Wall clock time and date at job start Tue Mar 31 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09001 * 109.47502 * 305.00219 * 3 2 1 5 5 C 1.53006 * 109.47127 * 65.00062 * 3 2 1 6 6 N 1.46500 * 109.47007 * 184.99842 * 3 2 1 7 7 N 1.28468 * 124.87974 * 300.01895 * 6 3 2 8 8 C 1.31853 * 110.06392 * 179.97438 * 7 6 3 9 9 C 1.47588 * 126.52151 * 179.97438 * 8 7 6 10 10 O 1.21493 * 119.99652 * 180.02562 * 9 8 7 11 11 O 1.34721 * 120.00308 * 0.03336 * 9 8 7 12 12 C 1.45203 * 117.00256 * 179.97438 * 11 9 8 13 13 C 1.52990 * 109.47201 * 180.02562 * 12 11 9 14 14 C 1.50708 * 109.47232 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99715 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99996 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47018 * 60.00211 * 18 16 14 20 20 H 1.48499 * 109.47197 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47443 * 300.00378 * 18 16 14 22 22 C 1.41542 * 106.95475 * 0.02562 * 8 7 6 23 23 C 1.35048 * 124.88121 * 119.72313 * 6 3 2 24 24 C 1.50705 * 126.37818 * 0.02562 * 23 6 3 25 25 H 1.09000 * 109.47227 * 300.00275 * 1 2 3 26 26 H 1.09006 * 109.46717 * 59.99823 * 1 2 3 27 27 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47218 * 240.00282 * 2 1 3 29 29 H 1.08998 * 109.46849 * 119.99880 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 31 31 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 32 32 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.46941 * 300.00372 * 12 11 9 34 34 H 1.09007 * 109.46647 * 60.00148 * 12 11 9 35 35 H 1.09002 * 109.47407 * 300.00002 * 13 12 11 36 36 H 1.09003 * 109.47647 * 60.00121 * 13 12 11 37 37 H 0.97009 * 120.00134 * 180.02562 * 17 16 14 38 38 H 1.07999 * 127.25181 * 180.02562 * 22 8 7 39 39 H 1.09000 * 109.47234 * 89.99472 * 24 23 6 40 40 H 1.08995 * 109.47085 * 210.00169 * 24 23 6 41 41 H 1.09002 * 109.46915 * 329.99841 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 7 3.5000 1.4442 -0.1203 7 7 4.3065 0.8916 0.7130 8 6 5.5531 1.0697 0.3221 9 6 6.7667 0.5871 1.0096 10 8 7.8633 0.8205 0.5416 11 8 6.6585 -0.1124 2.1558 12 6 7.8939 -0.5559 2.7767 13 6 7.5724 -1.3283 4.0575 14 6 8.8547 -1.7880 4.7023 15 1 9.8039 -1.5531 4.2440 16 6 8.8159 -2.5094 5.8767 17 7 7.6599 -2.7958 6.4344 18 14 10.4052 -3.0797 6.6753 19 1 11.2439 -1.8998 7.0066 20 1 10.0931 -3.8293 7.9187 21 1 11.1421 -3.9628 5.7361 22 6 5.5060 1.8128 -0.8816 23 6 4.1914 2.0221 -1.1263 24 6 3.6079 2.7653 -2.3003 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5489 2.1253 1.3969 31 1 2.0698 1.5875 2.1491 32 1 1.9989 3.1541 1.3076 33 1 8.4344 -1.2047 2.0875 34 1 8.5099 0.3102 3.0191 35 1 7.0317 -0.6798 4.7469 36 1 6.9565 -2.1943 3.8148 37 1 7.6325 -3.3030 7.2609 38 1 6.3426 2.1396 -1.4813 39 1 3.5104 3.8216 -2.0497 40 1 4.2652 2.6556 -3.1628 41 1 2.6258 2.3561 -2.5376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778162147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:17 Heat of formation + Delta-G solvation = -52.124551 kcal Electronic energy + Delta-G solvation = -21453.817397 eV Core-core repulsion = 18141.201376 eV Total energy + Delta-G solvation = -3312.616021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.86884 -41.23370 -37.81757 -37.41209 -35.47566 -33.83667 -32.87032 -32.26768 -30.10656 -28.05695 -27.48246 -26.26257 -24.80655 -22.99497 -22.19915 -22.01981 -20.54895 -18.74217 -18.25892 -17.89927 -17.73210 -17.19300 -16.87462 -16.49984 -16.09351 -15.14485 -15.08490 -14.69887 -14.52275 -14.40863 -14.10991 -13.84198 -13.60666 -13.38757 -13.17167 -13.10649 -13.05385 -12.74977 -12.64039 -12.60588 -12.55855 -12.06977 -12.04334 -11.85896 -11.68259 -11.58578 -11.53011 -11.44669 -10.62849 -10.24495 -9.96872 -8.28001 -6.42369 0.20671 1.01524 1.26173 1.40390 1.44731 1.52722 1.81454 2.02899 2.39598 3.05817 3.18520 3.63203 3.64973 3.73159 3.96981 3.98545 4.17621 4.18864 4.33153 4.38420 4.40917 4.50721 4.58018 4.63982 4.71645 4.80111 4.85945 4.98767 5.04246 5.08284 5.10034 5.15748 5.24179 5.30316 5.40551 5.41563 5.43828 5.69964 5.86824 6.03432 6.53767 6.70649 6.91194 7.27321 8.84840 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.003339 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.204851 B = 8384.280563 C = 9400.925653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.137 3.863 4 H 0.153 0.847 5 C -0.163 4.163 6 N -0.264 5.264 7 N -0.257 5.257 8 C -0.036 4.036 9 C 0.545 3.455 10 O -0.530 6.530 11 O -0.357 6.357 12 C 0.089 3.911 13 C 0.033 3.967 14 C -0.552 4.552 15 H 0.068 0.932 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.978 3.022 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.192 4.192 23 C 0.025 3.975 24 C -0.081 4.081 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.004 0.996 36 H 0.003 0.997 37 H 0.268 0.732 38 H 0.174 0.826 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.738 12.405 -19.245 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.038 3.962 4 H 0.170 0.830 5 C -0.221 4.221 6 N -0.056 5.056 7 N -0.095 5.095 8 C -0.192 4.192 9 C 0.389 3.611 10 O -0.419 6.419 11 O -0.272 6.272 12 C 0.016 3.984 13 C -0.004 4.004 14 C -0.590 4.590 15 H 0.086 0.914 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.220 4.220 23 C -0.099 4.099 24 C -0.139 4.139 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.077 0.923 38 H 0.191 0.809 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.229 11.875 -18.330 28.448 hybrid contribution 1.648 -0.366 0.400 1.735 sum -16.581 11.509 -17.931 26.998 Atomic orbital electron populations 1.21774 0.91586 1.03162 1.03673 1.21871 0.98855 0.93994 1.02494 1.22238 0.71301 0.99656 1.02972 0.82979 1.22216 1.04363 1.00414 0.95104 1.46315 1.08444 1.35829 1.14982 1.73656 1.00471 1.17060 1.18336 1.20747 0.89490 1.09365 0.99583 1.20157 0.87740 0.74595 0.78580 1.90769 1.28315 1.56398 1.66395 1.86657 1.39135 1.64850 1.36580 1.23280 0.82363 0.98105 0.94665 1.18966 0.97274 0.94100 0.90084 1.21341 0.92752 1.36023 1.08849 0.91410 1.26032 1.00631 0.95464 0.97303 1.70110 1.27012 1.39641 1.19925 0.85307 0.78224 0.78720 0.77624 1.18918 1.20343 1.18907 1.21730 0.97913 1.05034 0.97283 1.22143 0.90772 1.01848 0.95140 1.20603 1.02320 0.99546 0.91449 0.91212 0.90024 0.92013 0.91679 0.93109 0.86890 0.93660 0.91693 0.91803 0.91783 0.97807 0.97817 0.92281 0.80903 0.88354 0.88101 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.67 71.98 0.70 -0.56 16 2 C -0.13 -2.06 5.57 30.59 0.17 -1.89 16 3 C 0.14 1.94 3.02 44.99 0.14 2.08 16 4 H 0.15 0.84 6.55 -2.39 -0.02 0.82 16 5 C -0.16 -2.36 9.12 71.98 0.66 -1.71 16 6 N -0.26 -6.14 3.04 -314.18 -0.96 -7.10 16 7 N -0.26 -8.72 11.65 -48.22 -0.56 -9.28 16 8 C -0.04 -1.33 7.17 42.42 0.30 -1.02 16 9 C 0.55 23.81 7.97 70.29 0.56 24.37 16 10 O -0.53 -24.19 16.72 19.86 0.33 -23.86 16 11 O -0.36 -17.31 10.23 -56.31 -0.58 -17.89 16 12 C 0.09 4.46 5.41 71.98 0.39 4.85 16 13 C 0.03 1.92 5.35 29.85 0.16 2.08 16 14 C -0.55 -32.88 9.11 25.60 0.23 -32.65 16 15 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 16 C 0.00 0.27 5.46 84.66 0.46 0.73 16 17 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 18 Si 0.98 45.02 29.54 68.60 2.03 47.05 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 22 C -0.19 -5.24 10.73 22.42 0.24 -5.00 16 23 C 0.02 0.50 6.92 41.40 0.29 0.78 16 24 C -0.08 -0.62 9.92 71.24 0.71 0.09 16 25 H 0.07 0.53 6.56 -2.39 -0.02 0.51 16 26 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 0.90 6.57 -2.39 -0.02 0.89 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.06 3.12 8.14 -2.38 -0.02 3.10 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 38 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.10 0.28 7.03 -2.39 -0.02 0.26 16 Total: -1.00 -78.85 349.70 6.56 -72.29 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.01 Total: 4.09 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.00 Total: -7.86 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -1.23 Total: -73.82 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.24 Total: -41.75 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.85 6.56 -72.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778162147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.165 kcal (2) G-P(sol) polarization free energy of solvation -78.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds