Wall clock time and date at job start Tue Mar 31 2020 02:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47125 * 2 1 4 4 C 1.52998 * 109.47361 * 295.21936 * 3 2 1 5 5 O 1.42890 * 109.47486 * 300.00174 * 4 3 2 6 6 C 1.53007 * 109.46916 * 175.22030 * 3 2 1 7 7 O 1.42898 * 109.46945 * 180.84097 * 6 3 2 8 8 N 1.46502 * 109.47272 * 55.22587 * 3 2 1 9 9 C 1.38369 * 120.00113 * 62.24857 * 8 3 2 10 10 C 1.39698 * 119.43096 * 176.65034 * 9 8 3 11 11 C 1.36560 * 119.49670 * 180.28324 * 10 9 8 12 12 C 1.41322 * 118.40655 * 359.97438 * 11 10 9 13 13 C 1.41201 * 120.57153 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00134 * 207.14108 * 13 12 11 15 15 C 1.39872 * 120.00228 * 27.13633 * 13 12 11 16 16 N 1.30904 * 119.99452 * 11.71913 * 15 13 12 17 17 Si 1.86797 * 120.00348 * 191.71298 * 15 13 12 18 18 H 1.48505 * 109.46685 * 60.00429 * 17 15 13 19 19 H 1.48497 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47333 * 300.00229 * 17 15 13 21 21 C 1.40755 * 118.86026 * 0.02562 * 12 11 10 22 22 C 1.50703 * 119.81612 * 180.02562 * 21 12 11 23 23 N 1.31484 * 120.36527 * 0.02562 * 21 12 11 24 24 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47136 * 300.00172 * 1 2 3 26 26 H 1.08999 * 109.47446 * 59.99366 * 1 2 3 27 27 H 1.08998 * 109.46899 * 240.00240 * 2 1 3 28 28 H 1.08999 * 109.47446 * 120.00634 * 2 1 3 29 29 H 1.09002 * 109.46484 * 60.00296 * 4 3 2 30 30 H 1.09000 * 109.46858 * 179.97438 * 4 3 2 31 31 H 0.96697 * 114.00269 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47274 * 300.84156 * 6 3 2 33 33 H 1.08999 * 109.46628 * 60.84403 * 6 3 2 34 34 H 0.96701 * 113.99831 * 179.97438 * 7 6 3 35 35 H 0.97001 * 120.00123 * 242.25711 * 8 3 2 36 36 H 1.08002 * 120.25606 * 0.25569 * 10 9 8 37 37 H 1.07999 * 120.80274 * 179.97438 * 11 10 9 38 38 H 0.97002 * 119.99863 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.47222 * 269.97560 * 22 21 12 40 40 H 1.09001 * 109.46853 * 29.98466 * 22 21 12 41 41 H 1.09003 * 109.46641 * 149.97769 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6305 2.1282 -1.3050 5 8 2.1962 1.4231 -2.4115 6 6 3.5653 1.4441 0.1202 7 8 4.0401 2.7918 0.1399 8 7 1.4600 2.1655 1.1345 9 6 1.7320 1.7560 2.4280 10 6 1.2306 2.4955 3.5019 11 6 1.5031 2.0958 4.7789 12 6 2.2898 0.9370 4.9674 13 6 2.5998 0.4831 6.2680 14 1 3.5015 -0.0856 6.4409 15 6 1.7391 0.7700 7.3326 16 7 0.5452 1.2526 7.0971 17 14 2.2931 0.4643 9.0901 18 1 3.5017 1.2782 9.3767 19 1 1.2050 0.8466 10.0256 20 1 2.6127 -0.9753 9.2651 21 6 2.7598 0.2437 3.8362 22 6 3.6000 -0.9950 4.0122 23 7 2.4700 0.6707 2.6269 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 0.5439 2.1271 -1.3905 30 1 1.9935 3.1560 -1.3047 31 1 1.9772 1.8028 -3.2734 32 1 3.8576 0.9424 1.0426 33 1 3.9973 0.9191 -0.7317 34 1 5.0010 2.8691 0.2150 35 1 0.8853 2.9313 0.9790 36 1 0.6324 3.3768 3.3236 37 1 1.1266 2.6519 5.6247 38 1 -0.0519 1.4512 7.8353 39 1 4.6530 -0.7169 4.0541 40 1 3.3192 -1.4958 4.9387 41 1 3.4351 -1.6683 3.1709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157199696.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:08 Heat of formation + Delta-G solvation = -87.589481 kcal Electronic energy + Delta-G solvation = -23029.760941 eV Core-core repulsion = 19715.607045 eV Total energy + Delta-G solvation = -3314.153896 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90137 -39.38739 -37.04751 -36.55803 -35.39851 -33.91746 -32.49491 -31.48129 -29.71065 -28.57444 -27.03441 -25.86331 -24.01594 -23.02893 -22.24466 -20.30283 -19.06668 -18.40097 -18.06659 -17.68767 -17.21655 -16.42965 -16.28444 -15.75876 -15.51986 -15.45131 -14.86678 -14.51595 -14.33807 -14.07017 -13.97644 -13.50429 -13.42299 -13.25233 -13.15836 -13.02310 -12.77107 -12.64332 -12.55350 -12.26865 -12.13326 -11.84587 -11.53098 -11.26045 -11.14997 -10.91583 -10.72661 -10.24529 -9.88582 -9.63003 -8.53875 -8.27434 -6.05091 0.95269 1.21055 1.42608 1.52636 1.61023 2.27658 2.52567 2.90874 3.41528 3.64043 3.81068 4.01876 4.04820 4.21974 4.31124 4.47776 4.60435 4.63562 4.67906 4.70050 4.73869 4.79028 4.92839 5.03619 5.06982 5.08278 5.19185 5.24120 5.26784 5.38297 5.44962 5.57743 5.66910 5.72378 6.02548 6.08887 6.52612 6.78647 6.89466 6.92806 6.96565 7.05747 7.12850 7.98590 8.48985 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030401 B = 0.004623 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.814353 B = 6055.530981 C = 6147.784292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.207 3.793 4 C 0.088 3.912 5 O -0.575 6.575 6 C 0.071 3.929 7 O -0.581 6.581 8 N -0.714 5.714 9 C 0.312 3.688 10 C -0.222 4.222 11 C -0.103 4.103 12 C -0.005 4.005 13 C -0.482 4.482 14 H 0.079 0.921 15 C 0.030 3.970 16 N -0.847 5.847 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.260 1.260 21 C 0.024 3.976 22 C -0.063 4.063 23 N -0.511 5.511 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.399 0.601 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.384 0.616 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.281 0.719 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 1.153 -12.922 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.164 4.164 3 C 0.119 3.881 4 C 0.010 3.990 5 O -0.383 6.383 6 C -0.007 4.007 7 O -0.387 6.387 8 N -0.353 5.353 9 C 0.077 3.923 10 C -0.246 4.246 11 C -0.130 4.130 12 C -0.010 4.010 13 C -0.514 4.514 14 H 0.097 0.903 15 C -0.182 4.182 16 N -0.476 5.476 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.114 4.114 22 C -0.120 4.120 23 N -0.228 5.228 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.249 0.751 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.232 0.768 35 H 0.236 0.764 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.422 0.379 -13.183 13.264 hybrid contribution -0.217 1.043 1.397 1.757 sum 1.204 1.423 -11.786 11.932 Atomic orbital electron populations 1.21576 0.95313 1.01082 1.01054 1.21744 0.96501 0.95964 1.02175 1.19829 0.90784 0.92134 0.85311 1.21990 0.97074 0.94440 0.85491 1.86373 1.77062 1.57321 1.17506 1.22542 0.95129 0.83054 1.00024 1.86363 1.27691 1.27335 1.97297 1.43494 1.56337 1.35220 1.00284 1.17838 0.96743 0.92571 0.85125 1.20926 1.07817 1.02903 0.92968 1.21277 0.99994 0.96220 0.95468 1.18460 0.95337 0.92735 0.94470 1.19500 1.07413 1.32150 0.92303 0.90309 1.26625 0.93764 0.92759 1.05008 1.69864 1.06777 1.35825 1.35110 0.85312 0.78635 0.79714 0.76381 1.18783 1.19952 1.18480 1.21305 1.04120 0.98584 0.87379 1.20213 0.97269 0.93259 1.01282 1.66562 1.17130 1.14230 1.24922 0.93078 0.94616 0.91622 0.91073 0.91813 0.91945 0.92929 0.75133 0.93089 0.93213 0.76844 0.76369 0.86826 0.87107 0.90839 0.92199 0.91873 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.45 71.98 0.68 -3.20 16 2 C -0.12 -3.98 4.65 30.59 0.14 -3.84 16 3 C 0.21 6.40 0.36 3.60 0.00 6.40 16 4 C 0.09 2.10 5.64 71.98 0.41 2.51 16 5 O -0.58 -12.16 12.21 -148.98 -1.82 -13.98 16 6 C 0.07 2.34 5.56 71.98 0.40 2.74 16 7 O -0.58 -18.18 12.87 -148.98 -1.92 -20.09 16 8 N -0.71 -24.86 4.09 -304.72 -1.25 -26.10 16 9 C 0.31 13.63 6.87 133.31 0.92 14.54 16 10 C -0.22 -10.38 9.85 22.23 0.22 -10.16 16 11 C -0.10 -5.44 8.72 22.64 0.20 -5.24 16 12 C -0.01 -0.27 5.57 -21.18 -0.12 -0.39 16 13 C -0.48 -25.60 8.10 23.39 0.19 -25.41 16 14 H 0.08 3.98 6.92 -2.91 -0.02 3.96 16 15 C 0.03 1.51 5.26 85.23 0.45 1.96 16 16 N -0.85 -44.96 10.82 21.82 0.24 -44.73 16 17 Si 0.98 38.88 29.58 68.60 2.03 40.91 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 21 C 0.02 1.18 6.86 43.23 0.30 1.47 16 22 C -0.06 -2.60 9.58 71.24 0.68 -1.91 16 23 N -0.51 -23.33 5.37 -179.37 -0.96 -24.29 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.03 1.20 7.44 -2.39 -0.02 1.18 16 26 H 0.06 1.58 6.56 -2.39 -0.02 1.57 16 27 H 0.07 2.11 7.54 -2.39 -0.02 2.09 16 28 H 0.06 2.45 6.14 -2.39 -0.01 2.43 16 29 H 0.06 1.29 6.56 -2.39 -0.02 1.27 16 30 H 0.05 1.27 7.71 -2.39 -0.02 1.25 16 31 H 0.40 4.33 9.12 -74.06 -0.68 3.66 16 32 H 0.05 1.97 5.90 -2.39 -0.01 1.96 16 33 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 34 H 0.38 9.04 9.12 -74.06 -0.68 8.37 16 35 H 0.40 12.35 8.46 -92.71 -0.78 11.56 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.11 6.15 6.22 -2.91 -0.02 6.13 16 38 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 2.65 6.80 -2.39 -0.02 2.63 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -64.07 325.64 -0.27 -64.34 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: -1.05 Total: 44.48 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 4.46 Total: -20.53 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -1.97 Total: -95.12 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -3.74 Total: -34.07 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -64.07 -0.27 -64.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157199696.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.249 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds