9.11 -34.44 -0.31 -15.60 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.18 -2.45 10.73 -39.35 -0.42 -2.87 16 23 C 0.00 0.02 6.92 -82.20 -0.57 -0.55 16 24 C -0.08 -0.50 9.92 36.01 0.36 -0.14 16 25 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.44 6.57 -51.93 -0.34 0.10 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.31 7.03 -51.93 -0.37 -0.06 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -34.34 349.70 -6.91 -41.25 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -6.42 Total: -4.89 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.97 Total: -5.63 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.97 Total: -33.10 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.74 Total: -19.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.34 -6.91 -41.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778162147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.853 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds