Wall clock time and date at job start Tue Mar 31 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47010 * 2 1 4 4 H 1.08998 * 109.47324 * 55.00171 * 3 2 1 5 5 C 1.50697 * 109.46821 * 175.00036 * 3 2 1 6 6 H 1.08004 * 120.00210 * 119.99894 * 5 3 2 7 7 C 1.37879 * 120.00251 * 300.00169 * 5 3 2 8 8 N 1.31509 * 119.99870 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99834 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47432 * 90.00252 * 9 7 5 11 11 H 1.48505 * 109.47097 * 210.00315 * 9 7 5 12 12 H 1.48503 * 109.47309 * 330.00172 * 9 7 5 13 13 O 1.45196 * 109.47064 * 294.99892 * 3 2 1 14 14 C 1.34816 * 117.00094 * 90.00726 * 13 3 2 15 15 O 1.21557 * 119.99918 * 359.97438 * 14 13 3 16 16 C 1.47001 * 120.00407 * 180.02562 * 14 13 3 17 17 C 1.38484 * 126.89734 * 180.02562 * 16 14 13 18 18 C 1.39639 * 105.35785 * 179.97438 * 17 16 14 19 19 N 1.30876 * 107.88230 * 359.74709 * 18 17 16 20 20 N 1.28451 * 110.93892 * 0.43713 * 19 18 17 21 21 C 1.46494 * 125.19264 * 179.82273 * 20 19 18 22 22 C 1.52997 * 109.47140 * 269.69374 * 21 20 19 23 23 C 1.53006 * 109.47164 * 295.00115 * 22 21 20 24 24 C 1.52999 * 109.47269 * 175.00611 * 22 21 20 25 25 H 1.08997 * 109.47058 * 59.99628 * 1 2 3 26 26 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46985 * 299.99962 * 1 2 3 28 28 H 1.08999 * 109.46985 * 240.00038 * 2 1 3 29 29 H 1.08997 * 109.47058 * 120.00372 * 2 1 3 30 30 H 0.97003 * 119.99922 * 179.97438 * 8 7 5 31 31 H 1.08006 * 127.32312 * 359.97438 * 17 16 14 32 32 H 1.08005 * 126.05870 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.47118 * 149.69029 * 21 20 19 34 34 H 1.09001 * 109.47722 * 29.69593 * 21 20 19 35 35 H 1.09000 * 109.47140 * 55.00064 * 22 21 20 36 36 H 1.09001 * 109.47002 * 59.99738 * 23 22 21 37 37 H 1.08993 * 109.46955 * 180.02562 * 23 22 21 38 38 H 1.09000 * 109.47050 * 300.00004 * 23 22 21 39 39 H 1.09001 * 109.47362 * 180.02562 * 24 22 21 40 40 H 1.09002 * 109.46716 * 299.99747 * 24 22 21 41 41 H 1.09000 * 109.47486 * 59.99665 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8803 1.3361 9 14 3.0964 0.1100 2.5706 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2359 3.8754 12 1 1.7882 0.8093 2.6395 13 8 1.6559 2.0916 -1.2407 14 6 0.4676 2.7282 -1.2560 15 8 -0.2285 2.7400 -0.2596 16 6 0.0132 3.4073 -2.4780 17 6 -1.1731 4.1003 -2.6519 18 6 -1.1441 4.5579 -3.9709 19 7 -0.0198 4.1599 -4.5098 20 7 0.6769 3.4819 -3.6702 21 6 1.9859 2.8851 -3.9467 22 6 1.7961 1.4631 -4.4783 23 6 1.1753 0.5891 -3.3866 24 6 3.1533 0.8849 -4.8840 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.8770 0.4825 2.1131 31 1 -1.9546 4.2542 -1.9225 32 1 -1.9114 5.1410 -4.4585 33 1 2.5725 2.8546 -3.0284 34 1 2.5087 3.4848 -4.6918 35 1 1.1363 1.4845 -5.3456 36 1 0.2084 1.0010 -3.0975 37 1 1.0405 -0.4240 -3.7652 38 1 1.8351 0.5677 -2.5193 39 1 3.0181 -0.1281 -5.2631 40 1 3.5956 1.5075 -5.6617 41 1 3.8131 0.8635 -4.0166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842771721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:47 Heat of formation + Delta-G solvation = -32.183749 kcal Electronic energy + Delta-G solvation = -23747.047839 eV Core-core repulsion = 20435.296516 eV Total energy + Delta-G solvation = -3311.751323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.63762 -41.31893 -38.04826 -37.27099 -35.53688 -33.97358 -33.01477 -32.05424 -29.80424 -28.10892 -27.55838 -25.64919 -24.39964 -22.72885 -22.41654 -21.48569 -21.13464 -19.31709 -18.67536 -18.14668 -17.68981 -16.88819 -16.63025 -16.18256 -16.03711 -15.35318 -15.04805 -14.65895 -14.61387 -14.51165 -14.15906 -13.90918 -13.81530 -13.69934 -13.26018 -13.16749 -13.00074 -12.79345 -12.59254 -12.28933 -12.12767 -12.02114 -11.94454 -11.77492 -11.55660 -11.44558 -11.18698 -11.13817 -10.73663 -10.28283 -10.04579 -8.43321 -6.50798 0.00345 1.22811 1.31587 1.39245 1.40083 1.57222 1.75324 1.93896 2.19516 2.89563 3.42458 3.61967 3.73634 3.95811 4.01051 4.08879 4.15129 4.18164 4.31179 4.42993 4.47781 4.56274 4.59657 4.70853 4.79848 4.86771 4.88457 4.93391 4.96085 5.00711 5.06060 5.12870 5.23875 5.34246 5.36308 5.47049 5.53736 5.60448 5.72209 6.11014 6.52964 6.72294 7.02501 7.13305 8.71710 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.006696 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.899717 B = 4180.511532 C = 4793.741041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.203 3.797 4 H 0.027 0.973 5 C -0.530 4.530 6 H 0.054 0.946 7 C 0.037 3.963 8 N -0.926 5.926 9 Si 0.928 3.072 10 H -0.252 1.252 11 H -0.288 1.288 12 H -0.257 1.257 13 O -0.331 6.331 14 C 0.528 3.472 15 O -0.523 6.523 16 C -0.047 4.047 17 C -0.157 4.157 18 C 0.000 4.000 19 N -0.281 5.281 20 N -0.257 5.257 21 C 0.110 3.890 22 C -0.093 4.093 23 C -0.160 4.160 24 C -0.140 4.140 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.274 0.726 31 H 0.178 0.822 32 H 0.229 0.771 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 1.403 -11.619 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.149 3.851 4 H 0.045 0.955 5 C -0.568 4.568 6 H 0.072 0.928 7 C -0.164 4.164 8 N -0.564 5.564 9 Si 0.754 3.246 10 H -0.177 1.177 11 H -0.215 1.215 12 H -0.181 1.181 13 O -0.246 6.246 14 C 0.373 3.627 15 O -0.412 6.412 16 C -0.172 4.172 17 C -0.186 4.186 18 C -0.174 4.174 19 N -0.115 5.115 20 N -0.047 5.047 21 C -0.009 4.009 22 C -0.112 4.112 23 C -0.217 4.217 24 C -0.198 4.198 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.195 0.805 32 H 0.245 0.755 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.448 1.285 -12.173 16.093 hybrid contribution -0.372 -0.334 1.890 1.955 sum -10.820 0.951 -10.283 14.957 Atomic orbital electron populations 1.21841 0.94917 1.01920 1.01376 1.22303 0.96144 0.97433 1.02319 1.20694 0.94181 0.89645 0.80617 0.95478 1.20881 0.89213 1.39530 1.07172 0.92751 1.25418 0.95846 0.95687 0.99414 1.69936 1.10162 1.45482 1.30866 0.86163 0.79498 0.80397 0.78579 1.17740 1.21487 1.18123 1.86675 1.34668 1.62598 1.40681 1.20038 0.80345 0.75887 0.86466 1.90817 1.56027 1.59517 1.34809 1.20894 0.98245 1.10377 0.87716 1.22510 0.96567 1.00231 0.99266 1.24213 0.96493 1.04066 0.92655 1.73158 1.06770 1.10607 1.20999 1.46109 1.16558 1.35953 1.06119 1.22563 0.78583 0.95248 1.04501 1.21333 0.99399 0.92097 0.98363 1.22242 1.00112 0.99598 0.99789 1.21731 0.94554 1.01785 1.01690 0.93484 0.90892 0.93552 0.90189 0.92463 0.91688 0.80450 0.75462 0.88273 0.86277 0.90073 0.94989 0.91638 0.90939 0.90894 0.90657 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.56 71.98 0.62 -4.57 16 2 C -0.14 -6.01 4.81 30.60 0.15 -5.86 16 3 C 0.20 9.57 1.79 29.85 0.05 9.62 16 4 H 0.03 1.40 6.22 -2.39 -0.01 1.39 16 5 C -0.53 -29.10 9.48 25.60 0.24 -28.86 16 6 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 7 C 0.04 2.03 5.45 84.66 0.46 2.49 16 8 N -0.93 -54.60 13.96 21.45 0.30 -54.30 16 9 Si 0.93 42.84 24.41 68.60 1.67 44.52 16 10 H -0.25 -10.78 6.83 99.48 0.68 -10.10 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.26 -11.66 6.53 99.48 0.65 -11.01 16 13 O -0.33 -13.88 4.17 -57.28 -0.24 -14.12 16 14 C 0.53 20.83 5.32 70.12 0.37 21.20 16 15 O -0.52 -22.46 14.11 19.65 0.28 -22.18 16 16 C -0.05 -1.56 5.71 40.75 0.23 -1.33 16 17 C -0.16 -4.20 10.85 22.67 0.25 -3.96 16 18 C 0.00 0.00 12.03 85.17 1.02 1.03 16 19 N -0.28 -7.62 11.90 -57.15 -0.68 -8.30 16 20 N -0.26 -7.69 3.18 -334.75 -1.06 -8.76 16 21 C 0.11 3.06 5.42 86.38 0.47 3.53 16 22 C -0.09 -2.33 3.13 -10.79 -0.03 -2.36 16 23 C -0.16 -4.72 7.66 71.98 0.55 -4.17 16 24 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 25 H 0.05 1.69 5.80 -2.39 -0.01 1.67 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 1.76 7.79 -2.39 -0.02 1.75 16 28 H 0.08 3.16 6.80 -2.39 -0.02 3.14 16 29 H 0.06 2.46 3.22 -2.39 -0.01 2.45 16 30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 32 H 0.23 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.10 3.28 6.15 -2.38 -0.01 3.26 16 34 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.00 5.66 -2.39 -0.01 0.98 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 2.53 3.95 -2.39 -0.01 2.52 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.48 316.63 6.26 -58.21 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.95 Total: 20.61 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 5.04 Total: -15.68 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -1.44 Total: -71.36 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: 0.04 Total: -36.30 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.67 Total: 44.52 kcal Total: -64.48 6.26 -58.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.029 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds