Wall clock time and date at job start Tue Mar 31 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21697 * 119.99433 * 0.02562 * 14 13 3 16 16 C 1.46659 * 120.00539 * 180.02562 * 14 13 3 17 17 C 1.36541 * 125.98553 * 179.97438 * 16 14 13 18 18 C 1.40367 * 106.70340 * 179.97438 * 17 16 14 19 19 C 1.35125 * 107.11686 * 359.97438 * 18 17 16 20 20 C 1.50705 * 125.61949 * 180.02562 * 19 18 17 21 21 N 1.46890 * 109.46926 * 90.00093 * 20 19 18 22 22 C 1.46899 * 111.00284 * 170.00584 * 21 20 19 23 23 C 1.46901 * 111.00279 * 293.95650 * 21 20 19 24 24 O 1.33935 * 108.77040 * 359.77143 * 19 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.07990 * 126.65000 * 359.97438 * 17 16 14 33 33 H 1.07997 * 126.43967 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.47371 * 210.00606 * 20 19 18 35 35 H 1.09008 * 109.46656 * 330.00226 * 20 19 18 36 36 H 1.08999 * 109.47469 * 59.99577 * 22 21 20 37 37 H 1.08997 * 109.47762 * 180.02562 * 22 21 20 38 38 H 1.09008 * 109.46626 * 300.00089 * 22 21 20 39 39 H 1.08993 * 109.47364 * 59.99923 * 23 21 20 40 40 H 1.09003 * 109.47521 * 180.02562 * 23 21 20 41 41 H 1.09000 * 109.47418 * 300.00000 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4311 16 6 0.0473 3.3206 2.6198 17 6 -1.1483 3.9312 2.8690 18 6 -1.0864 4.4180 4.1842 19 6 0.1287 4.0868 4.6740 20 6 0.6351 4.4082 6.0565 21 7 0.2848 3.3147 6.9726 22 6 0.9604 3.4756 8.2671 23 6 -1.1707 3.2195 7.1469 24 8 0.8069 3.4210 3.7303 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 -1.9803 4.0221 2.1866 33 1 -1.8640 4.9553 4.7066 34 1 1.7183 4.5260 6.0285 35 1 0.1778 5.3345 6.4047 36 1 0.6591 4.4204 8.7194 37 1 0.6841 2.6525 8.9261 38 1 2.0400 3.4730 8.1162 39 1 -1.6406 3.0308 6.1817 40 1 -1.4023 2.4024 7.8301 41 1 -1.5493 4.1551 7.5585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952881654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:41 Heat of formation + Delta-G solvation = -40.606419 kcal Electronic energy + Delta-G solvation = -22043.317352 eV Core-core repulsion = 18731.200794 eV Total energy + Delta-G solvation = -3312.116558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.71090 -40.56782 -38.35606 -37.04410 -34.48078 -33.99242 -33.00065 -31.77042 -29.22892 -28.48461 -27.76862 -25.20595 -23.97401 -22.87093 -22.35072 -21.59528 -21.07178 -19.71121 -18.04665 -17.59328 -17.28031 -16.91253 -16.34800 -16.28001 -16.06610 -15.74569 -15.22061 -14.76631 -14.64468 -14.25122 -13.94727 -13.83917 -13.74925 -13.51199 -13.20895 -13.17530 -12.94753 -12.69622 -12.66552 -12.57575 -12.42557 -12.21344 -12.09663 -11.63022 -11.14735 -11.09287 -10.99736 -10.55115 -9.87802 -9.56095 -9.27792 -8.17456 -6.35177 0.05465 1.32351 1.44836 1.46974 1.54726 1.64530 2.24816 2.34570 2.57536 3.08384 3.11831 3.57873 3.93720 3.96432 4.18890 4.26408 4.44316 4.46983 4.53159 4.54389 4.61077 4.71513 4.72213 4.75208 4.86740 4.90456 5.04179 5.06633 5.07376 5.22210 5.39402 5.41856 5.45994 5.56255 5.71643 5.80217 5.92754 5.98996 6.07712 6.12272 6.69165 6.83205 7.23241 7.39991 8.87990 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.004065 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.092469 B = 6885.987412 C = 7638.590309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.006 0.994 5 C -0.554 4.554 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.693 5.693 14 C 0.584 3.416 15 O -0.564 6.564 16 C -0.094 4.094 17 C -0.125 4.125 18 C -0.207 4.207 19 C 0.024 3.976 20 C 0.131 3.869 21 N -0.570 5.570 22 C 0.026 3.974 23 C 0.018 3.982 24 O -0.166 6.166 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.267 0.733 31 H 0.403 0.597 32 H 0.162 0.838 33 H 0.186 0.814 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 8.139 20.966 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.024 0.976 5 C -0.592 4.592 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.340 5.340 14 C 0.371 3.629 15 O -0.446 6.446 16 C -0.146 4.146 17 C -0.146 4.146 18 C -0.226 4.226 19 C -0.029 4.029 20 C 0.003 3.997 21 N -0.295 5.295 22 C -0.121 4.121 23 C -0.130 4.130 24 O -0.062 6.062 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.237 0.763 32 H 0.180 0.820 33 H 0.204 0.796 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.380 7.428 19.931 22.207 hybrid contribution 0.621 0.542 -0.087 0.828 sum -5.759 7.969 19.845 22.147 Atomic orbital electron populations 1.21695 0.96883 0.99456 1.00232 1.21800 0.93870 0.98854 1.01495 1.18519 0.94025 0.89384 0.80661 0.97570 1.21505 0.91194 1.39524 1.06956 0.91358 1.25749 1.03458 0.94133 0.94818 1.70028 1.37198 1.38026 1.09768 0.85406 0.78868 0.78476 0.77643 1.19030 1.20838 1.19674 1.46276 1.14773 1.54888 1.18066 1.16957 0.82601 0.78450 0.84880 1.90813 1.52659 1.62002 1.39122 1.22051 0.94042 1.10600 0.87893 1.22136 0.96720 0.97868 0.97893 1.21831 0.98580 1.07525 0.94704 1.23220 0.92213 0.95726 0.91732 1.20719 1.02691 0.93504 0.82737 1.61837 1.10050 1.44468 1.13120 1.22430 0.99619 1.01463 0.88553 1.22518 0.86506 1.01698 1.02298 1.84022 1.42518 1.59348 1.20322 0.93193 0.94991 0.94310 0.94251 0.90386 0.92400 0.76285 0.82031 0.79643 0.88079 0.88310 0.93790 0.90469 0.90872 0.92102 0.90658 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.51 71.98 0.61 -5.24 16 2 C -0.12 -6.19 5.45 30.60 0.17 -6.02 16 3 C 0.28 14.77 2.24 44.25 0.10 14.87 16 4 H 0.01 0.40 7.58 -2.39 -0.02 0.38 16 5 C -0.55 -30.23 8.73 25.60 0.22 -30.01 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -52.48 11.29 21.45 0.24 -52.24 16 9 Si 0.97 42.62 29.54 68.60 2.03 44.64 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.69 -31.63 5.02 -450.10 -2.26 -33.89 16 14 C 0.58 25.84 6.35 86.44 0.55 26.39 16 15 O -0.56 -28.16 13.99 -4.34 -0.06 -28.22 16 16 C -0.09 -3.37 7.13 24.07 0.17 -3.19 16 17 C -0.13 -3.73 10.62 22.39 0.24 -3.49 16 18 C -0.21 -4.58 9.36 22.07 0.21 -4.38 16 19 C 0.02 0.57 6.21 24.97 0.16 0.73 16 20 C 0.13 2.10 5.49 85.56 0.47 2.57 16 21 N -0.57 -9.53 5.01 -953.48 -4.78 -14.31 16 22 C 0.03 0.30 9.57 127.69 1.22 1.52 16 23 C 0.02 0.25 9.27 127.69 1.18 1.43 16 24 O -0.17 -5.32 10.40 -5.09 -0.05 -5.38 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.03 1.57 7.84 -2.39 -0.02 1.56 16 27 H 0.04 1.78 5.64 -2.38 -0.01 1.76 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 4.37 5.95 -2.39 -0.01 4.35 16 30 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.40 16.67 8.30 -92.71 -0.77 15.90 16 32 H 0.16 4.56 8.06 -2.92 -0.02 4.54 16 33 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.10 1.54 8.06 -2.39 -0.02 1.52 16 35 H 0.10 1.03 8.12 -2.38 -0.02 1.01 16 36 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 38 H 0.07 0.81 8.12 -2.38 -0.02 0.79 16 39 H 0.06 1.04 6.31 -2.39 -0.02 1.02 16 40 H 0.07 0.97 8.12 -2.39 -0.02 0.95 16 41 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -67.55 337.70 1.12 -66.42 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.26 Total: 26.29 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.75 Total: -3.33 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -6.79 Total: -100.43 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.11 Total: -33.59 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -67.55 1.12 -66.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952881654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.815 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds