Wall clock time and date at job start Tue Mar 31 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32996 * 120.00098 * 2 1 4 4 C 1.47108 * 119.99630 * 4.29371 * 3 2 1 5 5 O 1.21612 * 119.99738 * 354.11299 * 4 3 2 6 6 N 1.34780 * 119.99782 * 174.12120 * 4 3 2 7 7 C 1.46501 * 119.99776 * 179.97438 * 6 4 3 8 8 H 1.09006 * 110.77969 * 36.78315 * 7 6 4 9 9 C 1.54321 * 110.72112 * 273.54417 * 7 6 4 10 10 N 1.47023 * 107.27244 * 263.83165 * 9 7 6 11 11 C 1.36939 * 125.64960 * 181.02277 * 10 9 7 12 12 H 1.08001 * 119.99741 * 0.27517 * 11 10 9 13 13 C 1.38802 * 119.99867 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00095 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46998 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47183 * 119.99902 * 15 13 11 18 18 H 1.48494 * 109.47318 * 240.00030 * 15 13 11 19 19 C 1.47424 * 108.70129 * 1.28452 * 10 9 7 20 20 C 1.55135 * 104.72298 * 335.55689 * 19 10 9 21 21 H 1.08998 * 111.22223 * 279.17411 * 20 19 10 22 22 O 1.42895 * 110.90780 * 155.27541 * 20 19 10 23 23 C 1.50706 * 120.00494 * 179.97438 * 2 1 3 24 24 C 1.53003 * 117.49310 * 4.24588 * 23 2 1 25 25 C 1.53000 * 60.00063 * 252.50946 * 24 23 2 26 26 H 1.08998 * 109.47435 * 64.21240 * 1 2 3 27 27 H 1.09001 * 109.47028 * 184.20734 * 1 2 3 28 28 H 1.08997 * 109.47336 * 304.20708 * 1 2 3 29 29 H 1.07997 * 120.00356 * 184.29107 * 3 2 1 30 30 H 0.97002 * 120.00004 * 359.97438 * 6 4 3 31 31 H 1.09001 * 109.88187 * 144.41105 * 9 7 6 32 32 H 1.09003 * 109.87877 * 23.24840 * 9 7 6 33 33 H 0.97004 * 119.99941 * 180.02562 * 14 13 11 34 34 H 1.09004 * 110.36660 * 94.48003 * 19 10 9 35 35 H 1.09000 * 110.36912 * 216.80543 * 19 10 9 36 36 H 0.96700 * 114.00091 * 67.96845 * 22 20 19 37 37 H 1.09001 * 115.54969 * 149.94935 * 23 2 1 38 38 H 1.08992 * 117.49979 * 0.02562 * 24 23 2 39 39 H 1.09004 * 117.49185 * 145.02117 * 24 23 2 40 40 H 1.08995 * 117.49845 * 252.51394 * 25 24 23 41 41 H 1.08999 * 117.49449 * 107.48878 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4394 2.4239 0.0954 5 8 0.2237 2.4292 0.0663 6 7 2.1158 3.5836 0.2148 7 6 1.3863 4.8506 0.3093 8 1 0.4712 4.7277 0.8887 9 6 1.0723 5.4059 -1.0959 10 7 2.1246 6.3781 -1.4262 11 6 2.2003 7.1109 -2.5806 12 1 1.4410 7.0009 -3.3407 13 6 3.2495 7.9995 -2.7709 14 7 4.1718 8.1374 -1.8422 15 14 3.3532 8.9986 -4.3459 16 1 2.2032 8.6611 -5.2228 17 1 3.3162 10.4463 -4.0171 18 1 4.6222 8.6831 -5.0496 19 6 3.0881 6.4288 -0.3116 20 6 2.2831 5.9556 0.9272 21 1 1.6792 6.7647 1.3379 22 8 3.1522 5.4125 1.9231 23 6 2.2606 -1.3051 0.0006 24 6 1.4417 -2.5937 -0.0993 25 6 2.1055 -2.2098 1.2247 26 1 -0.3634 0.4471 -0.9253 27 1 -0.3633 -1.0249 0.0754 28 1 -0.3634 0.5777 0.8499 29 1 3.2496 1.1531 -0.0700 30 1 3.0855 3.5793 0.2383 31 1 0.1003 5.8990 -1.0909 32 1 1.0751 4.5948 -1.8241 33 1 4.9049 8.7587 -1.9750 34 1 3.9248 5.7567 -0.5025 35 1 3.4452 7.4481 -0.1648 36 1 3.7322 6.0659 2.3377 37 1 3.2328 -1.2867 -0.4919 38 1 0.3581 -2.4974 -0.1659 39 1 1.8752 -3.4234 -0.6577 40 1 2.9757 -2.7870 1.5373 41 1 1.4585 -1.8611 2.0295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219279568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:43 Heat of formation + Delta-G solvation = -11.807867 kcal Electronic energy + Delta-G solvation = -22080.522870 eV Core-core repulsion = 18769.655112 eV Total energy + Delta-G solvation = -3310.867759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.76686 -38.38131 -37.48322 -35.07285 -33.77092 -33.04486 -31.64478 -28.73363 -27.62634 -26.88689 -24.65441 -23.83520 -22.59835 -20.81747 -20.43017 -19.66536 -18.48301 -17.10768 -16.99916 -16.43784 -16.22922 -15.33785 -14.83442 -14.78610 -14.49185 -13.90139 -13.52857 -13.19421 -13.02727 -12.81316 -12.64224 -12.33053 -12.18092 -12.15044 -11.64027 -11.33136 -11.32336 -11.09494 -10.95729 -10.91894 -10.88877 -10.64019 -10.16462 -10.02318 -9.84919 -9.26557 -9.18643 -8.99217 -8.74278 -8.40766 -6.91564 -5.72836 -3.14639 1.45648 3.36464 3.42526 3.44938 3.50093 3.58713 3.77608 4.37958 4.47499 4.62975 4.64732 4.71391 4.90011 5.06447 5.29776 5.34393 5.38931 5.41386 5.55823 5.57139 5.69075 5.72855 5.85115 5.87431 5.88526 5.94314 6.14048 6.18130 6.27081 6.50317 6.54593 6.62419 6.67803 7.07294 7.28487 7.53924 7.70818 8.02923 8.06854 8.25723 8.67286 9.14137 9.74630 10.37613 11.31319 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.003720 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.756919 B = 7524.981631 C = 7923.158910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.014 4.014 3 C -0.215 4.215 4 C 0.543 3.457 5 O -0.552 6.552 6 N -0.695 5.695 7 C 0.145 3.855 8 H 0.089 0.911 9 C 0.126 3.874 10 N -0.601 5.601 11 C -0.220 4.220 12 H 0.080 0.920 13 C -0.012 4.012 14 N -0.925 5.925 15 Si 0.917 3.083 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.128 3.872 20 C 0.063 3.937 21 H 0.070 0.930 22 O -0.566 6.566 23 C -0.129 4.129 24 C -0.178 4.178 25 C -0.165 4.165 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.405 0.595 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.252 0.748 34 H 0.021 0.979 35 H 0.111 0.889 36 H 0.378 0.622 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -15.652 7.375 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.016 4.016 3 C -0.236 4.236 4 C 0.333 3.667 5 O -0.434 6.434 6 N -0.344 5.344 7 C 0.040 3.960 8 H 0.107 0.893 9 C 0.000 4.000 10 N -0.328 5.328 11 C -0.348 4.348 12 H 0.098 0.902 13 C -0.207 4.207 14 N -0.574 5.574 15 Si 0.747 3.253 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.217 1.217 19 C 0.002 3.998 20 C 0.002 3.998 21 H 0.088 0.912 22 O -0.370 6.370 23 C -0.147 4.147 24 C -0.214 4.214 25 C -0.202 4.202 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.142 0.858 30 H 0.240 0.760 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.128 0.872 36 H 0.225 0.775 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.135 -16.011 7.086 17.787 hybrid contribution 1.093 1.110 -0.773 1.739 sum -2.042 -14.902 6.312 16.312 Atomic orbital electron populations 1.21091 0.90775 1.00868 1.04590 1.21699 0.96135 0.92181 0.91540 1.22336 1.00168 0.92001 1.09087 1.18437 0.87348 0.84225 0.76718 1.90734 1.13696 1.87501 1.51429 1.45580 1.10630 1.05234 1.72946 1.21950 0.94843 0.82460 0.96776 0.89288 1.21756 0.92943 0.92520 0.92814 1.44355 1.25012 1.45380 1.18064 1.19165 1.07296 1.14894 0.93451 0.90218 1.24784 0.97117 1.00108 0.98716 1.69755 1.14549 1.39947 1.33111 0.85956 0.77432 0.79672 0.82202 1.20469 1.21707 1.21728 1.22605 0.90335 1.03283 0.83546 1.23751 0.92178 0.94083 0.89756 0.91184 1.86341 1.55301 1.39581 1.55806 1.21240 1.00460 0.89158 1.03871 1.23130 1.00076 0.97634 1.00579 1.22965 1.03382 1.02203 0.91684 0.90013 0.92984 0.89629 0.85823 0.76023 0.94690 0.94989 0.93742 0.96157 0.87161 0.77528 0.86708 0.87818 0.88453 0.88320 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.22 36.00 0.30 -1.19 16 2 C -0.01 -0.17 5.81 -101.17 -0.59 -0.76 16 3 C -0.22 -3.00 9.67 -37.80 -0.37 -3.37 16 4 C 0.54 9.39 7.72 -12.66 -0.10 9.29 16 5 O -0.55 -10.71 12.83 5.27 0.07 -10.64 16 6 N -0.69 -12.28 4.77 -53.21 -0.25 -12.53 16 7 C 0.15 2.78 3.13 -66.10 -0.21 2.57 16 8 H 0.09 1.68 7.70 -51.93 -0.40 1.28 16 9 C 0.13 2.79 6.98 -3.07 -0.02 2.77 16 10 N -0.60 -15.25 3.39 -169.93 -0.58 -15.83 16 11 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 12 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 13 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 14 N -0.92 -26.19 10.08 55.49 0.56 -25.63 16 15 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 C 0.13 2.96 5.62 -2.41 -0.01 2.95 16 20 C 0.06 1.17 4.23 -24.46 -0.10 1.07 16 21 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 22 O -0.57 -9.17 12.63 -35.23 -0.44 -9.61 16 23 C -0.13 -1.25 6.01 -91.77 -0.55 -1.80 16 24 C -0.18 -1.42 9.86 -26.73 -0.26 -1.68 16 25 C -0.17 -1.34 10.23 -26.73 -0.27 -1.62 16 26 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 27 H 0.05 0.52 5.44 -51.93 -0.28 0.24 16 28 H 0.09 1.22 6.84 -51.93 -0.36 0.87 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.40 6.87 8.18 -40.82 -0.33 6.54 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.11 2.85 5.85 -51.93 -0.30 2.54 16 36 H 0.38 4.68 9.12 45.56 0.42 5.09 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 0.82 5.90 -51.93 -0.31 0.51 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -31.34 333.66 -8.39 -39.72 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.31 Total: 11.07 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.44 Total: 1.55 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.27 Total: -53.99 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.38 Total: -20.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.34 -8.39 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219279568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.917 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds