Wall clock time and date at job start Tue Mar 31 2020 01:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53011 * 109.46806 * 2 1 4 4 C 1.53003 * 109.46806 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46633 * 179.97438 * 4 3 2 6 6 C 1.36966 * 120.00136 * 264.48049 * 5 4 3 7 7 H 1.07998 * 120.00391 * 131.19946 * 6 5 4 8 8 C 1.38985 * 120.00022 * 311.19693 * 6 5 4 9 9 N 1.31411 * 120.00065 * 170.54460 * 8 6 5 10 10 Si 1.86799 * 120.00047 * 350.54042 * 8 6 5 11 11 H 1.48503 * 109.46883 * 91.71168 * 10 8 6 12 12 H 1.48493 * 109.47316 * 211.71593 * 10 8 6 13 13 H 1.48496 * 109.47065 * 331.71936 * 10 8 6 14 14 C 1.34783 * 120.00020 * 84.48462 * 5 4 3 15 15 O 1.21633 * 119.99591 * 3.17528 * 14 5 4 16 16 C 1.47316 * 119.99894 * 183.17372 * 14 5 4 17 17 C 1.47128 * 128.57373 * 353.10519 * 16 14 5 18 18 N 1.30004 * 105.33223 * 180.25931 * 17 16 14 19 19 O 1.20658 * 112.32331 * 359.97438 * 18 17 16 20 20 C 1.33519 * 113.15994 * 0.02562 * 19 18 17 21 21 C 1.50696 * 126.83627 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47037 * 300.03829 * 21 20 19 23 23 C 1.53001 * 109.47163 * 60.03776 * 21 20 19 24 24 H 1.09001 * 109.47003 * 300.00040 * 1 2 3 25 25 H 1.08999 * 109.47297 * 60.00152 * 1 2 3 26 26 H 1.08999 * 109.46556 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47284 * 240.00188 * 2 1 3 28 28 H 1.08999 * 109.47297 * 119.99848 * 2 1 3 29 29 H 1.08998 * 109.46650 * 60.00299 * 3 2 1 30 30 H 1.08999 * 109.47068 * 299.99988 * 3 2 1 31 31 H 1.09001 * 109.47003 * 59.99960 * 4 3 2 32 32 H 1.08999 * 109.47297 * 299.99848 * 4 3 2 33 33 H 0.96997 * 119.99909 * 180.02562 * 9 8 6 34 34 H 1.08003 * 127.33095 * 0.25828 * 17 16 14 35 35 H 1.08998 * 109.47034 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.47353 * 59.99881 * 22 21 20 37 37 H 1.08999 * 109.47195 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47222 * 300.00169 * 22 21 20 39 39 H 1.09008 * 109.46835 * 179.97438 * 23 21 20 40 40 H 1.08998 * 109.46932 * 299.99938 * 23 21 20 41 41 H 1.09000 * 109.47133 * 60.00118 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.3945 3.4308 -1.1808 7 1 4.0165 4.4166 -1.4082 8 6 5.2224 2.7782 -2.0866 9 7 5.3962 3.2721 -3.2919 10 14 6.0880 1.1989 -1.5906 11 1 5.2431 0.0346 -1.9592 12 1 7.3921 1.1070 -2.2949 13 1 6.3168 1.1996 -0.1234 14 6 4.1765 3.4973 1.1615 15 8 3.9332 2.9402 2.2150 16 6 4.6005 4.9081 1.1550 17 6 5.0705 5.7196 0.0213 18 7 5.3278 6.8919 0.5209 19 8 5.1089 6.9429 1.7063 20 6 4.6601 5.7897 2.2076 21 6 4.2923 5.5103 3.6421 22 6 5.5134 5.7385 4.5353 23 6 3.1637 6.4498 4.0715 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9287 -0.8891 32 1 3.9330 0.9290 0.8909 33 1 5.9737 2.8164 -3.9241 34 1 5.1787 5.4077 -1.0071 35 1 3.9603 4.4765 3.7373 36 1 5.8453 6.7723 4.4400 37 1 5.2476 5.5360 5.5728 38 1 6.3176 5.0692 4.2294 39 1 2.8974 6.2473 5.1090 40 1 3.4955 7.4836 3.9762 41 1 2.2938 6.2872 3.4351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199747737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:50 Heat of formation + Delta-G solvation = -0.789378 kcal Electronic energy + Delta-G solvation = -22942.423110 eV Core-core repulsion = 19632.033149 eV Total energy + Delta-G solvation = -3310.389961 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.78565 -40.73798 -37.55582 -36.63585 -35.80152 -34.42574 -33.89394 -31.77769 -30.12235 -28.03989 -27.17648 -25.86969 -24.75592 -23.67555 -22.15903 -21.68639 -20.97091 -19.12514 -18.61762 -18.18239 -17.49818 -17.06321 -16.37528 -16.25989 -15.89731 -15.73966 -14.91411 -14.78577 -14.56363 -14.35038 -14.27521 -14.08218 -13.90523 -13.37280 -13.10707 -13.01909 -12.92445 -12.66736 -12.33488 -12.20304 -12.16085 -12.07778 -11.86630 -11.84634 -11.70901 -11.42776 -11.17342 -11.13915 -10.68236 -10.34705 -9.63621 -8.53020 -6.32406 0.20119 0.93714 1.17783 1.30411 1.38462 1.97441 2.13628 2.31769 2.52532 2.86596 3.50551 3.58724 3.87117 3.91367 4.00612 4.05224 4.16051 4.23452 4.29232 4.37885 4.44538 4.54848 4.73351 4.75775 4.81406 4.89535 4.94105 4.94314 4.98039 5.05594 5.13777 5.15394 5.23336 5.34618 5.35415 5.39757 5.43441 5.51392 5.99689 6.15030 6.86959 7.25142 7.34209 7.65236 8.57016 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.007152 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.860801 B = 3913.817697 C = 5124.864790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.117 4.117 4 C 0.098 3.902 5 N -0.466 5.466 6 C -0.347 4.347 7 H 0.092 0.908 8 C 0.038 3.962 9 N -0.895 5.895 10 Si 0.924 3.076 11 H -0.251 1.251 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.559 3.441 15 O -0.598 6.598 16 C -0.256 4.256 17 C 0.032 3.968 18 N -0.390 5.390 19 O 0.092 5.908 20 C 0.039 3.961 21 C -0.024 4.024 22 C -0.140 4.140 23 C -0.140 4.140 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.282 0.718 34 H 0.211 0.789 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -0.810 10.784 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.155 4.155 4 C -0.024 4.024 5 N -0.185 5.185 6 C -0.475 4.475 7 H 0.109 0.891 8 C -0.167 4.167 9 N -0.531 5.531 10 Si 0.750 3.250 11 H -0.176 1.176 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.350 3.650 15 O -0.485 6.485 16 C -0.263 4.263 17 C -0.148 4.148 18 N -0.098 5.098 19 O 0.034 5.966 20 C -0.027 4.027 21 C -0.044 4.044 22 C -0.197 4.197 23 C -0.197 4.197 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.228 0.772 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.978 0.041 10.571 11.295 hybrid contribution 0.449 -1.372 -0.782 1.642 sum -3.528 -1.331 9.789 10.490 Atomic orbital electron populations 1.21714 0.94267 1.02415 1.01805 1.21478 0.97237 0.94786 1.02300 1.21776 0.93860 0.98460 1.01452 1.21816 0.95866 0.83725 1.00949 1.43568 1.57197 1.12433 1.05348 1.19104 1.29784 1.04452 0.94118 0.89085 1.25922 0.95641 1.00476 0.94688 1.69709 1.36956 1.41368 1.05037 0.86134 0.78750 0.81170 0.78968 1.17610 1.21143 1.19613 1.17255 0.79214 0.84974 0.83566 1.90568 1.56738 1.69954 1.31191 1.22088 1.13426 0.97201 0.93566 1.27467 0.97176 0.87398 1.02807 1.73616 1.21402 1.22611 0.92121 1.84437 1.61638 1.33137 1.17363 1.25301 0.94899 0.84334 0.98118 1.20267 0.98536 1.03151 0.82406 1.21834 0.95373 1.02524 0.99972 1.21845 0.96015 0.98931 1.02907 0.92734 0.92922 0.91031 0.91815 0.91376 0.92788 0.92553 0.91640 0.91490 0.90817 0.77225 0.87462 0.91083 0.88626 0.93694 0.88640 0.91102 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.12 -3.38 5.93 30.60 0.18 -3.19 16 3 C -0.12 -4.22 5.50 30.60 0.17 -4.05 16 4 C 0.10 4.13 3.84 86.38 0.33 4.46 16 5 N -0.47 -22.04 2.04 -639.35 -1.30 -23.34 16 6 C -0.35 -17.54 7.28 84.07 0.61 -16.93 16 7 H 0.09 4.89 5.64 -2.91 -0.02 4.88 16 8 C 0.04 1.95 5.41 84.93 0.46 2.40 16 9 N -0.89 -47.73 13.96 21.67 0.30 -47.42 16 10 Si 0.92 41.02 24.88 68.60 1.71 42.72 16 11 H -0.25 -10.26 6.76 99.48 0.67 -9.58 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.27 -12.49 7.09 99.48 0.71 -11.78 16 14 C 0.56 26.26 7.59 86.63 0.66 26.92 16 15 O -0.60 -28.26 14.54 -4.13 -0.06 -28.32 16 16 C -0.26 -11.20 6.27 -18.75 -0.12 -11.32 16 17 C 0.03 1.43 10.51 87.30 0.92 2.35 16 18 N -0.39 -16.10 12.01 -54.15 -0.65 -16.75 16 19 O 0.09 3.40 11.06 76.75 0.85 4.25 16 20 C 0.04 1.42 6.06 25.49 0.15 1.57 16 21 C -0.02 -0.69 3.28 -11.54 -0.04 -0.73 16 22 C -0.14 -3.16 9.18 71.98 0.66 -2.50 16 23 C -0.14 -3.08 9.18 71.98 0.66 -2.42 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.76 4.10 -2.39 -0.01 2.75 16 32 H 0.07 2.79 7.55 -2.39 -0.02 2.77 16 33 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.21 10.09 5.28 -2.91 -0.02 10.07 16 35 H 0.11 3.55 5.93 -2.39 -0.01 3.54 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -58.33 332.05 7.20 -51.13 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.99 Total: 23.81 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.36 Total: -6.08 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -1.65 Total: -87.51 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.79 Total: -24.07 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.71 Total: 42.72 kcal Total: -58.33 7.20 -51.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199747737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.344 kcal (2) G-P(sol) polarization free energy of solvation -58.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds