Wall clock time and date at job start Tue Mar 31 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32996 * 120.00098 * 2 1 4 4 C 1.47108 * 119.99630 * 4.29371 * 3 2 1 5 5 O 1.21612 * 119.99738 * 354.11299 * 4 3 2 6 6 N 1.34780 * 119.99782 * 174.12120 * 4 3 2 7 7 C 1.46501 * 119.99776 * 179.97438 * 6 4 3 8 8 H 1.09006 * 110.77969 * 36.78315 * 7 6 4 9 9 C 1.54321 * 110.72112 * 273.54417 * 7 6 4 10 10 N 1.47023 * 107.27244 * 263.83165 * 9 7 6 11 11 C 1.36939 * 125.64960 * 181.02277 * 10 9 7 12 12 H 1.08001 * 119.99741 * 0.27517 * 11 10 9 13 13 C 1.38802 * 119.99867 * 179.97438 * 11 10 9 14 14 N 1.31621 * 120.00095 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46998 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47183 * 119.99902 * 15 13 11 18 18 H 1.48494 * 109.47318 * 240.00030 * 15 13 11 19 19 C 1.47424 * 108.70129 * 1.28452 * 10 9 7 20 20 C 1.55135 * 104.72298 * 335.55689 * 19 10 9 21 21 H 1.08998 * 111.22223 * 279.17411 * 20 19 10 22 22 O 1.42895 * 110.90780 * 155.27541 * 20 19 10 23 23 C 1.50706 * 120.00494 * 179.97438 * 2 1 3 24 24 C 1.53003 * 117.49310 * 4.24588 * 23 2 1 25 25 C 1.53000 * 60.00063 * 252.50946 * 24 23 2 26 26 H 1.08998 * 109.47435 * 64.21240 * 1 2 3 27 27 H 1.09001 * 109.47028 * 184.20734 * 1 2 3 28 28 H 1.08997 * 109.47336 * 304.20708 * 1 2 3 29 29 H 1.07997 * 120.00356 * 184.29107 * 3 2 1 30 30 H 0.97002 * 120.00004 * 359.97438 * 6 4 3 31 31 H 1.09001 * 109.88187 * 144.41105 * 9 7 6 32 32 H 1.09003 * 109.87877 * 23.24840 * 9 7 6 33 33 H 0.97004 * 119.99941 * 180.02562 * 14 13 11 34 34 H 1.09004 * 110.36660 * 94.48003 * 19 10 9 35 35 H 1.09000 * 110.36912 * 216.80543 * 19 10 9 36 36 H 0.96700 * 114.00091 * 67.96845 * 22 20 19 37 37 H 1.09001 * 115.54969 * 149.94935 * 23 2 1 38 38 H 1.08992 * 117.49979 * 0.02562 * 24 23 2 39 39 H 1.09004 * 117.49185 * 145.02117 * 24 23 2 40 40 H 1.08995 * 117.49845 * 252.51394 * 25 24 23 41 41 H 1.08999 * 117.49449 * 107.48878 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4394 2.4239 0.0954 5 8 0.2237 2.4292 0.0663 6 7 2.1158 3.5836 0.2148 7 6 1.3863 4.8506 0.3093 8 1 0.4712 4.7277 0.8887 9 6 1.0723 5.4059 -1.0959 10 7 2.1246 6.3781 -1.4262 11 6 2.2003 7.1109 -2.5806 12 1 1.4410 7.0009 -3.3407 13 6 3.2495 7.9995 -2.7709 14 7 4.1718 8.1374 -1.8422 15 14 3.3532 8.9986 -4.3459 16 1 2.2032 8.6611 -5.2228 17 1 3.3162 10.4463 -4.0171 18 1 4.6222 8.6831 -5.0496 19 6 3.0881 6.4288 -0.3116 20 6 2.2831 5.9556 0.9272 21 1 1.6792 6.7647 1.3379 22 8 3.1522 5.4125 1.9231 23 6 2.2606 -1.3051 0.0006 24 6 1.4417 -2.5937 -0.0993 25 6 2.1055 -2.2098 1.2247 26 1 -0.3634 0.4471 -0.9253 27 1 -0.3633 -1.0249 0.0754 28 1 -0.3634 0.5777 0.8499 29 1 3.2496 1.1531 -0.0700 30 1 3.0855 3.5793 0.2383 31 1 0.1003 5.8990 -1.0909 32 1 1.0751 4.5948 -1.8241 33 1 4.9049 8.7587 -1.9750 34 1 3.9248 5.7567 -0.5025 35 1 3.4452 7.4481 -0.1648 36 1 3.7322 6.0659 2.3377 37 1 3.2328 -1.2867 -0.4919 38 1 0.3581 -2.4974 -0.1659 39 1 1.8752 -3.4234 -0.6577 40 1 2.9757 -2.7870 1.5373 41 1 1.4585 -1.8611 2.0295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219279568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:43 Heat of formation + Delta-G solvation = -33.779049 kcal Electronic energy + Delta-G solvation = -22081.475612 eV Core-core repulsion = 18769.655112 eV Total energy + Delta-G solvation = -3311.820501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14899 -39.64445 -38.61085 -36.65539 -35.35694 -34.08223 -33.51427 -30.43419 -29.09988 -28.35830 -26.44234 -24.98187 -23.20778 -22.34980 -22.00934 -21.19574 -19.54274 -18.94568 -18.43513 -17.79545 -17.24066 -16.98948 -16.38775 -16.01511 -15.72836 -15.55896 -14.88707 -14.77148 -14.38851 -14.27640 -13.90032 -13.88965 -13.71279 -13.19301 -12.99223 -12.86647 -12.75922 -12.69407 -12.48890 -12.10693 -12.01492 -11.96459 -11.74189 -11.60695 -11.31570 -10.85771 -10.77073 -10.58113 -10.16797 -9.71638 -8.95459 -7.82113 -5.27367 0.37133 1.46823 1.46920 1.57682 2.26474 2.28930 2.46411 3.00507 3.10676 3.28877 3.60139 3.67384 3.79607 3.90137 3.96100 4.01455 4.14975 4.16869 4.29457 4.31627 4.51208 4.64531 4.65566 4.81786 4.85058 4.85864 4.93601 5.01283 5.12217 5.15252 5.28370 5.39745 5.44300 5.52223 5.55670 5.61778 5.70619 6.22787 6.66384 6.86645 7.06068 7.31505 7.70036 8.32728 9.19267 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.003720 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.756919 B = 7524.981631 C = 7923.158910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.004 3.996 3 C -0.239 4.239 4 C 0.538 3.462 5 O -0.580 6.580 6 N -0.695 5.695 7 C 0.153 3.847 8 H 0.096 0.904 9 C 0.128 3.872 10 N -0.618 5.618 11 C -0.243 4.243 12 H 0.077 0.923 13 C -0.060 4.060 14 N -0.944 5.944 15 Si 0.981 3.019 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.291 1.291 19 C 0.136 3.864 20 C 0.087 3.913 21 H 0.083 0.917 22 O -0.561 6.561 23 C -0.148 4.148 24 C -0.169 4.169 25 C -0.156 4.156 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.408 0.592 31 H 0.037 0.963 32 H 0.015 0.985 33 H 0.250 0.750 34 H -0.001 1.001 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 -17.248 7.832 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.002 3.998 3 C -0.260 4.260 4 C 0.329 3.671 5 O -0.463 6.463 6 N -0.345 5.345 7 C 0.047 3.953 8 H 0.114 0.886 9 C 0.001 3.999 10 N -0.346 5.346 11 C -0.372 4.372 12 H 0.095 0.905 13 C -0.253 4.253 14 N -0.593 5.593 15 Si 0.810 3.190 16 H -0.196 1.196 17 H -0.214 1.214 18 H -0.218 1.218 19 C 0.010 3.990 20 C 0.026 3.974 21 H 0.101 0.899 22 O -0.368 6.368 23 C -0.166 4.166 24 C -0.205 4.205 25 C -0.193 4.193 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.243 0.757 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.017 0.983 35 H 0.103 0.897 36 H 0.247 0.753 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.898 -17.620 7.568 19.394 hybrid contribution 0.996 1.522 -0.901 2.030 sum -1.902 -16.098 6.667 17.527 Atomic orbital electron populations 1.21044 0.91252 1.02107 1.02835 1.22002 0.96048 0.93227 0.88495 1.22303 1.00945 0.90774 1.11928 1.19014 0.87244 0.85035 0.75772 1.90717 1.14911 1.87942 1.52722 1.45569 1.10710 1.04945 1.73227 1.21754 0.95460 0.83219 0.94869 0.88647 1.21801 0.92304 0.91449 0.94303 1.44585 1.26071 1.45772 1.18145 1.19453 1.07578 1.15615 0.94514 0.90536 1.25574 0.96877 1.01096 1.01732 1.69971 1.14721 1.40222 1.34426 0.84968 0.77332 0.77989 0.78747 1.19599 1.21415 1.21790 1.22407 0.90139 1.01348 0.85091 1.23337 0.91570 0.93967 0.88485 0.89922 1.86319 1.55394 1.40292 1.54797 1.21299 1.01067 0.88253 1.06002 1.23244 1.00006 0.96787 1.00493 1.23067 1.03944 1.01071 0.91248 0.91821 0.90205 0.91377 0.84041 0.75651 0.94526 0.96681 0.94057 0.98318 0.89744 0.75277 0.85691 0.87796 0.86669 0.86502 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 8.22 71.23 0.59 -2.29 16 2 C 0.00 0.10 5.81 -17.62 -0.10 0.00 16 3 C -0.24 -6.51 9.67 23.43 0.23 -6.28 16 4 C 0.54 18.65 7.72 86.57 0.67 19.32 16 5 O -0.58 -22.80 12.83 -4.07 -0.05 -22.86 16 6 N -0.70 -24.55 4.77 -440.50 -2.10 -26.65 16 7 C 0.15 5.84 3.13 46.18 0.14 5.98 16 8 H 0.10 3.56 7.70 -2.38 -0.02 3.54 16 9 C 0.13 5.74 6.98 86.73 0.61 6.35 16 10 N -0.62 -32.01 3.39 -691.54 -2.35 -34.35 16 11 C -0.24 -13.70 10.27 84.03 0.86 -12.84 16 12 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 13 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 14 N -0.94 -54.22 10.08 21.65 0.22 -54.01 16 15 Si 0.98 45.24 29.55 68.60 2.03 47.26 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 19 C 0.14 6.39 5.62 86.93 0.49 6.87 16 20 C 0.09 3.20 4.23 32.06 0.14 3.33 16 21 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 22 O -0.56 -17.28 12.63 -148.98 -1.88 -19.16 16 23 C -0.15 -2.50 6.01 -11.54 -0.07 -2.57 16 24 C -0.17 -2.17 9.86 30.60 0.30 -1.87 16 25 C -0.16 -2.06 10.23 30.60 0.31 -1.75 16 26 H 0.06 1.82 7.58 -2.39 -0.02 1.81 16 27 H 0.08 1.47 5.44 -2.39 -0.01 1.46 16 28 H 0.07 1.95 6.84 -2.39 -0.02 1.93 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.41 13.79 8.18 -92.71 -0.76 13.03 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.02 0.73 8.04 -2.39 -0.02 0.71 16 33 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 34 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 35 H 0.08 4.45 5.85 -2.39 -0.01 4.44 16 36 H 0.40 9.05 9.12 -74.06 -0.68 8.38 16 37 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 1.33 5.90 -2.39 -0.01 1.32 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -67.93 333.66 0.11 -67.82 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.38 Total: 30.58 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 4.63 Total: 11.37 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.23 Total: -115.01 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.93 Total: -42.02 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -67.93 0.11 -67.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219279568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.040 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds