Wall clock time and date at job start Tue Mar 31 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47125 * 2 1 4 4 C 1.52998 * 109.47361 * 295.21936 * 3 2 1 5 5 O 1.42890 * 109.47486 * 300.00174 * 4 3 2 6 6 C 1.53007 * 109.46916 * 175.22030 * 3 2 1 7 7 O 1.42898 * 109.46945 * 180.84097 * 6 3 2 8 8 N 1.46502 * 109.47272 * 55.22587 * 3 2 1 9 9 C 1.38369 * 120.00113 * 62.24857 * 8 3 2 10 10 C 1.39698 * 119.43096 * 176.65034 * 9 8 3 11 11 C 1.36560 * 119.49670 * 180.28324 * 10 9 8 12 12 C 1.41322 * 118.40655 * 359.97438 * 11 10 9 13 13 C 1.41201 * 120.57153 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00134 * 207.14108 * 13 12 11 15 15 C 1.39872 * 120.00228 * 27.13633 * 13 12 11 16 16 N 1.30904 * 119.99452 * 11.71913 * 15 13 12 17 17 Si 1.86797 * 120.00348 * 191.71298 * 15 13 12 18 18 H 1.48505 * 109.46685 * 60.00429 * 17 15 13 19 19 H 1.48497 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47333 * 300.00229 * 17 15 13 21 21 C 1.40755 * 118.86026 * 0.02562 * 12 11 10 22 22 C 1.50703 * 119.81612 * 180.02562 * 21 12 11 23 23 N 1.31484 * 120.36527 * 0.02562 * 21 12 11 24 24 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47136 * 300.00172 * 1 2 3 26 26 H 1.08999 * 109.47446 * 59.99366 * 1 2 3 27 27 H 1.08998 * 109.46899 * 240.00240 * 2 1 3 28 28 H 1.08999 * 109.47446 * 120.00634 * 2 1 3 29 29 H 1.09002 * 109.46484 * 60.00296 * 4 3 2 30 30 H 1.09000 * 109.46858 * 179.97438 * 4 3 2 31 31 H 0.96697 * 114.00269 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47274 * 300.84156 * 6 3 2 33 33 H 1.08999 * 109.46628 * 60.84403 * 6 3 2 34 34 H 0.96701 * 113.99831 * 179.97438 * 7 6 3 35 35 H 0.97001 * 120.00123 * 242.25711 * 8 3 2 36 36 H 1.08002 * 120.25606 * 0.25569 * 10 9 8 37 37 H 1.07999 * 120.80274 * 179.97438 * 11 10 9 38 38 H 0.97002 * 119.99863 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.47222 * 269.97560 * 22 21 12 40 40 H 1.09001 * 109.46853 * 29.98466 * 22 21 12 41 41 H 1.09003 * 109.46641 * 149.97769 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6305 2.1282 -1.3050 5 8 2.1962 1.4231 -2.4115 6 6 3.5653 1.4441 0.1202 7 8 4.0401 2.7918 0.1399 8 7 1.4600 2.1655 1.1345 9 6 1.7320 1.7560 2.4280 10 6 1.2306 2.4955 3.5019 11 6 1.5031 2.0958 4.7789 12 6 2.2898 0.9370 4.9674 13 6 2.5998 0.4831 6.2680 14 1 3.5015 -0.0856 6.4409 15 6 1.7391 0.7700 7.3326 16 7 0.5452 1.2526 7.0971 17 14 2.2931 0.4643 9.0901 18 1 3.5017 1.2782 9.3767 19 1 1.2050 0.8466 10.0256 20 1 2.6127 -0.9753 9.2651 21 6 2.7598 0.2437 3.8362 22 6 3.6000 -0.9950 4.0122 23 7 2.4700 0.6707 2.6269 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.5439 2.1271 -1.3905 30 1 1.9935 3.1560 -1.3047 31 1 1.9772 1.8028 -3.2734 32 1 3.8576 0.9424 1.0426 33 1 3.9973 0.9191 -0.7317 34 1 5.0010 2.8691 0.2150 35 1 0.8853 2.9313 0.9790 36 1 0.6324 3.3768 3.3236 37 1 1.1266 2.6519 5.6247 38 1 -0.0519 1.4512 7.8353 39 1 4.6530 -0.7169 4.0541 40 1 3.3192 -1.4958 4.9387 41 1 3.4351 -1.6683 3.1709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157199696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:09 Heat of formation + Delta-G solvation = -66.004377 kcal Electronic energy + Delta-G solvation = -23028.824940 eV Core-core repulsion = 19715.607045 eV Total energy + Delta-G solvation = -3313.217896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.33587 -37.88650 -35.90668 -35.11818 -33.68286 -32.28412 -30.74775 -29.85237 -28.31473 -26.78067 -25.78827 -24.13184 -22.69532 -21.25040 -20.46376 -18.87928 -17.40034 -17.14309 -16.77646 -16.14552 -15.49621 -15.14601 -14.78709 -14.14657 -14.03059 -13.75413 -13.52726 -12.95830 -12.89295 -12.75726 -12.43406 -12.12413 -11.70708 -11.58484 -11.52821 -11.35467 -11.31128 -11.09237 -10.83738 -10.83092 -10.57502 -10.46758 -10.05740 -9.82620 -9.62569 -9.47409 -9.26819 -8.56068 -8.06037 -7.84230 -6.71102 -6.49999 -4.14553 2.78328 3.01930 3.10473 3.13533 3.33428 3.86698 3.99985 4.67082 4.73494 4.77207 5.18689 5.25978 5.45785 5.70028 5.71617 5.78496 5.88048 5.88374 6.01370 6.16901 6.34874 6.39653 6.42585 6.52389 6.57876 6.67592 6.71715 6.73463 6.83918 7.00013 7.08713 7.24241 7.46788 7.50127 7.63260 7.86780 7.96932 8.05638 8.32121 8.51938 8.67334 8.91920 8.95267 9.78799 10.31527 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030401 B = 0.004623 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.814353 B = 6055.530981 C = 6147.784292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.215 3.785 4 C 0.076 3.924 5 O -0.565 6.565 6 C 0.066 3.934 7 O -0.571 6.571 8 N -0.726 5.726 9 C 0.303 3.697 10 C -0.210 4.210 11 C -0.084 4.084 12 C 0.031 3.969 13 C -0.454 4.454 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.813 5.813 17 Si 0.908 3.092 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.034 3.966 22 C -0.070 4.070 23 N -0.514 5.514 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.375 0.625 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.368 0.632 35 H 0.391 0.609 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.277 0.723 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 1.154 -11.317 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.127 3.873 4 C -0.002 4.002 5 O -0.368 6.368 6 C -0.013 4.013 7 O -0.374 6.374 8 N -0.365 5.365 9 C 0.071 3.929 10 C -0.234 4.234 11 C -0.110 4.110 12 C 0.026 3.974 13 C -0.485 4.485 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.441 5.441 17 Si 0.733 3.267 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.192 1.192 21 C -0.103 4.103 22 C -0.128 4.128 23 N -0.231 5.231 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.221 0.779 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.213 0.787 35 H 0.225 0.775 36 H 0.112 0.888 37 H 0.146 0.854 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.221 0.363 -11.514 11.584 hybrid contribution -0.177 1.014 1.122 1.523 sum 1.044 1.378 -10.392 10.534 Atomic orbital electron populations 1.21635 0.96254 1.00638 1.01108 1.21830 0.95758 0.96005 1.03223 1.19645 0.91167 0.92074 0.84399 1.22237 0.96190 0.95102 0.86664 1.86433 1.76916 1.57036 1.16452 1.22689 0.94579 0.82929 1.01079 1.86408 1.25907 1.27757 1.97366 1.43485 1.56788 1.35103 1.01143 1.17569 0.98257 0.93393 0.83728 1.20715 1.07373 1.01955 0.93370 1.21309 0.99000 0.95813 0.94917 1.18125 0.93944 0.91858 0.93441 1.19283 1.06814 1.30898 0.91548 0.90499 1.25828 0.94026 0.93266 1.01189 1.69782 1.05774 1.34665 1.33875 0.86376 0.79109 0.79695 0.81525 1.19096 1.20580 1.19162 1.20775 1.04358 0.97851 0.87356 1.20244 0.97095 0.94402 1.01016 1.66355 1.16938 1.14035 1.25749 0.93631 0.92251 0.94056 0.92159 0.88726 0.93637 0.92949 0.77908 0.90244 0.94279 0.78747 0.77544 0.88837 0.85393 0.91172 0.93597 0.91404 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.45 37.16 0.35 -1.82 16 2 C -0.13 -2.18 4.65 -26.73 -0.12 -2.30 16 3 C 0.22 3.55 0.36 -131.82 -0.05 3.50 16 4 C 0.08 1.04 5.64 37.16 0.21 1.25 16 5 O -0.56 -7.03 12.21 -35.23 -0.43 -7.46 16 6 C 0.07 1.14 5.56 37.16 0.21 1.34 16 7 O -0.57 -9.49 12.87 -35.23 -0.45 -9.94 16 8 N -0.73 -13.16 4.09 -47.67 -0.19 -13.36 16 9 C 0.30 6.67 6.87 -155.13 -1.07 5.60 16 10 C -0.21 -4.86 9.85 -39.64 -0.39 -5.25 16 11 C -0.08 -2.14 8.72 -39.02 -0.34 -2.48 16 12 C 0.03 0.82 5.57 -106.65 -0.59 0.22 16 13 C -0.45 -11.73 8.10 -37.85 -0.31 -12.03 16 14 H 0.08 1.90 6.92 -52.48 -0.36 1.54 16 15 C 0.07 1.79 5.26 -17.34 -0.09 1.69 16 16 N -0.81 -20.95 10.82 55.54 0.60 -20.35 16 17 Si 0.91 18.74 29.58 -169.99 -5.03 13.71 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 C 0.03 0.83 6.86 -81.79 -0.56 0.27 16 22 C -0.07 -1.45 9.58 36.01 0.34 -1.10 16 23 N -0.51 -11.69 5.37 -8.05 -0.04 -11.73 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.04 7.44 -51.93 -0.39 0.66 16 26 H 0.04 0.56 6.56 -51.93 -0.34 0.22 16 27 H 0.06 0.97 7.54 -51.93 -0.39 0.58 16 28 H 0.09 1.85 6.14 -51.93 -0.32 1.53 16 29 H 0.05 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.05 0.72 7.71 -51.93 -0.40 0.32 16 31 H 0.37 2.81 9.12 45.56 0.42 3.22 16 32 H 0.08 1.57 5.90 -51.93 -0.31 1.26 16 33 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 34 H 0.37 4.66 9.12 45.56 0.42 5.07 16 35 H 0.39 6.42 8.46 -40.82 -0.35 6.07 16 36 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.13 3.38 6.22 -52.49 -0.33 3.05 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.41 6.80 -51.93 -0.35 1.06 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -29.40 325.64 -7.31 -36.71 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -4.26 Total: 18.62 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.41 Total: -11.10 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.36 Total: -45.44 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.88 Total: -17.40 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.40 -7.31 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157199696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.293 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds