Wall clock time and date at job start Tue Mar 31 2020 01:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32875 * 1 3 3 C 1.47111 * 119.99925 * 2 1 4 4 C 1.50704 * 120.00323 * 0.02562 * 3 2 1 5 5 C 1.32875 * 119.99925 * 180.02562 * 3 2 1 6 6 C 1.50698 * 120.00230 * 185.78388 * 5 3 2 7 7 C 1.50698 * 109.47268 * 125.67756 * 6 5 3 8 8 O 1.21283 * 119.99682 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00115 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00299 * 180.02562 * 9 7 6 11 11 H 1.09003 * 110.64229 * 34.29997 * 10 9 7 12 12 C 1.54330 * 110.71996 * 271.16080 * 10 9 7 13 13 N 1.47020 * 107.26667 * 219.44030 * 12 10 9 14 14 C 1.36941 * 125.64673 * 178.97536 * 13 12 10 15 15 H 1.08003 * 119.99483 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00076 * 180.02562 * 14 13 12 17 17 N 1.31610 * 120.00237 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47477 * 89.99386 * 18 16 14 20 20 H 1.48501 * 109.47262 * 209.99762 * 18 16 14 21 21 H 1.48501 * 109.47019 * 329.99608 * 18 16 14 22 22 C 1.47421 * 108.70811 * 358.94189 * 13 12 10 23 23 C 1.55120 * 104.94372 * 23.99738 * 22 13 12 24 24 H 1.09002 * 110.93073 * 81.21591 * 23 22 13 25 25 O 1.42901 * 111.16558 * 205.13069 * 23 22 13 26 26 H 1.08001 * 119.99978 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00163 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.99641 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46769 * 215.13546 * 4 3 2 30 30 H 1.08997 * 109.47324 * 95.13274 * 4 3 2 31 31 H 1.09000 * 109.46730 * 335.12685 * 4 3 2 32 32 H 1.07999 * 119.99458 * 5.79083 * 5 3 2 33 33 H 1.08997 * 109.47143 * 245.68173 * 6 5 3 34 34 H 1.09002 * 109.47058 * 5.67411 * 6 5 3 35 35 H 0.97003 * 120.00068 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.87788 * 338.85384 * 12 10 9 37 37 H 1.08995 * 109.88089 * 99.86963 * 12 10 9 38 38 H 0.96999 * 120.00364 * 180.02562 * 17 16 14 39 39 H 1.08997 * 110.37200 * 142.96985 * 22 13 12 40 40 H 1.09000 * 110.36371 * 265.18083 * 22 13 12 41 41 H 0.96692 * 114.00218 * 292.17344 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3930 1.2740 -0.0005 6 6 4.1466 2.5724 0.1310 7 6 5.1159 2.4764 1.2809 8 8 5.1873 1.4545 1.9301 9 7 5.9033 3.5262 1.5880 10 6 6.8459 3.4328 2.7055 11 1 7.2418 2.4208 2.7907 12 6 6.1740 3.8690 4.0245 13 7 7.1660 4.6437 4.7843 14 6 6.9576 5.2280 6.0051 15 1 5.9964 5.1385 6.4894 16 6 7.9812 5.9362 6.6195 17 7 9.1523 6.0456 6.0290 18 14 7.6970 6.7326 8.2852 19 1 8.0518 5.7718 9.3604 20 1 8.5455 7.9454 8.4052 21 1 6.2676 7.1139 8.4140 22 6 8.4227 4.6865 4.0147 23 6 7.9968 4.4602 2.5404 24 1 7.6332 5.3856 2.0936 25 8 9.0687 3.9096 1.7723 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8687 -0.9353 -0.0004 29 1 1.8568 3.3141 -0.5909 30 1 1.2092 2.9396 1.0242 31 1 0.3216 2.4278 -0.4313 32 1 3.9329 0.3435 -0.0953 33 1 4.6944 2.7695 -0.7905 34 1 3.4428 3.3839 0.3158 35 1 5.8459 4.3437 1.0690 36 1 5.3043 4.4899 3.8097 37 1 5.8707 2.9907 4.5942 38 1 9.8678 6.5401 6.4585 39 1 8.9034 5.6583 4.1268 40 1 9.0942 3.8922 4.3404 41 1 9.8111 4.5154 1.6425 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195400366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:45 Heat of formation + Delta-G solvation = -49.911097 kcal Electronic energy + Delta-G solvation = -21653.466083 eV Core-core repulsion = 18340.946044 eV Total energy + Delta-G solvation = -3312.520039 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.07972 -39.46240 -37.75531 -36.69902 -35.55078 -33.78448 -33.24162 -30.51810 -29.60792 -28.66145 -27.41720 -26.19472 -22.86548 -22.35501 -21.63646 -21.02760 -19.11554 -18.77275 -18.49410 -17.99209 -17.31562 -16.98915 -16.57091 -15.92313 -15.64690 -15.44129 -14.95695 -14.83044 -14.65094 -14.19035 -14.01438 -13.88657 -13.65437 -13.27833 -13.19699 -13.12725 -12.82751 -12.73610 -12.49364 -12.28455 -12.06233 -11.94089 -11.73359 -11.43975 -11.38708 -11.17337 -10.82307 -10.75828 -10.16662 -9.10261 -8.99032 -7.83324 -5.29949 0.43944 1.46854 1.48972 1.57608 1.65047 1.99498 2.31449 2.47421 3.07507 3.28259 3.62136 3.73300 3.78967 3.92429 4.02812 4.07345 4.19812 4.35904 4.41479 4.45568 4.47623 4.60426 4.61227 4.80684 4.82835 4.90913 4.96482 5.01574 5.15734 5.36222 5.42571 5.47031 5.49349 5.61005 5.66646 5.80426 6.06011 6.19850 6.57458 6.86641 7.03523 7.28293 7.67437 8.29773 9.18433 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.003467 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.012118 B = 8074.518413 C = 8927.202132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.145 4.145 3 C -0.109 4.109 4 C -0.126 4.126 5 C -0.142 4.142 6 C -0.102 4.102 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.703 5.703 10 C 0.155 3.845 11 H 0.071 0.929 12 C 0.132 3.868 13 N -0.619 5.619 14 C -0.246 4.246 15 H 0.081 0.919 16 C -0.061 4.061 17 N -0.947 5.947 18 Si 0.984 3.016 19 H -0.290 1.290 20 H -0.288 1.288 21 H -0.268 1.268 22 C 0.133 3.867 23 C 0.093 3.907 24 H 0.091 0.909 25 O -0.568 6.568 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.418 0.582 36 H 0.043 0.957 37 H 0.010 0.990 38 H 0.251 0.749 39 H 0.092 0.908 40 H -0.012 1.012 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 -2.800 -17.047 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.109 4.109 4 C -0.182 4.182 5 C -0.161 4.161 6 C -0.141 4.141 7 C 0.300 3.700 8 O -0.468 6.468 9 N -0.356 5.356 10 C 0.048 3.952 11 H 0.089 0.911 12 C 0.005 3.995 13 N -0.347 5.347 14 C -0.374 4.374 15 H 0.098 0.902 16 C -0.254 4.254 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.217 1.217 20 H -0.214 1.214 21 H -0.193 1.193 22 C 0.007 3.993 23 C 0.032 3.968 24 H 0.109 0.891 25 O -0.376 6.376 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.256 0.744 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.006 0.994 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -12.856 -3.910 -16.477 21.261 hybrid contribution 0.766 0.664 1.180 1.556 sum -12.090 -3.246 -15.297 19.766 Atomic orbital electron populations 1.24651 0.95173 1.03233 0.97986 1.21997 0.96122 0.96105 1.02049 1.20839 0.93845 0.95508 1.00715 1.20984 1.00858 0.93707 1.02661 1.22761 0.94368 0.97768 1.01177 1.20794 0.97516 0.98719 0.97036 1.21373 0.80807 0.82266 0.85529 1.90697 1.69561 1.31949 1.54550 1.45800 1.39188 1.17696 1.32872 1.21498 0.88479 0.99253 0.85967 0.91066 1.21671 0.92920 0.93716 0.91186 1.44549 1.09805 1.60677 1.19637 1.19454 0.98117 1.25596 0.94266 0.90158 1.25642 0.95498 1.01544 1.02690 1.69953 1.03451 1.46818 1.39349 0.85000 0.77732 0.77348 0.78741 1.21702 1.21371 1.19283 1.22415 0.88019 1.01304 0.87596 1.23273 0.87048 0.94738 0.91733 0.89127 1.86386 1.31356 1.46074 1.73752 0.86899 0.86851 0.87326 0.89547 0.91568 0.90244 0.88199 0.84872 0.85520 0.74435 0.93928 0.97214 0.93929 0.89035 0.99386 0.75231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 14.12 66.64 0.94 -1.63 16 2 C -0.14 -2.75 9.83 23.42 0.23 -2.52 16 3 C -0.11 -2.14 5.98 -18.71 -0.11 -2.25 16 4 C -0.13 -1.78 8.54 71.24 0.61 -1.17 16 5 C -0.14 -3.13 8.45 24.51 0.21 -2.92 16 6 C -0.10 -1.88 5.77 29.10 0.17 -1.71 16 7 C 0.51 14.97 7.82 87.66 0.69 15.66 16 8 O -0.59 -23.46 15.72 -3.04 -0.05 -23.51 16 9 N -0.70 -19.72 5.12 -436.93 -2.24 -21.96 16 10 C 0.15 5.85 3.00 46.18 0.14 5.99 16 11 H 0.07 3.14 7.62 -2.39 -0.02 3.12 16 12 C 0.13 5.86 7.00 86.73 0.61 6.47 16 13 N -0.62 -32.39 3.40 -691.58 -2.35 -34.74 16 14 C -0.25 -13.86 10.27 84.03 0.86 -13.00 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 17 N -0.95 -54.88 10.09 21.65 0.22 -54.67 16 18 Si 0.98 45.04 29.55 68.60 2.03 47.07 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.13 6.45 5.63 86.93 0.49 6.94 16 23 C 0.09 3.36 4.06 32.06 0.13 3.49 16 24 H 0.09 2.82 8.00 -2.39 -0.02 2.80 16 25 O -0.57 -18.52 13.48 -148.98 -2.01 -20.52 16 26 H 0.11 1.39 6.05 -2.91 -0.02 1.37 16 27 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 28 H 0.11 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.09 0.91 6.71 -2.39 -0.02 0.89 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.91 6.18 -2.39 -0.01 0.89 16 32 H 0.10 2.50 8.05 -2.91 -0.02 2.48 16 33 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.13 1.73 5.79 -2.39 -0.01 1.72 16 35 H 0.42 8.39 8.54 -92.71 -0.79 7.60 16 36 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.09 4.85 5.87 -2.39 -0.01 4.83 16 40 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.40 9.44 9.12 -74.06 -0.68 8.77 16 Total: -1.00 -74.66 339.44 0.61 -74.06 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -0.42 Total: 23.88 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.42 Total: 10.39 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.37 Total: -111.36 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.06 Total: -44.03 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.66 0.61 -74.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195400366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.145 kcal (2) G-P(sol) polarization free energy of solvation -74.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds