Wall clock time and date at job start Tue Mar 31 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47295 * 2 1 4 4 C 1.53004 * 109.47141 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47005 * 180.02562 * 4 3 2 6 6 C 1.37100 * 120.00110 * 270.00255 * 5 4 3 7 7 H 1.07994 * 119.99779 * 138.59991 * 6 5 4 8 8 C 1.38949 * 119.99698 * 318.60257 * 6 5 4 9 9 N 1.31411 * 120.00424 * 352.33377 * 8 6 5 10 10 Si 1.86799 * 119.99800 * 172.32850 * 8 6 5 11 11 H 1.48507 * 109.46830 * 90.00255 * 10 8 6 12 12 H 1.48499 * 109.47370 * 209.99750 * 10 8 6 13 13 H 1.48491 * 109.47334 * 330.00260 * 10 8 6 14 14 C 1.34779 * 119.99754 * 90.00560 * 5 4 3 15 15 O 1.21288 * 119.99985 * 355.61404 * 14 5 4 16 16 C 1.50702 * 119.99775 * 175.89882 * 14 5 4 17 17 C 1.50698 * 109.46999 * 184.90475 * 16 14 5 18 18 C 1.41377 * 128.00731 * 90.00063 * 17 16 14 19 19 C 1.50691 * 126.80506 * 359.93947 * 18 17 16 20 20 N 1.30184 * 106.39215 * 179.97438 * 18 17 16 21 21 O 1.20916 * 111.60343 * 359.97438 * 20 18 17 22 22 C 1.34041 * 111.57093 * 359.76336 * 21 20 18 23 23 C 1.50704 * 126.77803 * 180.28503 * 22 21 20 24 24 H 1.08998 * 109.47160 * 299.99856 * 1 2 3 25 25 H 1.09003 * 109.46819 * 59.99689 * 1 2 3 26 26 H 1.08996 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46780 * 239.99467 * 2 1 3 28 28 H 1.09003 * 109.46819 * 120.00311 * 2 1 3 29 29 H 1.08998 * 109.46899 * 59.99984 * 3 2 1 30 30 H 1.08994 * 109.47353 * 300.00195 * 3 2 1 31 31 H 1.09004 * 109.46556 * 60.00139 * 4 3 2 32 32 H 1.08998 * 109.46808 * 300.00154 * 4 3 2 33 33 H 0.97000 * 120.00748 * 185.00748 * 9 8 6 34 34 H 1.09001 * 109.46859 * 304.90444 * 16 14 5 35 35 H 1.09003 * 109.46993 * 64.89950 * 16 14 5 36 36 H 1.08998 * 109.47261 * 90.00293 * 19 18 17 37 37 H 1.09007 * 109.47485 * 210.00759 * 19 18 17 38 38 H 1.09010 * 109.47180 * 329.99948 * 19 18 17 39 39 H 1.09006 * 109.46688 * 270.11259 * 23 22 21 40 40 H 1.08995 * 109.47186 * 30.11154 * 23 22 21 41 41 H 1.08998 * 109.46722 * 150.11742 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.2874 3.4703 -1.1858 7 1 3.9969 4.5039 -1.3023 8 6 4.8933 2.7958 -2.2387 9 7 5.3825 1.5905 -2.0523 10 14 5.0122 3.6024 -3.9194 11 1 6.2788 4.3723 -4.0104 12 1 4.9921 2.5562 -4.9731 13 1 3.8604 4.5198 -4.1108 14 6 4.2827 3.4585 1.1688 15 8 4.0053 2.9157 2.2173 16 6 4.8721 4.8455 1.1711 17 6 5.1326 5.2782 2.5910 18 6 6.3071 5.0931 3.3558 19 6 7.5752 4.4107 2.9121 20 7 6.0757 5.6284 4.5198 21 8 4.9644 6.1012 4.5793 22 6 4.2980 5.9403 3.4275 23 6 2.8959 6.4021 3.1241 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6768 1.9563 -0.8899 31 1 3.9337 0.9284 -0.8892 32 1 3.9330 0.9287 0.8908 33 1 5.8692 1.1488 -2.7657 34 1 5.8091 4.8430 0.6143 35 1 4.1729 5.5382 0.7026 36 1 8.2450 5.1445 2.4637 37 1 8.0620 3.9529 3.7733 38 1 7.3360 3.6409 2.1783 39 1 2.1889 5.6168 3.3917 40 1 2.6765 7.3005 3.7009 41 1 2.8083 6.6228 2.0603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142202875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:53 Heat of formation + Delta-G solvation = -13.446399 kcal Electronic energy + Delta-G solvation = -22635.408656 eV Core-core repulsion = 19324.469845 eV Total energy + Delta-G solvation = -3310.938811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.84265 -40.47825 -37.29757 -36.05754 -35.52200 -34.51998 -33.34920 -31.17280 -29.69817 -29.43402 -27.90789 -26.74946 -24.51243 -22.74244 -21.90693 -21.15723 -20.85351 -18.86912 -18.45927 -17.81757 -17.64154 -16.55238 -16.15157 -15.97652 -15.87162 -15.21090 -14.77712 -14.52363 -14.29916 -14.26694 -13.90995 -13.84508 -13.70162 -13.56203 -13.42884 -13.10078 -12.98382 -12.89271 -12.78797 -12.67668 -12.11281 -12.00176 -11.92044 -11.85874 -11.77199 -11.39731 -10.99396 -10.81832 -10.41973 -9.92971 -9.35874 -8.19251 -6.09713 0.54992 1.24105 1.47107 1.52923 1.62529 2.07137 2.24317 2.35928 3.07638 3.14191 3.28185 3.60133 3.94950 4.10286 4.13154 4.18937 4.33468 4.38773 4.47459 4.58279 4.60001 4.63716 4.68339 4.75602 4.83115 4.86904 4.88928 4.93275 5.00453 5.02618 5.11063 5.14859 5.22143 5.30584 5.39059 5.46623 5.49302 5.71261 6.12531 6.49616 7.17575 7.32919 7.63643 8.07805 8.79469 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013313 B = 0.006147 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.627582 B = 4554.079873 C = 5726.531174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.108 3.892 5 N -0.450 5.450 6 C -0.347 4.347 7 H 0.102 0.898 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.984 3.016 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.258 1.258 14 C 0.465 3.535 15 O -0.632 6.632 16 C -0.032 4.032 17 C -0.191 4.191 18 C 0.018 3.982 19 C -0.072 4.072 20 N -0.397 5.397 21 O 0.084 5.916 22 C -0.024 4.024 23 C -0.068 4.068 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.022 0.978 33 H 0.271 0.729 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 6.193 1.076 7.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.015 4.015 5 N -0.168 5.168 6 C -0.474 4.474 7 H 0.119 0.881 8 C -0.198 4.198 9 N -0.538 5.538 10 Si 0.807 3.193 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.181 1.181 14 C 0.255 3.745 15 O -0.520 6.520 16 C -0.072 4.072 17 C -0.195 4.195 18 C -0.141 4.141 19 C -0.129 4.129 20 N -0.106 5.106 21 O 0.022 5.978 22 C -0.087 4.087 23 C -0.125 4.125 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.654 5.875 2.551 7.374 hybrid contribution 0.211 -0.354 -1.385 1.445 sum -3.443 5.521 1.167 6.611 Atomic orbital electron populations 1.21705 0.94110 1.02274 1.01800 1.21411 0.97139 0.95474 1.01449 1.21728 0.95719 0.97424 1.00128 1.21555 0.93153 0.85038 1.01790 1.43664 1.56051 1.12234 1.04834 1.19815 1.40041 0.98236 0.89352 0.88082 1.26280 0.94241 0.95960 1.03293 1.69781 1.34411 1.14462 1.35162 0.85061 0.79265 0.77905 0.77044 1.19669 1.21293 1.18141 1.20936 0.80871 0.89360 0.83295 1.90511 1.58267 1.70238 1.32978 1.19567 1.03267 0.94046 0.90327 1.20707 0.94317 1.05184 0.99320 1.23798 0.99560 1.00468 0.90248 1.20185 0.90885 0.99910 1.01942 1.73698 0.99058 1.16500 1.21385 1.84664 1.19332 1.59621 1.34134 1.24770 0.98419 1.00624 0.84925 1.20484 0.84529 1.03003 1.04481 0.92972 0.92461 0.91229 0.92155 0.92860 0.94474 0.92669 0.87906 0.95934 0.91880 0.88207 0.86890 0.87975 0.90138 0.91405 0.89741 0.87168 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.90 5.93 30.59 0.18 -3.72 16 3 C -0.11 -4.54 5.54 30.59 0.17 -4.37 16 4 C 0.11 5.22 4.96 86.38 0.43 5.65 16 5 N -0.45 -21.92 2.52 -635.53 -1.60 -23.52 16 6 C -0.35 -16.26 8.49 84.04 0.71 -15.55 16 7 H 0.10 4.34 7.31 -2.91 -0.02 4.32 16 8 C 0.00 0.21 5.24 84.93 0.45 0.65 16 9 N -0.90 -45.70 10.93 21.66 0.24 -45.46 16 10 Si 0.98 36.89 29.56 68.60 2.03 38.91 16 11 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 12 H -0.29 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 14 C 0.47 22.03 7.61 87.66 0.67 22.70 16 15 O -0.63 -33.70 15.67 -3.06 -0.05 -33.75 16 16 C -0.03 -1.22 4.77 29.10 0.14 -1.08 16 17 C -0.19 -7.11 4.82 -19.74 -0.10 -7.20 16 18 C 0.02 0.66 7.33 43.57 0.32 0.98 16 19 C -0.07 -2.29 10.39 71.23 0.74 -1.55 16 20 N -0.40 -15.09 12.07 -49.56 -0.60 -15.69 16 21 O 0.08 2.98 11.20 71.63 0.80 3.78 16 22 C -0.02 -0.79 7.49 25.04 0.19 -0.60 16 23 C -0.07 -1.57 10.30 71.24 0.73 -0.83 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 5.29 5.26 -2.39 -0.01 5.28 16 32 H 0.02 1.16 7.48 -2.39 -0.02 1.14 16 33 H 0.27 13.06 8.32 -92.71 -0.77 12.29 16 34 H 0.10 3.78 8.03 -2.39 -0.02 3.76 16 35 H 0.11 3.70 7.14 -2.39 -0.02 3.68 16 36 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 41 H 0.10 2.10 7.43 -2.39 -0.02 2.08 16 Total: -1.00 -63.21 344.72 7.17 -56.04 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.01 Total: 27.64 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.34 Total: -7.96 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -1.96 Total: -84.67 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: 0.75 Total: -29.97 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.91 kcal Total: -63.21 7.17 -56.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142202875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.592 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds