Wall clock time and date at job start Tue Mar 31 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47295 * 2 1 4 4 C 1.53004 * 109.47141 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.37100 * 120.00110 * 270.00255 * 5 4 3 7 7 H 1.07994 * 119.99779 * 138.59991 * 6 5 4 8 8 C 1.38949 * 119.99698 * 318.60257 * 6 5 4 9 9 N 1.31411 * 120.00424 * 352.33377 * 8 6 5 10 10 Si 1.86799 * 119.99800 * 172.32850 * 8 6 5 11 11 H 1.48507 * 109.46830 * 90.00255 * 10 8 6 12 12 H 1.48499 * 109.47370 * 209.99750 * 10 8 6 13 13 H 1.48491 * 109.47334 * 330.00260 * 10 8 6 14 14 C 1.34779 * 119.99754 * 90.00560 * 5 4 3 15 15 O 1.21288 * 119.99985 * 355.61404 * 14 5 4 16 16 C 1.50702 * 119.99775 * 175.89882 * 14 5 4 17 17 C 1.50698 * 109.46999 * 184.90475 * 16 14 5 18 18 C 1.41377 * 128.00731 * 90.00063 * 17 16 14 19 19 C 1.50691 * 126.80506 * 359.93947 * 18 17 16 20 20 N 1.30184 * 106.39215 * 179.97438 * 18 17 16 21 21 O 1.20916 * 111.60343 * 359.97438 * 20 18 17 22 22 C 1.34041 * 111.57093 * 359.76336 * 21 20 18 23 23 C 1.50704 * 126.77803 * 180.28503 * 22 21 20 24 24 H 1.08998 * 109.47160 * 299.99856 * 1 2 3 25 25 H 1.09003 * 109.46819 * 59.99689 * 1 2 3 26 26 H 1.08996 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46780 * 239.99467 * 2 1 3 28 28 H 1.09003 * 109.46819 * 120.00311 * 2 1 3 29 29 H 1.08998 * 109.46899 * 59.99984 * 3 2 1 30 30 H 1.08994 * 109.47353 * 300.00195 * 3 2 1 31 31 H 1.09004 * 109.46556 * 60.00139 * 4 3 2 32 32 H 1.08998 * 109.46808 * 300.00154 * 4 3 2 33 33 H 0.97000 * 120.00748 * 185.00748 * 9 8 6 34 34 H 1.09001 * 109.46859 * 304.90444 * 16 14 5 35 35 H 1.09003 * 109.46993 * 64.89950 * 16 14 5 36 36 H 1.08998 * 109.47261 * 90.00293 * 19 18 17 37 37 H 1.09007 * 109.47485 * 210.00759 * 19 18 17 38 38 H 1.09010 * 109.47180 * 329.99948 * 19 18 17 39 39 H 1.09006 * 109.46688 * 270.11259 * 23 22 21 40 40 H 1.08995 * 109.47186 * 30.11154 * 23 22 21 41 41 H 1.08998 * 109.46722 * 150.11742 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.2874 3.4703 -1.1858 7 1 3.9969 4.5039 -1.3023 8 6 4.8933 2.7958 -2.2387 9 7 5.3825 1.5905 -2.0523 10 14 5.0122 3.6024 -3.9194 11 1 6.2788 4.3723 -4.0104 12 1 4.9921 2.5562 -4.9731 13 1 3.8604 4.5198 -4.1108 14 6 4.2827 3.4585 1.1688 15 8 4.0053 2.9157 2.2173 16 6 4.8721 4.8455 1.1711 17 6 5.1326 5.2782 2.5910 18 6 6.3071 5.0931 3.3558 19 6 7.5752 4.4107 2.9121 20 7 6.0757 5.6284 4.5198 21 8 4.9644 6.1012 4.5793 22 6 4.2980 5.9403 3.4275 23 6 2.8959 6.4021 3.1241 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.9337 0.9284 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 5.8692 1.1488 -2.7657 34 1 5.8091 4.8430 0.6143 35 1 4.1729 5.5382 0.7026 36 1 8.2450 5.1445 2.4637 37 1 8.0620 3.9529 3.7733 38 1 7.3360 3.6409 2.1783 39 1 2.1889 5.6168 3.3917 40 1 2.6765 7.3005 3.7009 41 1 2.8083 6.6228 2.0603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142202875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:53 Heat of formation + Delta-G solvation = 1.385744 kcal Electronic energy + Delta-G solvation = -22634.765486 eV Core-core repulsion = 19324.469845 eV Total energy + Delta-G solvation = -3310.295641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.42971 -38.64988 -35.60601 -34.53577 -33.93523 -33.19658 -31.50565 -29.69070 -28.30541 -28.02712 -26.56376 -24.93811 -22.94795 -21.27183 -20.36302 -19.72113 -19.10109 -17.33777 -16.84288 -16.28396 -15.87540 -14.82342 -14.62828 -14.34216 -14.22419 -13.80200 -13.39092 -13.12744 -12.95811 -12.88034 -12.58515 -12.50578 -12.23375 -12.14951 -12.03047 -11.66400 -11.51370 -11.31817 -11.19725 -10.97242 -10.58868 -10.49057 -10.46297 -10.30218 -10.22622 -9.71285 -9.41100 -9.13965 -8.78254 -8.33114 -7.47320 -6.36797 -4.21079 1.92501 2.68756 3.05889 3.15868 3.17423 3.54632 3.86521 4.05626 4.61940 4.83203 4.88767 4.95763 5.32007 5.43918 5.50417 5.56949 5.61950 5.67009 5.68669 5.80166 5.83601 6.00821 6.08735 6.11370 6.19920 6.24390 6.26098 6.35848 6.40890 6.45417 6.46783 6.60599 6.71911 6.77724 6.87411 7.17119 7.29439 7.59219 7.96475 8.35422 8.72441 9.02591 9.48146 9.91813 10.60879 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.006147 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.627582 B = 4554.079873 C = 5726.531174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.108 3.892 5 N -0.440 5.440 6 C -0.336 4.336 7 H 0.086 0.914 8 C 0.046 3.954 9 N -0.867 5.867 10 Si 0.917 3.083 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.475 3.525 15 O -0.598 6.598 16 C -0.047 4.047 17 C -0.159 4.159 18 C 0.031 3.969 19 C -0.074 4.074 20 N -0.379 5.379 21 O 0.087 5.913 22 C -0.036 4.036 23 C -0.067 4.067 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.271 0.729 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 4.787 2.032 6.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.016 4.016 5 N -0.158 5.158 6 C -0.464 4.464 7 H 0.104 0.896 8 C -0.160 4.160 9 N -0.505 5.505 10 Si 0.743 3.257 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.264 3.736 15 O -0.484 6.484 16 C -0.087 4.087 17 C -0.163 4.163 18 C -0.127 4.127 19 C -0.132 4.132 20 N -0.087 5.087 21 O 0.024 5.976 22 C -0.099 4.099 23 C -0.124 4.124 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.600 4.454 3.505 6.236 hybrid contribution -0.117 0.117 -1.730 1.738 sum -2.717 4.571 1.775 5.606 Atomic orbital electron populations 1.21757 0.96741 1.00617 1.01401 1.21428 0.94866 0.97911 1.01542 1.21878 0.98206 0.95284 1.01021 1.21619 0.91001 0.85034 1.03908 1.43409 1.56025 1.12163 1.04194 1.19432 1.39953 0.97552 0.89451 0.89602 1.25475 0.94833 0.95641 1.00036 1.69647 1.33631 1.13067 1.34110 0.86090 0.78938 0.78940 0.81750 1.20153 1.20735 1.19346 1.20268 0.81394 0.87919 0.84063 1.90546 1.56862 1.69021 1.31940 1.19719 1.03209 0.96272 0.89523 1.20617 0.93395 1.03295 0.99030 1.23343 0.98577 1.00590 0.90229 1.20138 0.91250 0.99829 1.01952 1.73718 0.98360 1.15472 1.21117 1.84691 1.19483 1.59736 1.33737 1.24037 0.97378 1.02537 0.85980 1.20242 0.87449 1.01764 1.02965 0.93162 0.93066 0.93483 0.92223 0.92550 0.93280 0.92424 0.86491 0.93385 0.91860 0.88182 0.89201 0.90539 0.91016 0.89659 0.89562 0.90525 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.53 5.54 -26.73 -0.15 -2.68 16 4 C 0.11 2.52 4.96 -4.04 -0.02 2.50 16 5 N -0.44 -10.58 2.52 -114.81 -0.29 -10.87 16 6 C -0.34 -7.97 8.49 -14.93 -0.13 -8.09 16 7 H 0.09 1.92 7.31 -52.49 -0.38 1.54 16 8 C 0.05 1.08 5.24 -17.47 -0.09 0.99 16 9 N -0.87 -21.79 10.93 55.50 0.61 -21.18 16 10 Si 0.92 18.44 29.56 -169.99 -5.03 13.41 16 11 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 14 C 0.48 11.13 7.61 -10.98 -0.08 11.05 16 15 O -0.60 -15.58 15.67 5.55 0.09 -15.50 16 16 C -0.05 -0.91 4.77 -29.03 -0.14 -1.05 16 17 C -0.16 -3.01 4.82 -104.42 -0.50 -3.52 16 18 C 0.03 0.59 7.33 -82.10 -0.60 -0.01 16 19 C -0.07 -1.19 10.39 36.00 0.37 -0.81 16 20 N -0.38 -7.27 12.07 33.42 0.40 -6.87 16 21 O 0.09 1.57 11.20 17.18 0.19 1.77 16 22 C -0.04 -0.62 7.49 -35.30 -0.26 -0.88 16 23 C -0.07 -0.85 10.30 36.01 0.37 -0.48 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.12 2.92 5.26 -51.93 -0.27 2.64 16 32 H 0.05 1.19 7.48 -51.93 -0.39 0.80 16 33 H 0.27 6.45 8.32 -40.82 -0.34 6.12 16 34 H 0.10 1.91 8.03 -51.93 -0.42 1.50 16 35 H 0.09 1.55 7.14 -51.93 -0.37 1.18 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.03 7.43 -51.93 -0.39 0.65 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -29.09 344.72 -6.28 -35.37 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.43 Total: 5.57 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.02 Total: -6.89 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.72 Total: -38.92 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.28 Total: -13.73 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.09 -6.28 -35.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142202875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.752 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds