Wall clock time and date at job start Tue Mar 31 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47442 * 2 1 4 4 C 1.53006 * 109.46998 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.36918 * 120.00584 * 263.00608 * 5 4 3 7 7 H 1.07990 * 120.00494 * 187.38906 * 6 5 4 8 8 C 1.38810 * 119.99506 * 7.38508 * 6 5 4 9 9 N 1.31569 * 120.00015 * 28.58873 * 8 6 5 10 10 Si 1.86797 * 120.00013 * 208.58402 * 8 6 5 11 11 H 1.48500 * 109.47036 * 84.98998 * 10 8 6 12 12 H 1.48493 * 109.47372 * 204.98811 * 10 8 6 13 13 H 1.48503 * 109.47339 * 324.99212 * 10 8 6 14 14 C 1.38850 * 119.99707 * 83.00636 * 5 4 3 15 15 C 1.38890 * 119.64750 * 185.02273 * 14 5 4 16 16 C 1.39087 * 119.14142 * 179.69842 * 15 14 5 17 17 O 1.35752 * 120.77001 * 180.27157 * 16 15 14 18 18 C 1.42905 * 116.99905 * 180.27799 * 17 16 15 19 19 C 1.39220 * 118.45734 * 0.54226 * 16 15 14 20 20 C 1.38616 * 119.21759 * 359.45330 * 19 16 15 21 21 O 1.35680 * 119.60291 * 180.29965 * 20 19 16 22 22 C 1.42900 * 116.99649 * 180.02562 * 21 20 19 23 23 N 1.32361 * 120.79402 * 0.28549 * 20 19 16 24 24 H 1.08995 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46859 * 300.00148 * 1 2 3 26 26 H 1.09004 * 109.46682 * 60.00046 * 1 2 3 27 27 H 1.09000 * 109.47238 * 239.99855 * 2 1 3 28 28 H 1.09007 * 109.47129 * 120.00217 * 2 1 3 29 29 H 1.08993 * 109.47119 * 60.00103 * 3 2 1 30 30 H 1.08996 * 109.46836 * 299.99771 * 3 2 1 31 31 H 1.09000 * 109.46633 * 60.00144 * 4 3 2 32 32 H 1.08999 * 109.46849 * 300.00305 * 4 3 2 33 33 H 0.96998 * 119.99940 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.43068 * 359.97401 * 15 14 5 35 35 H 1.08999 * 109.46423 * 299.99380 * 18 17 16 36 36 H 1.08997 * 109.47433 * 60.00015 * 18 17 16 37 37 H 1.09003 * 109.46813 * 180.02562 * 18 17 16 38 38 H 1.07993 * 120.39345 * 179.73412 * 19 16 15 39 39 H 1.09001 * 109.47101 * 299.99216 * 22 21 20 40 40 H 1.08994 * 109.47829 * 59.99771 * 22 21 20 41 41 H 1.09004 * 109.46803 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.4234 3.4202 -1.1770 7 1 4.8942 4.3921 -1.1666 8 6 4.1882 2.7759 -2.3838 9 7 3.1813 1.9365 -2.4961 10 14 5.3013 3.1006 -3.8484 11 1 6.4917 2.2162 -3.7711 12 1 4.5597 2.8235 -5.1047 13 1 5.7374 4.5200 -3.8337 14 6 4.1514 3.5275 1.1932 15 6 4.5149 4.8679 1.1736 16 6 4.5986 5.5646 2.3745 17 8 4.9454 6.8769 2.3933 18 6 5.0126 7.5119 3.6717 19 6 4.3239 4.8834 3.5572 20 6 3.9672 3.5452 3.5000 21 8 3.6919 2.8753 4.6474 22 6 3.3307 1.4983 4.5239 23 7 3.8916 2.9130 2.3396 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9286 0.8908 33 1 3.0168 1.4865 -3.3395 34 1 4.7255 5.3639 0.2376 35 1 4.0368 7.4599 4.1548 36 1 5.7522 7.0046 4.2910 37 1 5.2993 8.5558 3.5442 38 1 4.3836 5.3928 4.5075 39 1 2.4330 1.4116 3.9116 40 1 4.1461 0.9495 4.0529 41 1 3.1367 1.0834 5.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:38 Heat of formation + Delta-G solvation = -27.593259 kcal Electronic energy + Delta-G solvation = -22749.274709 eV Core-core repulsion = 19437.722445 eV Total energy + Delta-G solvation = -3311.552265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.83506 -38.25081 -37.63072 -35.57696 -33.76984 -32.00366 -30.38971 -29.29852 -28.19942 -26.84561 -26.24493 -24.86721 -22.74323 -21.84828 -20.72941 -20.08311 -18.39650 -17.03774 -16.46560 -15.76245 -15.45904 -15.33417 -14.99989 -14.64484 -14.44489 -14.27153 -13.91395 -13.67334 -13.48998 -12.63798 -12.61154 -12.21041 -11.98876 -11.79298 -11.69152 -11.46045 -11.24251 -11.13336 -11.01919 -10.80534 -10.49705 -10.43587 -10.28649 -10.20601 -10.04699 -9.55016 -9.05080 -8.51930 -8.37647 -7.93161 -6.89023 -6.56522 -3.78200 2.42621 2.53522 3.11442 3.16299 3.18488 3.62204 3.95042 3.97063 4.57298 4.73742 5.10678 5.41661 5.48851 5.56927 5.67439 5.68146 5.70341 5.79546 5.80504 5.85843 6.06063 6.10016 6.28917 6.29746 6.36040 6.39850 6.55869 6.57975 6.68546 6.91021 6.93215 6.96905 7.04617 7.18127 7.29196 7.39334 7.62148 7.71492 7.96061 8.22553 8.44726 8.94533 9.17723 9.64567 10.39163 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.007200 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.143871 B = 3888.179628 C = 5725.938533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.113 4.113 4 C 0.142 3.858 5 N -0.404 5.404 6 C -0.313 4.313 7 H 0.108 0.892 8 C 0.036 3.964 9 N -0.840 5.840 10 Si 0.921 3.079 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.412 3.588 15 C -0.313 4.313 16 C 0.221 3.779 17 O -0.317 6.317 18 C 0.033 3.967 19 C -0.393 4.393 20 C 0.394 3.606 21 O -0.320 6.320 22 C 0.047 3.953 23 N -0.627 5.627 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.272 0.728 34 H 0.130 0.870 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 0.198 6.814 6.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.151 4.151 4 C 0.018 3.982 5 N -0.089 5.089 6 C -0.441 4.441 7 H 0.125 0.875 8 C -0.171 4.171 9 N -0.474 5.474 10 Si 0.747 3.253 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.170 3.830 15 C -0.340 4.340 16 C 0.169 3.831 17 O -0.229 6.229 18 C -0.063 4.063 19 C -0.421 4.421 20 C 0.209 3.791 21 O -0.227 6.227 22 C -0.049 4.049 23 N -0.366 5.366 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.780 -0.738 6.361 6.451 hybrid contribution 0.531 0.708 -0.521 1.027 sum -0.248 -0.029 5.841 5.846 Atomic orbital electron populations 1.21720 0.97023 1.00140 1.01355 1.21346 0.94694 0.98379 1.00585 1.21820 0.96139 0.95112 1.02053 1.21361 0.93974 0.82261 1.00564 1.42767 1.53501 1.10569 1.02102 1.19785 1.36680 1.05515 0.82129 0.87459 1.25236 0.95927 0.97063 0.98915 1.70245 1.22759 1.27611 1.26805 0.86016 0.80230 0.79389 0.79656 1.20102 1.20899 1.19214 1.17266 0.93750 0.86928 0.85013 1.20108 1.23087 0.94360 0.96473 1.18443 0.89908 0.81640 0.93059 1.85999 1.84001 1.21795 1.31101 1.22916 1.01368 0.97229 0.84758 1.19994 1.29743 0.94732 0.97591 1.18799 0.88568 0.87760 0.83964 1.86144 1.83109 1.25067 1.28403 1.22639 1.00786 0.80064 1.01394 1.66574 1.33355 1.39586 0.97060 0.93900 0.93523 0.92917 0.92321 0.93647 0.94503 0.88937 0.89049 0.93787 0.91785 0.85210 0.92937 0.92932 0.89146 0.86332 0.92664 0.92803 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.11 -1.99 5.93 -26.73 -0.16 -2.15 16 3 C -0.11 -2.42 5.05 -26.73 -0.13 -2.56 16 4 C 0.14 3.25 4.57 -4.04 -0.02 3.23 16 5 N -0.40 -10.00 2.74 -115.11 -0.32 -10.32 16 6 C -0.31 -7.87 9.22 -15.07 -0.14 -8.01 16 7 H 0.11 2.68 5.92 -52.49 -0.31 2.37 16 8 C 0.04 0.85 4.81 -17.45 -0.08 0.77 16 9 N -0.84 -20.19 8.88 55.49 0.49 -19.70 16 10 Si 0.92 18.96 29.64 -169.99 -5.04 13.92 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 C 0.41 10.03 7.29 -155.05 -1.13 8.90 16 15 C -0.31 -7.36 9.26 -39.03 -0.36 -7.72 16 16 C 0.22 4.70 6.73 -38.90 -0.26 4.43 16 17 O -0.32 -5.93 10.51 -18.96 -0.20 -6.13 16 18 C 0.03 0.44 9.84 101.05 0.99 1.43 16 19 C -0.39 -8.03 9.03 -39.08 -0.35 -8.39 16 20 C 0.39 8.46 7.48 -17.18 -0.13 8.33 16 21 O -0.32 -6.08 10.47 -18.74 -0.20 -6.28 16 22 C 0.05 0.73 10.38 101.05 1.05 1.78 16 23 N -0.63 -14.41 8.04 -12.57 -0.10 -14.51 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 2.22 6.44 -51.93 -0.33 1.89 16 31 H 0.09 2.20 5.83 -51.93 -0.30 1.90 16 32 H 0.04 0.99 7.53 -51.93 -0.39 0.60 16 33 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 34 H 0.13 3.07 6.02 -52.49 -0.32 2.76 16 35 H 0.05 0.66 7.71 -51.93 -0.40 0.26 16 36 H 0.05 0.66 7.71 -51.93 -0.40 0.26 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.12 2.13 6.45 -52.49 -0.34 1.79 16 39 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -26.90 334.34 -6.83 -33.73 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.15 Total: 6.09 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.36 Total: -1.83 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.08 Total: -44.53 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.40 Total: -12.41 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.04 Total: 13.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.90 -6.83 -33.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.133 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds