Wall clock time and date at job start Tue Mar 31 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47442 * 2 1 4 4 C 1.53006 * 109.46998 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46969 * 179.97438 * 4 3 2 6 6 C 1.36918 * 120.00584 * 263.00608 * 5 4 3 7 7 H 1.07990 * 120.00494 * 187.38906 * 6 5 4 8 8 C 1.38810 * 119.99506 * 7.38508 * 6 5 4 9 9 N 1.31569 * 120.00015 * 28.58873 * 8 6 5 10 10 Si 1.86797 * 120.00013 * 208.58402 * 8 6 5 11 11 H 1.48500 * 109.47036 * 84.98998 * 10 8 6 12 12 H 1.48493 * 109.47372 * 204.98811 * 10 8 6 13 13 H 1.48503 * 109.47339 * 324.99212 * 10 8 6 14 14 C 1.38850 * 119.99707 * 83.00636 * 5 4 3 15 15 C 1.38890 * 119.64750 * 185.02273 * 14 5 4 16 16 C 1.39087 * 119.14142 * 179.69842 * 15 14 5 17 17 O 1.35752 * 120.77001 * 180.27157 * 16 15 14 18 18 C 1.42905 * 116.99905 * 180.27799 * 17 16 15 19 19 C 1.39220 * 118.45734 * 0.54226 * 16 15 14 20 20 C 1.38616 * 119.21759 * 359.45330 * 19 16 15 21 21 O 1.35680 * 119.60291 * 180.29965 * 20 19 16 22 22 C 1.42900 * 116.99649 * 180.02562 * 21 20 19 23 23 N 1.32361 * 120.79402 * 0.28549 * 20 19 16 24 24 H 1.08995 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46859 * 300.00148 * 1 2 3 26 26 H 1.09004 * 109.46682 * 60.00046 * 1 2 3 27 27 H 1.09000 * 109.47238 * 239.99855 * 2 1 3 28 28 H 1.09007 * 109.47129 * 120.00217 * 2 1 3 29 29 H 1.08993 * 109.47119 * 60.00103 * 3 2 1 30 30 H 1.08996 * 109.46836 * 299.99771 * 3 2 1 31 31 H 1.09000 * 109.46633 * 60.00144 * 4 3 2 32 32 H 1.08999 * 109.46849 * 300.00305 * 4 3 2 33 33 H 0.96998 * 119.99940 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.43068 * 359.97401 * 15 14 5 35 35 H 1.08999 * 109.46423 * 299.99380 * 18 17 16 36 36 H 1.08997 * 109.47433 * 60.00015 * 18 17 16 37 37 H 1.09003 * 109.46813 * 180.02562 * 18 17 16 38 38 H 1.07993 * 120.39345 * 179.73412 * 19 16 15 39 39 H 1.09001 * 109.47101 * 299.99216 * 22 21 20 40 40 H 1.08994 * 109.47829 * 59.99771 * 22 21 20 41 41 H 1.09004 * 109.46803 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.4234 3.4202 -1.1770 7 1 4.8942 4.3921 -1.1666 8 6 4.1882 2.7759 -2.3838 9 7 3.1813 1.9365 -2.4961 10 14 5.3013 3.1006 -3.8484 11 1 6.4917 2.2162 -3.7711 12 1 4.5597 2.8235 -5.1047 13 1 5.7374 4.5200 -3.8337 14 6 4.1514 3.5275 1.1932 15 6 4.5149 4.8679 1.1736 16 6 4.5986 5.5646 2.3745 17 8 4.9454 6.8769 2.3933 18 6 5.0126 7.5119 3.6717 19 6 4.3239 4.8834 3.5572 20 6 3.9672 3.5452 3.5000 21 8 3.6919 2.8753 4.6474 22 6 3.3307 1.4983 4.5239 23 7 3.8916 2.9130 2.3396 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9330 0.9286 0.8908 33 1 3.0168 1.4865 -3.3395 34 1 4.7255 5.3639 0.2376 35 1 4.0368 7.4599 4.1548 36 1 5.7522 7.0046 4.2910 37 1 5.2993 8.5558 3.5442 38 1 4.3836 5.3928 4.5075 39 1 2.4330 1.4116 3.9116 40 1 4.1461 0.9495 4.0529 41 1 3.1367 1.0834 5.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:37 Heat of formation + Delta-G solvation = -42.595216 kcal Electronic energy + Delta-G solvation = -22749.925243 eV Core-core repulsion = 19437.722445 eV Total energy + Delta-G solvation = -3312.202798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48383 -39.73342 -39.31069 -37.22201 -35.34190 -33.79547 -32.05210 -30.92530 -29.74626 -28.09518 -27.73632 -26.59570 -24.33820 -23.52207 -22.33210 -21.73187 -20.01426 -18.80672 -18.08342 -17.37217 -17.01610 -16.92967 -16.35650 -16.31931 -16.05258 -15.77050 -15.43074 -15.34365 -15.08832 -14.19124 -14.09523 -13.81108 -13.60296 -13.33858 -13.14972 -12.87318 -12.70670 -12.57951 -12.41872 -12.38597 -12.12169 -12.00662 -11.84411 -11.78528 -11.64292 -11.27554 -10.78938 -10.27261 -10.11088 -9.59785 -8.66985 -8.36721 -5.66345 0.70087 0.82696 1.43832 1.49312 1.55231 2.09307 2.30109 2.53800 2.78088 3.00438 3.32437 3.96137 4.25218 4.32318 4.32891 4.43547 4.46164 4.46772 4.51989 4.55663 4.61235 4.62977 4.72737 4.76916 4.87630 4.91073 5.04864 5.06432 5.12225 5.25354 5.26195 5.29718 5.38051 5.42268 5.57121 5.66030 5.87548 5.89947 6.35065 6.58105 6.68660 7.15653 7.35804 7.83794 8.58548 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.007200 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.143871 B = 3888.179628 C = 5725.938533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C -0.097 4.097 4 C 0.151 3.849 5 N -0.423 5.423 6 C -0.344 4.344 7 H 0.098 0.902 8 C 0.004 3.996 9 N -0.856 5.856 10 Si 0.984 3.016 11 H -0.274 1.274 12 H -0.277 1.277 13 H -0.269 1.269 14 C 0.399 3.601 15 C -0.345 4.345 16 C 0.230 3.770 17 O -0.330 6.330 18 C 0.021 3.979 19 C -0.386 4.386 20 C 0.384 3.616 21 O -0.318 6.318 22 C 0.044 3.956 23 N -0.636 5.636 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.275 0.725 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.149 0.851 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 0.238 8.287 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.135 4.135 4 C 0.027 3.973 5 N -0.111 5.111 6 C -0.471 4.471 7 H 0.115 0.885 8 C -0.201 4.201 9 N -0.490 5.490 10 Si 0.808 3.192 11 H -0.200 1.200 12 H -0.202 1.202 13 H -0.193 1.193 14 C 0.159 3.841 15 C -0.372 4.372 16 C 0.178 3.822 17 O -0.242 6.242 18 C -0.073 4.073 19 C -0.413 4.413 20 C 0.199 3.801 21 O -0.225 6.225 22 C -0.051 4.051 23 N -0.376 5.376 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.813 -0.684 7.876 7.948 hybrid contribution 0.539 0.797 -0.760 1.226 sum -0.275 0.113 7.116 7.122 Atomic orbital electron populations 1.21665 0.95067 1.01850 1.01070 1.21291 0.96377 0.95710 1.00991 1.21620 0.95156 0.97119 0.99631 1.21269 0.94706 0.81738 0.99540 1.42892 1.54879 1.11086 1.02212 1.19879 1.38209 1.05995 0.83021 0.88450 1.25924 0.96596 0.96932 1.00656 1.70316 1.23175 1.28025 1.27451 0.85083 0.78364 0.78974 0.76820 1.20016 1.20238 1.19306 1.17547 0.93672 0.87446 0.85435 1.20145 1.25289 0.94665 0.97136 1.18457 0.88517 0.82759 0.92466 1.85997 1.83308 1.20377 1.34472 1.23348 1.02477 0.98677 0.82807 1.20318 1.28041 0.94461 0.98471 1.19163 0.88195 0.88538 0.84196 1.86154 1.82780 1.26618 1.26954 1.22897 0.99943 0.78345 1.03918 1.66589 1.33801 1.39968 0.97220 0.91154 0.93298 0.93736 0.92651 0.92391 0.96195 0.91731 0.90436 0.93981 0.91499 0.86586 0.91907 0.91775 0.85755 0.83375 0.93628 0.93504 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.91 71.98 0.71 -3.45 16 2 C -0.11 -3.72 5.93 30.59 0.18 -3.54 16 3 C -0.10 -4.27 5.05 30.60 0.15 -4.12 16 4 C 0.15 7.16 4.57 86.38 0.39 7.56 16 5 N -0.42 -21.87 2.74 -518.08 -1.42 -23.29 16 6 C -0.34 -18.05 9.22 84.04 0.78 -17.27 16 7 H 0.10 5.15 5.92 -2.92 -0.02 5.13 16 8 C 0.00 0.21 4.81 84.87 0.41 0.62 16 9 N -0.86 -42.20 8.88 21.65 0.19 -42.01 16 10 Si 0.98 39.64 29.64 68.60 2.03 41.67 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 13 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 14 C 0.40 20.10 7.29 132.98 0.97 21.07 16 15 C -0.34 -16.72 9.26 22.63 0.21 -16.51 16 16 C 0.23 9.70 6.73 22.71 0.15 9.85 16 17 O -0.33 -11.91 10.51 -90.77 -0.95 -12.86 16 18 C 0.02 0.50 9.84 113.37 1.12 1.61 16 19 C -0.39 -15.16 9.03 22.60 0.20 -14.96 16 20 C 0.38 16.13 7.48 84.70 0.63 16.77 16 21 O -0.32 -11.47 10.47 -89.98 -0.94 -12.41 16 22 C 0.04 1.29 10.38 113.37 1.18 2.46 16 23 N -0.64 -29.58 8.04 -306.49 -2.46 -32.04 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 3.22 6.44 -2.39 -0.02 3.21 16 31 H 0.08 3.87 5.83 -2.39 -0.01 3.85 16 32 H 0.04 1.96 7.53 -2.39 -0.02 1.94 16 33 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 34 H 0.12 5.82 6.02 -2.91 -0.02 5.80 16 35 H 0.06 1.38 7.71 -2.39 -0.02 1.36 16 36 H 0.06 1.39 7.71 -2.39 -0.02 1.37 16 37 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.15 4.84 6.45 -2.91 -0.02 4.82 16 39 H 0.04 1.42 8.10 -2.39 -0.02 1.41 16 40 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 41 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -59.68 334.34 4.55 -55.13 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.02 Total: 25.73 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 7.09 Total: 0.08 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -3.69 Total: -97.34 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.90 Total: -25.27 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -59.68 4.55 -55.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.534 kcal (2) G-P(sol) polarization free energy of solvation -59.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds