Wall clock time and date at job start Tue Mar 31 2020 02:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50701 * 120.00055 * 2 1 4 4 H 1.08998 * 109.86953 * 358.99061 * 3 2 1 5 5 O 1.43740 * 109.87731 * 237.82731 * 3 2 1 6 6 C 1.44384 * 106.97652 * 267.09296 * 5 3 2 7 7 C 1.54992 * 103.48773 * 319.93641 * 6 5 3 8 8 C 1.54101 * 109.87600 * 119.99986 * 3 2 1 9 9 H 1.08999 * 110.49080 * 358.58073 * 8 3 2 10 10 C 1.50710 * 110.48450 * 236.06703 * 8 3 2 11 11 O 1.21275 * 119.99776 * 0.02562 * 10 8 3 12 12 N 1.34773 * 119.99941 * 179.97438 * 10 8 3 13 13 C 1.46498 * 120.00032 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47317 * 180.02562 * 13 12 10 15 15 C 1.53492 * 114.20686 * 174.99874 * 14 13 12 16 16 N 1.47064 * 87.98473 * 87.71658 * 15 14 13 17 17 C 1.36932 * 136.05908 * 207.07584 * 16 15 14 18 18 H 1.08001 * 119.99827 * 7.83717 * 17 16 15 19 19 C 1.38814 * 120.00431 * 187.82899 * 17 16 15 20 20 N 1.31616 * 120.00175 * 195.17932 * 19 17 16 21 21 Si 1.86806 * 119.99385 * 15.17320 * 19 17 16 22 22 H 1.48498 * 109.47209 * 269.99718 * 21 19 17 23 23 H 1.48504 * 109.46570 * 150.00045 * 21 19 17 24 24 H 1.48495 * 109.47319 * 30.00294 * 21 19 17 25 25 C 1.47071 * 87.88256 * 27.34384 * 16 15 14 26 26 H 1.07997 * 120.00039 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99554 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99720 * 179.97438 * 2 1 3 29 29 H 1.08994 * 110.61816 * 78.44237 * 6 5 3 30 30 H 1.09001 * 110.61431 * 201.28255 * 6 5 3 31 31 H 1.09000 * 110.91246 * 278.82820 * 7 6 5 32 32 H 1.09003 * 110.90715 * 155.22119 * 7 6 5 33 33 H 0.97006 * 120.00014 * 0.02562 * 12 10 8 34 34 H 1.08996 * 109.47137 * 60.00015 * 13 12 10 35 35 H 1.09003 * 109.46989 * 300.00051 * 13 12 10 36 36 H 1.09000 * 113.27906 * 41.93201 * 14 13 12 37 37 H 1.08994 * 113.46766 * 332.93768 * 15 14 13 38 38 H 1.09003 * 113.52103 * 202.50483 * 15 14 13 39 39 H 0.96991 * 120.00289 * 354.90059 * 20 19 17 40 40 H 1.09000 * 113.46667 * 87.43925 * 25 16 15 41 41 H 1.09001 * 113.46589 * 217.87539 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3612 2.1384 -0.0181 5 8 2.9313 1.3685 -1.1442 6 6 4.2187 0.8667 -0.7253 7 6 4.3946 1.4631 0.6945 8 6 2.9531 1.3965 1.2551 9 1 2.8246 0.5120 1.8790 10 6 2.6335 2.6439 2.0382 11 8 1.7743 3.4037 1.6443 12 7 3.3019 2.9144 3.1769 13 6 2.9910 4.1266 3.9385 14 6 3.8860 4.1941 5.1775 15 6 3.7355 5.4857 5.9930 16 7 2.6409 4.8332 6.7271 17 6 1.5180 5.2449 7.3940 18 1 1.2134 6.2802 7.3508 19 6 0.7712 4.3317 8.1256 20 7 -0.4478 4.6399 8.5147 21 14 1.4964 2.6652 8.5576 22 1 1.1744 1.6917 7.4834 23 1 0.9205 2.1929 9.8424 24 1 2.9704 2.7862 8.6906 25 6 3.2866 3.5444 6.4355 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 4.2119 -0.2225 -0.6860 30 1 5.0043 1.2206 -1.3929 31 1 4.7446 2.4941 0.6427 32 1 5.0726 0.8531 1.2914 33 1 3.9890 2.3064 3.4921 34 1 1.9455 4.1043 4.2458 35 1 3.1678 5.0029 3.3148 36 1 4.9191 3.9088 4.9788 37 1 3.4108 6.3393 5.3981 38 1 4.6018 5.7108 6.6152 39 1 -0.7972 5.5305 8.3551 40 1 4.0349 3.2569 7.1741 41 1 2.5794 2.7441 6.2176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031987753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:01 Heat of formation + Delta-G solvation = -0.565049 kcal Electronic energy + Delta-G solvation = -22092.551327 eV Core-core repulsion = 18782.171093 eV Total energy + Delta-G solvation = -3310.380233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66226 -39.10309 -38.21002 -34.54224 -33.88910 -32.66609 -32.24740 -29.19591 -28.59641 -26.12597 -25.32637 -23.60421 -22.56140 -21.79823 -20.27787 -20.06254 -19.05378 -17.56657 -17.32111 -16.74582 -16.18062 -15.87100 -15.48635 -15.16758 -14.91557 -14.11162 -14.03066 -13.91002 -13.52841 -13.31759 -13.24821 -12.72772 -12.38371 -12.06275 -11.79869 -11.68544 -11.61637 -11.52948 -11.20998 -11.06236 -10.81852 -10.46195 -10.13540 -9.92997 -9.84763 -9.57100 -9.51182 -9.19266 -8.89353 -8.71153 -7.19035 -6.30090 -3.22172 1.99653 2.63412 3.15045 3.38073 3.44977 3.60099 3.78060 4.18609 4.41583 4.44033 4.58537 4.75602 4.80000 4.88067 4.92191 4.95238 5.04330 5.16774 5.22445 5.36886 5.39747 5.44116 5.63100 5.64553 5.71091 5.85523 5.89711 6.12422 6.20140 6.28691 6.35575 6.36964 6.38935 6.51852 6.55477 6.64175 6.84090 7.12464 7.54564 8.24456 8.25382 8.98028 9.51255 10.37114 11.19970 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.004124 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.994426 B = 6787.638896 C = 7339.576619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C 0.113 3.887 4 H 0.122 0.878 5 O -0.363 6.363 6 C 0.045 3.955 7 C -0.144 4.144 8 C -0.139 4.139 9 H 0.112 0.888 10 C 0.520 3.480 11 O -0.534 6.534 12 N -0.722 5.722 13 C 0.146 3.854 14 C -0.146 4.146 15 C 0.127 3.873 16 N -0.623 5.623 17 C -0.305 4.305 18 H 0.082 0.918 19 C -0.024 4.024 20 N -0.932 5.932 21 Si 1.063 2.937 22 H -0.294 1.294 23 H -0.295 1.295 24 H -0.283 1.283 25 C 0.104 3.896 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.046 0.954 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.670 -10.650 -16.581 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C 0.055 3.945 4 H 0.140 0.860 5 O -0.281 6.281 6 C -0.032 4.032 7 C -0.182 4.182 8 C -0.160 4.160 9 H 0.130 0.870 10 C 0.305 3.695 11 O -0.411 6.411 12 N -0.373 5.373 13 C 0.023 3.977 14 C -0.166 4.166 15 C 0.000 4.000 16 N -0.351 5.351 17 C -0.432 4.432 18 H 0.099 0.901 19 C -0.223 4.223 20 N -0.574 5.574 21 Si 0.895 3.105 22 H -0.222 1.222 23 H -0.223 1.223 24 H -0.209 1.209 25 C -0.021 4.021 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.403 -11.342 -16.196 22.825 hybrid contribution 0.848 1.011 0.002 1.320 sum 12.251 -10.331 -16.194 22.783 Atomic orbital electron populations 1.23966 0.95851 1.02426 0.97823 1.23256 0.96481 0.98192 1.02102 1.21900 0.92216 0.97007 0.83394 0.86027 1.88985 1.21360 1.84759 1.33022 1.23564 0.86703 0.98314 0.94579 1.23153 0.94672 1.03281 0.97108 1.22712 0.96918 0.98239 0.98161 0.87010 1.20145 0.81422 0.86917 0.80984 1.90705 1.32127 1.49690 1.68597 1.46007 1.40447 1.26334 1.24492 1.21076 1.00619 0.85703 0.90291 1.23164 0.97911 1.01121 0.94376 1.22329 0.91399 0.94043 0.92246 1.46270 1.22178 1.01721 1.64965 1.20142 0.98372 0.97323 1.27343 0.90062 1.25754 0.95313 1.04282 0.96938 1.70883 1.13254 1.21871 1.51395 0.83770 0.74991 0.75445 0.76342 1.22232 1.22284 1.20903 1.22762 0.95018 0.91592 0.92771 0.88027 0.87954 0.87248 0.91954 0.88671 0.89766 0.89188 0.76784 0.89796 0.91567 0.90360 0.93423 0.94282 0.92804 0.93630 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 14.32 29.01 0.42 -1.25 16 2 C -0.18 -1.89 8.87 -36.03 -0.32 -2.21 16 3 C 0.11 1.35 3.45 -27.31 -0.09 1.25 16 4 H 0.12 1.77 6.11 -51.93 -0.32 1.45 16 5 O -0.36 -4.38 11.18 -35.23 -0.39 -4.78 16 6 C 0.05 0.36 7.66 38.21 0.29 0.66 16 7 C -0.14 -1.11 6.69 -24.72 -0.17 -1.28 16 8 C -0.14 -1.45 3.06 -90.24 -0.28 -1.72 16 9 H 0.11 0.98 7.69 -51.93 -0.40 0.58 16 10 C 0.52 7.40 7.02 -10.98 -0.08 7.32 16 11 O -0.53 -9.95 15.26 5.56 0.08 -9.87 16 12 N -0.72 -9.41 5.54 -60.29 -0.33 -9.75 16 13 C 0.15 2.37 5.51 -4.04 -0.02 2.35 16 14 C -0.15 -2.30 4.17 -89.98 -0.37 -2.67 16 15 C 0.13 2.39 8.25 -8.52 -0.07 2.32 16 16 N -0.62 -15.02 3.46 -184.62 -0.64 -15.66 16 17 C -0.31 -8.82 11.03 -15.06 -0.17 -8.98 16 18 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 19 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 20 N -0.93 -29.71 13.70 55.49 0.76 -28.95 16 21 Si 1.06 26.56 25.50 -169.99 -4.34 22.22 16 22 H -0.29 -7.08 6.97 56.52 0.39 -6.69 16 23 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.28 -6.46 5.66 56.52 0.32 -6.14 16 25 C 0.10 2.08 5.13 -8.38 -0.04 2.04 16 26 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 27 H 0.10 1.10 7.85 -52.49 -0.41 0.69 16 28 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.72 7.86 -51.93 -0.41 0.31 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 34 H 0.08 1.73 7.93 -51.93 -0.41 1.32 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 40 H 0.05 0.88 7.02 -51.93 -0.36 0.52 16 41 H 0.05 1.08 6.21 -51.93 -0.32 0.76 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -35.20 334.06 -7.27 -42.47 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.45 Total: 2.25 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.00 Total: -2.98 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.21 Total: -54.36 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.31 Total: -14.64 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -4.34 Total: 22.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.20 -7.27 -42.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031987753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.910 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds