Wall clock time and date at job start Tue Mar 31 2020 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32988 * 120.00057 * 2 1 4 4 C 1.47102 * 120.00284 * 354.11709 * 3 2 1 5 5 O 1.21618 * 119.99610 * 352.64677 * 4 3 2 6 6 N 1.34772 * 120.00313 * 172.91743 * 4 3 2 7 7 C 1.46503 * 120.00208 * 180.02562 * 6 4 3 8 8 H 1.08999 * 110.63864 * 36.68555 * 7 6 4 9 9 C 1.54320 * 110.72012 * 273.55037 * 7 6 4 10 10 N 1.47024 * 107.27033 * 219.44272 * 9 7 6 11 11 C 1.36943 * 125.64554 * 178.97445 * 10 9 7 12 12 H 1.07989 * 120.00262 * 348.00427 * 11 10 9 13 13 C 1.38815 * 119.99257 * 168.00589 * 11 10 9 14 14 N 1.31615 * 120.00700 * 359.38843 * 13 11 10 15 15 Si 1.86803 * 119.99444 * 179.38754 * 13 11 10 16 16 H 1.48504 * 109.46895 * 94.95552 * 15 13 11 17 17 H 1.48495 * 109.47118 * 214.95157 * 15 13 11 18 18 H 1.48496 * 109.47413 * 334.95755 * 15 13 11 19 19 C 1.47426 * 108.70349 * 358.93950 * 10 9 7 20 20 C 1.54908 * 104.83050 * 24.12865 * 19 10 9 21 21 H 1.08998 * 111.00571 * 81.06612 * 20 19 10 22 22 O 1.42902 * 111.00217 * 204.91755 * 20 19 10 23 23 C 1.50700 * 119.99862 * 180.02562 * 2 1 3 24 24 C 1.52998 * 117.50141 * 15.95452 * 23 2 1 25 25 C 1.53002 * 117.49560 * 307.29526 * 23 2 1 26 26 H 1.09003 * 109.46888 * 61.40669 * 1 2 3 27 27 H 1.08998 * 109.47233 * 181.40715 * 1 2 3 28 28 H 1.08997 * 109.47232 * 301.41404 * 1 2 3 29 29 H 1.08004 * 120.00245 * 174.11760 * 3 2 1 30 30 H 0.97001 * 119.99868 * 0.02562 * 6 4 3 31 31 H 1.09004 * 109.88224 * 338.85999 * 9 7 6 32 32 H 1.09000 * 109.88712 * 99.87251 * 9 7 6 33 33 H 0.96998 * 120.00521 * 180.02562 * 14 13 11 34 34 H 1.09000 * 110.36715 * 142.96723 * 19 10 9 35 35 H 1.08996 * 110.36545 * 265.28922 * 19 10 9 36 36 H 0.96697 * 113.99995 * 292.19682 * 22 20 19 37 37 H 1.08998 * 115.54763 * 161.62762 * 23 2 1 38 38 H 1.09005 * 117.49913 * 359.97438 * 24 23 2 39 39 H 1.09000 * 117.50189 * 145.02041 * 24 23 2 40 40 H 1.09007 * 117.49621 * 214.97860 * 25 23 2 41 41 H 1.09000 * 117.49984 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4424 2.4223 -0.1306 5 8 0.2504 2.4170 -0.3722 6 7 2.0958 3.5924 0.0121 7 6 1.3690 4.8578 -0.1174 8 1 0.3678 4.7708 0.3047 9 6 1.3023 5.3005 -1.5942 10 7 1.4902 6.7584 -1.6218 11 6 1.5172 7.5385 -2.7470 12 1 1.5894 7.0784 -3.7214 13 6 1.4520 8.9205 -2.6351 14 7 1.3520 9.4808 -1.4483 15 14 1.5062 9.9853 -4.1689 16 1 0.1212 10.3083 -4.5964 17 1 2.2388 11.2427 -3.8731 18 1 2.2015 9.2515 -5.2567 19 6 1.6437 7.2416 -0.2374 20 6 2.1546 6.0136 0.5567 21 1 3.2289 5.8836 0.4267 22 8 1.8177 6.1227 1.9412 23 6 2.2605 -1.3051 -0.0006 24 6 1.4837 -2.5692 -0.3742 25 6 1.9015 -2.3285 1.0786 26 1 -0.3633 0.4918 -0.9024 27 1 -0.3633 -1.0273 0.0252 28 1 -0.3633 0.5356 0.8770 29 1 3.2478 1.1542 0.0959 30 1 3.0473 3.5967 0.2006 31 1 2.0944 4.8138 -2.1632 32 1 0.3308 5.0416 -2.0153 33 1 1.3061 10.4465 -1.3701 34 1 2.3735 8.0502 -0.1966 35 1 0.6839 7.5756 0.1564 36 1 2.2841 6.8317 2.4047 37 1 3.3038 -1.2454 -0.3105 38 1 0.4275 -2.4569 -0.6192 39 1 2.0160 -3.3414 -0.9296 40 1 2.7086 -2.9425 1.4784 41 1 1.1207 -2.0576 1.7893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191410118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:37 Heat of formation + Delta-G solvation = -14.866690 kcal Electronic energy + Delta-G solvation = -21816.946624 eV Core-core repulsion = 18505.946225 eV Total energy + Delta-G solvation = -3311.000399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82562 -38.40630 -37.56881 -35.07612 -34.03376 -33.15915 -31.70266 -28.72786 -27.71015 -26.81627 -24.72386 -23.72310 -22.68472 -20.88213 -20.53317 -19.87794 -18.54485 -17.17370 -17.04002 -16.51639 -16.26977 -15.41037 -14.88937 -14.67582 -14.51040 -13.93585 -13.67730 -13.31663 -13.02956 -12.97799 -12.74851 -12.25814 -12.12721 -11.95580 -11.70379 -11.49888 -11.43131 -11.19109 -11.15500 -10.95241 -10.84075 -10.74831 -10.16043 -9.92251 -9.80234 -9.55084 -9.23261 -9.01359 -8.66835 -8.59633 -6.85928 -5.78654 -3.15247 1.33085 3.37263 3.39074 3.43069 3.44286 3.47031 3.70434 4.34485 4.42698 4.55333 4.61716 4.65296 4.76550 4.96801 5.18346 5.28834 5.32522 5.41924 5.49132 5.60730 5.62805 5.68542 5.76861 5.78834 5.85428 5.88360 6.04329 6.12440 6.21651 6.43526 6.45864 6.58574 6.73701 6.99387 7.31040 7.48824 7.70158 7.83739 8.09204 8.21149 8.53763 9.13430 9.74032 10.39817 11.32963 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031005 B = 0.003361 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.876919 B = 8328.408232 C = 8876.355832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.007 4.007 3 C -0.223 4.223 4 C 0.545 3.455 5 O -0.541 6.541 6 N -0.712 5.712 7 C 0.144 3.856 8 H 0.099 0.901 9 C 0.130 3.870 10 N -0.600 5.600 11 C -0.229 4.229 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.921 5.921 15 Si 0.915 3.085 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.150 3.850 20 C 0.065 3.935 21 H 0.061 0.939 22 O -0.565 6.565 23 C -0.131 4.131 24 C -0.173 4.173 25 C -0.168 4.168 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.397 0.603 31 H 0.029 0.971 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.377 0.623 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -19.317 6.318 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.009 4.009 3 C -0.244 4.244 4 C 0.334 3.666 5 O -0.421 6.421 6 N -0.362 5.362 7 C 0.040 3.960 8 H 0.117 0.883 9 C 0.003 3.997 10 N -0.328 5.328 11 C -0.357 4.357 12 H 0.096 0.904 13 C -0.203 4.203 14 N -0.568 5.568 15 Si 0.745 3.255 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.024 3.976 20 C 0.005 3.995 21 H 0.079 0.921 22 O -0.369 6.369 23 C -0.149 4.149 24 C -0.209 4.209 25 C -0.205 4.205 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.142 0.858 30 H 0.231 0.769 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.223 0.777 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.426 -19.583 5.944 20.750 hybrid contribution 1.025 1.185 -0.572 1.667 sum 4.451 -18.398 5.372 19.676 Atomic orbital electron populations 1.21107 0.90764 1.01054 1.04841 1.21733 0.96168 0.92230 0.90759 1.22312 1.00134 0.91994 1.09933 1.18467 0.87058 0.84137 0.76954 1.90769 1.15122 1.87559 1.48647 1.45895 1.12420 1.05589 1.72306 1.21948 0.96741 0.81008 0.96348 0.88298 1.21642 0.98843 0.86686 0.92521 1.44266 1.85155 1.00668 1.02691 1.19065 1.43636 0.87786 0.85216 0.90375 1.24894 1.01577 0.96703 0.97109 1.69891 1.56299 1.09707 1.20918 0.86057 0.77641 0.79915 0.81895 1.21469 1.21638 1.20524 1.22073 1.00143 0.92192 0.83230 1.23638 0.96949 0.97685 0.81267 0.92132 1.86427 1.70804 1.57722 1.21997 1.21282 0.99576 0.88384 1.05671 1.23102 1.01417 0.98269 0.98151 1.22993 1.03841 1.01502 0.92128 0.88805 0.92878 0.90515 0.85785 0.76892 0.95328 0.94804 0.93573 0.90003 0.94544 0.77662 0.86742 0.87864 0.88303 0.88302 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.07 36.01 0.29 -1.17 16 2 C -0.01 -0.08 5.83 -101.17 -0.59 -0.67 16 3 C -0.22 -2.74 9.67 -37.81 -0.37 -3.10 16 4 C 0.54 8.75 7.68 -12.67 -0.10 8.66 16 5 O -0.54 -10.41 12.97 5.26 0.07 -10.34 16 6 N -0.71 -11.25 5.13 -53.21 -0.27 -11.52 16 7 C 0.14 2.80 2.97 -66.10 -0.20 2.61 16 8 H 0.10 2.14 7.70 -51.93 -0.40 1.74 16 9 C 0.13 2.91 6.99 -3.06 -0.02 2.89 16 10 N -0.60 -15.57 3.39 -170.07 -0.58 -16.15 16 11 C -0.23 -6.43 10.25 -15.06 -0.15 -6.58 16 12 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 13 C -0.01 -0.18 5.47 -17.43 -0.10 -0.27 16 14 N -0.92 -26.72 10.49 55.49 0.58 -26.14 16 15 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.15 3.59 5.19 -2.53 -0.01 3.58 16 20 C 0.07 1.23 4.04 -24.58 -0.10 1.13 16 21 H 0.06 1.04 8.00 -51.93 -0.42 0.63 16 22 O -0.56 -9.78 13.47 -35.23 -0.47 -10.25 16 23 C -0.13 -1.12 6.00 -91.77 -0.55 -1.67 16 24 C -0.17 -1.25 9.80 -26.69 -0.26 -1.51 16 25 C -0.17 -1.20 10.07 -26.69 -0.27 -1.47 16 26 H 0.09 1.33 6.78 -51.93 -0.35 0.98 16 27 H 0.05 0.50 5.68 -51.93 -0.30 0.21 16 28 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 30 H 0.40 5.12 8.50 -40.82 -0.35 4.78 16 31 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.08 2.12 6.76 -51.93 -0.35 1.77 16 35 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.38 4.91 9.12 45.56 0.42 5.32 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.76 6.24 -51.93 -0.32 0.43 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -32.82 335.85 -8.45 -41.27 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.39 Total: 8.67 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.42 Total: 2.40 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.27 Total: -53.80 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.41 Total: -20.59 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.82 -8.45 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191410118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.403 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds