Wall clock time and date at job start Tue Mar 31 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50701 * 120.00055 * 2 1 4 4 H 1.08998 * 109.86953 * 358.99061 * 3 2 1 5 5 O 1.43740 * 109.87731 * 237.82731 * 3 2 1 6 6 C 1.44384 * 106.97652 * 267.09296 * 5 3 2 7 7 C 1.54992 * 103.48773 * 319.93641 * 6 5 3 8 8 C 1.54101 * 109.87600 * 119.99986 * 3 2 1 9 9 H 1.08999 * 110.49080 * 358.58073 * 8 3 2 10 10 C 1.50710 * 110.48450 * 236.06703 * 8 3 2 11 11 O 1.21275 * 119.99776 * 0.02562 * 10 8 3 12 12 N 1.34773 * 119.99941 * 179.97438 * 10 8 3 13 13 C 1.46498 * 120.00032 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47317 * 180.02562 * 13 12 10 15 15 C 1.53492 * 114.20686 * 174.99874 * 14 13 12 16 16 N 1.47064 * 87.98473 * 87.71658 * 15 14 13 17 17 C 1.36932 * 136.05908 * 207.07584 * 16 15 14 18 18 H 1.08001 * 119.99827 * 7.83717 * 17 16 15 19 19 C 1.38814 * 120.00431 * 187.82899 * 17 16 15 20 20 N 1.31616 * 120.00175 * 195.17932 * 19 17 16 21 21 Si 1.86806 * 119.99385 * 15.17320 * 19 17 16 22 22 H 1.48498 * 109.47209 * 269.99718 * 21 19 17 23 23 H 1.48504 * 109.46570 * 150.00045 * 21 19 17 24 24 H 1.48495 * 109.47319 * 30.00294 * 21 19 17 25 25 C 1.47071 * 87.88256 * 27.34384 * 16 15 14 26 26 H 1.07997 * 120.00039 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99554 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99720 * 179.97438 * 2 1 3 29 29 H 1.08994 * 110.61816 * 78.44237 * 6 5 3 30 30 H 1.09001 * 110.61431 * 201.28255 * 6 5 3 31 31 H 1.09000 * 110.91246 * 278.82820 * 7 6 5 32 32 H 1.09003 * 110.90715 * 155.22119 * 7 6 5 33 33 H 0.97006 * 120.00014 * 0.02562 * 12 10 8 34 34 H 1.08996 * 109.47137 * 60.00015 * 13 12 10 35 35 H 1.09003 * 109.46989 * 300.00051 * 13 12 10 36 36 H 1.09000 * 113.27906 * 41.93201 * 14 13 12 37 37 H 1.08994 * 113.46766 * 332.93768 * 15 14 13 38 38 H 1.09003 * 113.52103 * 202.50483 * 15 14 13 39 39 H 0.96991 * 120.00289 * 354.90059 * 20 19 17 40 40 H 1.09000 * 113.46667 * 87.43925 * 25 16 15 41 41 H 1.09001 * 113.46589 * 217.87539 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3612 2.1384 -0.0181 5 8 2.9313 1.3685 -1.1442 6 6 4.2187 0.8667 -0.7253 7 6 4.3946 1.4631 0.6945 8 6 2.9531 1.3965 1.2551 9 1 2.8246 0.5120 1.8790 10 6 2.6335 2.6439 2.0382 11 8 1.7743 3.4037 1.6443 12 7 3.3019 2.9144 3.1769 13 6 2.9910 4.1266 3.9385 14 6 3.8860 4.1941 5.1775 15 6 3.7355 5.4857 5.9930 16 7 2.6409 4.8332 6.7271 17 6 1.5180 5.2449 7.3940 18 1 1.2134 6.2802 7.3508 19 6 0.7712 4.3317 8.1256 20 7 -0.4478 4.6399 8.5147 21 14 1.4964 2.6652 8.5576 22 1 1.1744 1.6917 7.4834 23 1 0.9205 2.1929 9.8424 24 1 2.9704 2.7862 8.6906 25 6 3.2866 3.5444 6.4355 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 4.2119 -0.2225 -0.6860 30 1 5.0043 1.2206 -1.3929 31 1 4.7446 2.4941 0.6427 32 1 5.0726 0.8531 1.2914 33 1 3.9890 2.3064 3.4921 34 1 1.9455 4.1043 4.2458 35 1 3.1678 5.0029 3.3148 36 1 4.9191 3.9088 4.9788 37 1 3.4108 6.3393 5.3981 38 1 4.6018 5.7108 6.6152 39 1 -0.7972 5.5305 8.3551 40 1 4.0349 3.2569 7.1741 41 1 2.5794 2.7441 6.2176 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031987753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:00 Heat of formation + Delta-G solvation = -28.213873 kcal Electronic energy + Delta-G solvation = -22093.750270 eV Core-core repulsion = 18782.171093 eV Total energy + Delta-G solvation = -3311.579176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64424 -40.46573 -39.40400 -35.85673 -34.69398 -34.54975 -33.32566 -30.71977 -29.53266 -27.67693 -26.89278 -24.64082 -23.63207 -23.16894 -21.44272 -20.90250 -20.56347 -19.43189 -18.40525 -17.68364 -17.11175 -17.06732 -16.85598 -16.43100 -16.07980 -15.81521 -15.32786 -15.21663 -14.86038 -14.66929 -14.10882 -14.01241 -13.46676 -13.23544 -13.17067 -12.91160 -12.79910 -12.56060 -12.47034 -12.22706 -12.00539 -11.88244 -11.86246 -11.41487 -11.10386 -10.93815 -10.81363 -10.69962 -10.39869 -10.14221 -9.22095 -8.62632 -5.45286 1.20658 1.37072 1.50594 1.53979 1.65565 2.06430 2.55613 3.05323 3.08076 3.17022 3.40593 3.46098 3.63114 3.66133 3.84866 4.11797 4.19933 4.23689 4.28528 4.41846 4.47040 4.54805 4.69295 4.72443 4.75154 4.76358 4.84814 4.85880 4.89860 4.97516 5.02224 5.07425 5.24704 5.30699 5.49423 5.57098 5.77417 5.90782 5.96315 6.51860 6.70752 7.20813 7.35412 8.29988 8.89214 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.004124 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.994426 B = 6787.638896 C = 7339.576619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C 0.108 3.892 4 H 0.082 0.918 5 O -0.391 6.391 6 C 0.038 3.962 7 C -0.135 4.135 8 C -0.130 4.130 9 H 0.139 0.861 10 C 0.514 3.486 11 O -0.589 6.589 12 N -0.705 5.705 13 C 0.153 3.847 14 C -0.108 4.108 15 C 0.120 3.880 16 N -0.661 5.661 17 C -0.291 4.291 18 H 0.042 0.958 19 C -0.090 4.090 20 N -0.973 5.973 21 Si 1.105 2.895 22 H -0.281 1.281 23 H -0.305 1.305 24 H -0.242 1.242 25 C 0.096 3.904 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.420 0.580 34 H 0.030 0.970 35 H 0.065 0.935 36 H 0.140 0.860 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.244 0.756 40 H 0.071 0.929 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.049 -13.757 -17.328 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.199 4.199 3 C 0.049 3.951 4 H 0.100 0.900 5 O -0.310 6.310 6 C -0.038 4.038 7 C -0.172 4.172 8 C -0.151 4.151 9 H 0.156 0.844 10 C 0.302 3.698 11 O -0.470 6.470 12 N -0.358 5.358 13 C 0.029 3.971 14 C -0.127 4.127 15 C -0.005 4.005 16 N -0.390 5.390 17 C -0.419 4.419 18 H 0.060 0.940 19 C -0.281 4.281 20 N -0.619 5.619 21 Si 0.930 3.070 22 H -0.208 1.208 23 H -0.234 1.234 24 H -0.166 1.166 25 C -0.028 4.028 26 H 0.141 0.859 27 H 0.101 0.899 28 H 0.155 0.845 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.258 0.742 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.881 -14.456 -16.974 27.374 hybrid contribution -0.487 2.127 0.100 2.185 sum 15.394 -12.328 -16.875 25.956 Atomic orbital electron populations 1.24107 0.96259 1.02628 0.98232 1.23379 0.96435 0.98359 1.01708 1.21783 0.92311 0.96546 0.84410 0.90045 1.88954 1.23173 1.85457 1.33432 1.23873 0.85198 0.99700 0.95029 1.23209 0.93114 1.03668 0.97234 1.22734 0.98532 0.96663 0.97194 0.84377 1.20922 0.80347 0.87571 0.81009 1.90696 1.34514 1.51799 1.69960 1.45779 1.40658 1.25614 1.23701 1.20757 0.97961 0.87267 0.91162 1.22926 1.00312 0.97688 0.91785 1.22635 0.90336 0.95324 0.92240 1.46338 1.22765 1.05242 1.64695 1.19961 1.00363 0.95547 1.26016 0.94039 1.27212 0.95036 1.08400 0.97484 1.71008 1.15251 1.21110 1.54494 0.83305 0.76551 0.71360 0.75786 1.20803 1.23351 1.16626 1.23062 0.94963 0.89676 0.95108 0.85869 0.89860 0.84487 0.89701 0.87224 0.90677 0.85135 0.74170 0.95111 0.91676 0.84286 0.94133 0.91434 0.94734 0.91106 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 14.32 67.77 0.97 -2.53 16 2 C -0.18 -3.46 8.87 25.64 0.23 -3.23 16 3 C 0.11 2.50 3.45 30.22 0.10 2.61 16 4 H 0.08 2.54 6.11 -2.39 -0.01 2.53 16 5 O -0.39 -8.96 11.18 -148.98 -1.66 -10.63 16 6 C 0.04 0.47 7.66 72.66 0.56 1.03 16 7 C -0.13 -1.51 6.69 31.89 0.21 -1.30 16 8 C -0.13 -2.37 3.06 -10.55 -0.03 -2.40 16 9 H 0.14 1.82 7.69 -2.39 -0.02 1.80 16 10 C 0.51 14.07 7.02 87.66 0.62 14.69 16 11 O -0.59 -22.82 15.26 -3.01 -0.05 -22.87 16 12 N -0.71 -16.40 5.54 -463.06 -2.57 -18.96 16 13 C 0.15 4.73 5.51 86.38 0.48 5.21 16 14 C -0.11 -2.94 4.17 -10.38 -0.04 -2.98 16 15 C 0.12 4.20 8.25 83.17 0.69 4.89 16 16 N -0.66 -31.21 3.46 -738.02 -2.56 -33.77 16 17 C -0.29 -17.31 11.03 84.03 0.93 -16.38 16 18 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 19 C -0.09 -5.51 5.50 84.86 0.47 -5.04 16 20 N -0.97 -64.96 13.70 21.65 0.30 -64.66 16 21 Si 1.11 53.03 25.50 68.60 1.75 54.78 16 22 H -0.28 -12.74 6.97 99.48 0.69 -12.04 16 23 H -0.31 -15.02 7.11 99.48 0.71 -14.32 16 24 H -0.24 -9.89 5.66 99.48 0.56 -9.32 16 25 C 0.10 3.48 5.13 83.26 0.43 3.91 16 26 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 27 H 0.08 1.94 7.85 -2.91 -0.02 1.92 16 28 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.01 7.86 -2.39 -0.02 0.99 16 32 H 0.13 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.42 5.99 8.47 -92.70 -0.79 5.21 16 34 H 0.03 1.29 7.93 -2.39 -0.02 1.27 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.24 16.44 8.73 -92.71 -0.81 15.63 16 40 H 0.07 2.29 7.02 -2.39 -0.02 2.28 16 41 H 0.04 1.57 6.21 -2.39 -0.01 1.55 16 Total: -1.00 -84.70 334.06 0.84 -83.86 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.04 Total: 13.79 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.60 Total: -1.53 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -4.83 Total: -117.39 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.71 Total: -33.50 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 1.75 Total: 54.78 kcal Total: -84.70 0.84 -83.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031987753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.646 kcal (2) G-P(sol) polarization free energy of solvation -84.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds