Wall clock time and date at job start Tue Mar 31 2020 01:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 119.99521 * 2 1 4 4 C 1.50704 * 120.00263 * 0.02562 * 3 2 1 5 5 C 1.47102 * 120.00153 * 180.02562 * 3 2 1 6 6 O 1.21613 * 119.99983 * 261.67060 * 5 3 2 7 7 N 1.34780 * 120.00184 * 81.66452 * 5 3 2 8 8 C 1.47129 * 121.05673 * 5.47640 * 7 5 3 9 9 C 1.53230 * 108.72563 * 127.72451 * 8 7 5 10 10 O 1.43107 * 109.35406 * 54.19413 * 9 8 7 11 11 C 1.42359 * 113.99486 * 300.22304 * 10 9 8 12 12 C 1.52924 * 114.29389 * 285.04940 * 11 10 9 13 13 N 1.47160 * 87.84756 * 271.72020 * 12 11 10 14 14 C 1.36934 * 135.99713 * 153.32550 * 13 12 11 15 15 H 1.07995 * 120.00350 * 354.14627 * 14 13 12 16 16 C 1.38810 * 119.99634 * 174.15114 * 14 13 12 17 17 N 1.31620 * 120.00001 * 185.39221 * 16 14 13 18 18 Si 1.86803 * 120.00401 * 5.39297 * 16 14 13 19 19 H 1.48497 * 109.47297 * 185.43662 * 18 16 14 20 20 H 1.48501 * 109.46888 * 305.43389 * 18 16 14 21 21 H 1.48497 * 109.47036 * 65.43281 * 18 16 14 22 22 C 1.47183 * 88.00030 * 333.58081 * 13 12 11 23 23 C 1.47356 * 121.06309 * 185.49467 * 7 5 3 24 24 H 1.08999 * 109.47490 * 59.99979 * 1 2 3 25 25 H 1.09005 * 109.46616 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47117 * 299.99559 * 1 2 3 27 27 H 1.07996 * 120.00581 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46368 * 275.45837 * 4 3 2 29 29 H 1.08997 * 109.47032 * 35.45489 * 4 3 2 30 30 H 1.09001 * 109.47427 * 155.46104 * 4 3 2 31 31 H 1.09002 * 109.59288 * 247.49331 * 8 7 5 32 32 H 1.08997 * 109.59696 * 7.95031 * 8 7 5 33 33 H 1.09002 * 109.48531 * 174.15704 * 9 8 7 34 34 H 1.08997 * 109.48784 * 294.20296 * 9 8 7 35 35 H 1.09000 * 113.48887 * 156.97320 * 12 11 10 36 36 H 1.09000 * 113.54408 * 26.47635 * 12 11 10 37 37 H 0.97004 * 120.00346 * 354.98294 * 17 16 14 38 38 H 1.09003 * 113.48750 * 141.16696 * 22 13 12 39 39 H 1.08997 * 113.48874 * 271.68344 * 22 13 12 40 40 H 1.09007 * 109.74530 * 108.59280 * 23 7 5 41 41 H 1.09001 * 109.79014 * 347.89203 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4183 2.4569 0.0006 5 6 3.6429 1.1520 -0.0006 6 8 4.2513 1.3044 1.0413 7 7 4.3164 0.9831 -1.1557 8 6 3.6089 0.9161 -2.4440 9 6 4.2421 1.9267 -3.4062 10 8 5.6506 1.6866 -3.4867 11 6 6.3296 1.8016 -2.2408 12 6 6.5263 3.2406 -1.7620 13 7 7.7860 3.2627 -2.5225 14 6 8.5560 4.2214 -3.1251 15 1 8.2063 5.2419 -3.1756 16 6 9.7861 3.8814 -3.6710 17 7 10.5730 4.8189 -4.1551 18 14 10.3248 2.0934 -3.7188 19 1 11.7184 2.0096 -4.2248 20 1 10.2597 1.5201 -2.3505 21 1 9.4245 1.3291 -4.6191 22 6 7.8517 1.8017 -2.3568 23 6 5.7847 0.8593 -1.1687 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 2.0471 -0.9352 0.0004 28 1 1.1516 2.7228 -1.0223 29 1 0.5119 2.3529 0.5970 30 1 2.0463 3.2390 0.4273 31 1 3.6980 -0.0882 -2.8582 32 1 2.5571 1.1612 -2.2967 33 1 3.7971 1.8155 -4.3949 34 1 4.0655 2.9378 -3.0394 35 1 6.6678 3.3244 -0.6844 36 1 5.7760 3.9329 -2.1438 37 1 10.2642 5.7375 -4.1970 38 1 8.2185 1.2803 -3.2410 39 1 8.3571 1.4904 -1.4427 40 1 6.0656 -0.1674 -1.4034 41 1 6.1871 1.1376 -0.1947 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053210829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:28 Heat of formation + Delta-G solvation = 12.765479 kcal Electronic energy + Delta-G solvation = -22950.505506 eV Core-core repulsion = 19640.703327 eV Total energy + Delta-G solvation = -3309.802178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.73936 -39.19501 -36.62925 -35.88867 -34.59113 -32.45230 -30.48176 -29.67607 -28.26359 -26.84431 -25.67654 -25.49567 -23.45741 -21.98753 -20.59501 -19.13341 -18.45832 -17.49423 -17.09847 -16.59357 -16.02245 -15.78869 -15.10375 -14.75546 -14.52431 -14.14224 -14.11234 -13.85113 -13.44877 -13.34326 -13.06941 -12.93008 -12.81386 -12.64479 -12.29939 -12.15242 -11.73848 -11.65981 -11.38511 -11.12065 -10.78657 -10.49291 -10.44030 -9.96850 -9.81025 -9.24290 -9.18853 -9.06217 -8.87637 -8.48954 -7.12207 -6.28217 -3.19052 1.49326 2.46503 2.86197 3.43725 3.48903 3.66919 3.81913 4.23926 4.59521 4.63194 4.63344 4.78556 4.84327 4.87722 4.90307 5.02972 5.08657 5.17243 5.19801 5.34165 5.38896 5.50461 5.53774 5.55709 5.61012 5.65181 5.72505 5.84202 6.05267 6.08894 6.15750 6.19593 6.25058 6.30229 6.38366 6.50583 7.08317 7.24067 7.51581 8.01833 8.26038 9.00439 9.52671 10.36697 11.24616 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035500 B = 0.004411 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.537588 B = 6346.783586 C = 6356.183675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C -0.161 4.161 4 C -0.108 4.108 5 C 0.558 3.442 6 O -0.535 6.535 7 N -0.607 5.607 8 C 0.076 3.924 9 C 0.046 3.954 10 O -0.335 6.335 11 C 0.058 3.942 12 C 0.107 3.893 13 N -0.618 5.618 14 C -0.300 4.300 15 H 0.082 0.918 16 C -0.025 4.025 17 N -0.936 5.936 18 Si 1.069 2.931 19 H -0.294 1.294 20 H -0.287 1.287 21 H -0.290 1.290 22 C 0.115 3.885 23 C 0.100 3.900 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.260 0.740 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 -11.311 5.419 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C -0.164 4.164 4 C -0.165 4.165 5 C 0.346 3.654 6 O -0.412 6.412 7 N -0.340 5.340 8 C -0.047 4.047 9 C -0.032 4.032 10 O -0.253 6.253 11 C 0.016 3.984 12 C -0.020 4.020 13 N -0.346 5.346 14 C -0.426 4.426 15 H 0.100 0.900 16 C -0.223 4.223 17 N -0.578 5.578 18 Si 0.902 3.098 19 H -0.222 1.222 20 H -0.214 1.214 21 H -0.218 1.218 22 C -0.011 4.011 23 C -0.023 4.023 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.227 -12.044 5.272 24.124 hybrid contribution -1.450 1.100 0.589 1.913 sum -21.677 -10.944 5.861 24.980 Atomic orbital electron populations 1.20874 0.91992 1.02733 1.02407 1.23214 0.96526 0.96682 0.97592 1.21394 0.92579 0.97264 1.05169 1.20733 0.99703 0.93588 1.02449 1.18588 0.87743 0.75838 0.83206 1.90819 1.69777 1.49126 1.31437 1.48222 1.07492 1.71957 1.06353 1.22426 0.97167 1.01114 0.83971 1.22919 0.82823 0.97639 0.99824 1.87991 1.18250 1.90684 1.28365 1.23052 0.94828 0.96025 0.84501 1.22806 0.89986 0.93468 0.95723 1.45787 1.25585 1.01955 1.61301 1.20111 1.00052 0.89309 1.33096 0.89987 1.25732 0.91824 1.06443 0.98293 1.70924 1.35530 1.01782 1.49601 0.83718 0.75246 0.74669 0.76172 1.22174 1.21358 1.21803 1.22641 0.89819 0.88272 1.00380 1.22183 0.78745 1.00131 1.01263 0.91007 0.91673 0.91003 0.86852 0.90790 0.90772 0.91366 0.90443 0.88922 0.87707 0.92579 0.93490 0.93628 0.92999 0.91706 0.91985 0.90523 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 8.98 36.00 0.32 -0.35 16 2 C -0.12 -1.00 9.93 -36.13 -0.36 -1.36 16 3 C -0.16 -1.66 3.78 -102.84 -0.39 -2.05 16 4 C -0.11 -0.90 9.45 36.01 0.34 -0.56 16 5 C 0.56 7.88 7.06 -12.66 -0.09 7.79 16 6 O -0.53 -9.69 16.60 5.27 0.09 -9.60 16 7 N -0.61 -8.14 3.03 -173.87 -0.53 -8.67 16 8 C 0.08 0.80 6.47 -3.58 -0.02 0.78 16 9 C 0.05 0.59 6.90 37.28 0.26 0.84 16 10 O -0.34 -6.09 10.53 -35.23 -0.37 -6.46 16 11 C 0.06 1.07 1.27 -90.96 -0.12 0.96 16 12 C 0.11 2.26 7.91 -8.21 -0.06 2.20 16 13 N -0.62 -15.93 3.70 -184.94 -0.68 -16.62 16 14 C -0.30 -8.96 11.08 -15.06 -0.17 -9.13 16 15 H 0.08 2.58 8.05 -52.49 -0.42 2.15 16 16 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 17 N -0.94 -30.23 13.70 55.49 0.76 -29.47 16 18 Si 1.07 27.42 25.15 -169.99 -4.27 23.14 16 19 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 20 H -0.29 -6.76 6.17 56.52 0.35 -6.41 16 21 H -0.29 -7.11 6.54 56.52 0.37 -6.74 16 22 C 0.11 2.52 5.09 -8.34 -0.04 2.48 16 23 C 0.10 1.53 5.85 -3.69 -0.02 1.51 16 24 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.38 7.41 -51.93 -0.38 -0.01 16 27 H 0.11 0.94 8.05 -52.49 -0.42 0.52 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 6.71 -51.93 -0.35 0.14 16 30 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.75 6.43 -51.93 -0.33 0.41 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.75 7.30 -51.93 -0.38 0.38 16 35 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 36 H 0.05 0.96 7.36 -51.93 -0.38 0.57 16 37 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 38 H 0.07 1.48 4.70 -51.93 -0.24 1.24 16 39 H 0.06 1.28 7.61 -51.93 -0.40 0.89 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 1.72 6.87 -51.93 -0.36 1.37 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -36.19 325.87 -6.82 -43.00 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.27 Total: -2.51 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.45 Total: 2.27 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.45 Total: -54.76 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.28 Total: -16.06 kcal Atomic # 14 Polarization: 27.42 SS G_CDS: -4.27 Total: 23.14 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.19 -6.82 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053210829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.770 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds