Wall clock time and date at job start Tue Mar 31 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47082 * 2 1 4 4 C 1.52997 * 109.46706 * 119.99882 * 2 1 3 5 5 N 1.46510 * 109.46809 * 184.99872 * 4 2 1 6 6 C 1.38825 * 119.99840 * 180.02562 * 5 4 2 7 7 C 1.39797 * 119.58412 * 359.97438 * 6 5 4 8 8 C 1.38590 * 119.48864 * 180.02562 * 7 6 5 9 9 C 1.38385 * 118.68645 * 0.02562 * 8 7 6 10 10 C 1.40563 * 119.14613 * 359.97438 * 9 8 7 11 11 C 1.41308 * 119.78502 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00381 * 6.43389 * 11 10 9 13 13 C 1.40023 * 120.00088 * 186.43314 * 11 10 9 14 14 N 1.30749 * 120.00022 * 176.32985 * 13 11 10 15 15 Si 1.86804 * 120.00001 * 356.05720 * 13 11 10 16 16 H 1.48492 * 109.47065 * 180.27185 * 15 13 11 17 17 H 1.48496 * 109.46834 * 300.27506 * 15 13 11 18 18 H 1.48500 * 109.47032 * 60.27075 * 15 13 11 19 19 N 1.31958 * 119.58381 * 180.30126 * 6 5 4 20 20 O 1.42904 * 109.47335 * 240.00016 * 2 1 3 21 21 C 1.42897 * 113.99940 * 59.99858 * 20 2 1 22 22 C 1.52997 * 109.47243 * 180.02562 * 21 20 2 23 23 O 1.42899 * 109.47363 * 65.00075 * 22 21 20 24 24 H 1.09000 * 109.47133 * 300.00735 * 1 2 3 25 25 H 1.09001 * 109.46511 * 59.99749 * 1 2 3 26 26 H 1.08997 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47031 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47360 * 299.99998 * 3 2 1 29 29 H 1.09006 * 109.47119 * 59.99936 * 3 2 1 30 30 H 1.08992 * 109.47124 * 65.00316 * 4 2 1 31 31 H 1.09002 * 109.47678 * 304.99897 * 4 2 1 32 32 H 0.96996 * 119.99848 * 0.02562 * 5 4 2 33 33 H 1.08002 * 120.25638 * 0.04867 * 7 6 5 34 34 H 1.08007 * 120.65934 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.42947 * 180.02562 * 9 8 7 36 36 H 0.96991 * 120.00266 * 354.92852 * 14 13 11 37 37 H 1.09003 * 109.47419 * 300.00688 * 21 20 2 38 38 H 1.09003 * 109.47156 * 60.00592 * 21 20 2 39 39 H 1.08994 * 109.47404 * 185.00432 * 22 21 20 40 40 H 1.09002 * 109.47144 * 305.00150 * 22 21 20 41 41 H 0.96695 * 114.00099 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5001 -0.6179 1.3110 6 6 4.1933 -1.2005 2.3633 7 6 3.4893 -1.8832 3.3596 8 6 4.1833 -2.4636 4.4094 9 6 5.5619 -2.3477 4.4391 10 6 6.2125 -1.6486 3.4077 11 6 7.6198 -1.5225 3.4242 12 1 8.2005 -2.0483 4.1677 13 6 8.2617 -0.7157 2.4767 14 7 9.5562 -0.5416 2.5357 15 14 7.2695 0.1059 1.1239 16 1 8.1778 0.8942 0.2530 17 1 6.5837 -0.9322 0.3131 18 1 6.2581 1.0085 1.7302 19 7 5.5078 -1.0973 2.4139 20 8 2.0064 -0.6736 -1.1668 21 6 1.5848 -0.0774 -2.3950 22 6 2.1496 -0.8772 -3.5706 23 8 1.5808 -2.1881 -3.5720 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.7516 -1.7714 1.2056 31 1 1.6053 -0.2617 2.1370 32 1 3.9823 -0.1424 0.6166 33 1 2.4129 -1.9581 3.3113 34 1 3.6584 -2.9952 5.1895 35 1 6.1308 -2.7895 5.2438 36 1 10.0618 -0.9102 3.2768 37 1 0.4959 -0.0789 -2.4447 38 1 1.9493 0.9487 -2.4448 39 1 1.9030 -0.3731 -4.5050 40 1 3.2327 -0.9512 -3.4727 41 1 1.8948 -2.7523 -4.2918 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324067021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:34 Heat of formation + Delta-G solvation = -77.301791 kcal Electronic energy + Delta-G solvation = -22335.827031 eV Core-core repulsion = 19022.119243 eV Total energy + Delta-G solvation = -3313.707788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.52785 -38.52152 -36.90021 -35.20041 -33.57901 -32.42389 -31.00916 -29.56185 -29.07843 -27.57917 -25.56192 -25.20825 -22.61786 -21.76710 -20.49287 -19.89345 -18.26534 -17.75061 -16.92461 -16.57086 -15.65550 -15.17534 -15.08853 -14.71227 -14.38237 -13.94650 -13.77293 -13.54844 -13.44365 -13.07492 -12.82102 -12.54447 -12.38025 -12.13827 -12.04950 -12.02748 -11.69898 -11.39267 -11.22209 -10.69331 -10.58572 -10.54328 -10.20705 -10.15600 -9.60934 -9.52112 -9.44410 -8.89028 -8.38675 -7.61655 -7.13241 -6.77137 -4.69352 2.75926 2.91255 3.50953 3.65107 3.77663 3.89744 4.07518 4.13703 4.53335 4.61932 4.76092 4.81446 4.89975 4.94912 5.03054 5.18263 5.27525 5.38501 5.50253 5.60350 5.64377 5.65413 5.70481 5.89853 5.91469 5.94405 5.98651 6.15736 6.37571 6.57817 6.69052 6.70209 7.18869 7.34041 7.47237 7.52318 7.55649 7.68921 7.97812 8.10588 8.38931 8.56118 8.82157 9.68093 10.09690 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.005272 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.944853 B = 5309.321062 C = 6132.405230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 C -0.181 4.181 4 C 0.156 3.844 5 N -0.734 5.734 6 C 0.444 3.556 7 C -0.366 4.366 8 C -0.016 4.016 9 C -0.308 4.308 10 C 0.288 3.712 11 C -0.477 4.477 12 H 0.081 0.919 13 C 0.045 3.955 14 N -0.810 5.810 15 Si 1.161 2.839 16 H -0.340 1.340 17 H -0.289 1.289 18 H -0.291 1.291 19 N -0.621 5.621 20 O -0.359 6.359 21 C 0.055 3.945 22 C 0.077 3.923 23 O -0.566 6.566 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.396 0.604 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.282 0.718 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 3.052 -9.883 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.061 3.939 3 C -0.238 4.238 4 C 0.030 3.970 5 N -0.370 5.370 6 C 0.206 3.794 7 C -0.392 4.392 8 C -0.040 4.040 9 C -0.331 4.331 10 C 0.164 3.836 11 C -0.509 4.509 12 H 0.099 0.901 13 C -0.176 4.176 14 N -0.432 5.432 15 Si 0.999 3.001 16 H -0.274 1.274 17 H -0.217 1.217 18 H -0.220 1.220 19 N -0.350 5.350 20 O -0.279 6.279 21 C -0.022 4.022 22 C -0.001 4.001 23 O -0.371 6.371 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.278 4.368 -11.136 20.201 hybrid contribution -0.154 -1.335 1.462 1.986 sum -16.433 3.033 -9.674 19.308 Atomic orbital electron populations 1.22336 0.94901 1.03253 1.02640 1.21756 0.93481 0.92248 0.86453 1.22441 1.02898 0.95908 1.02559 1.21122 0.81391 1.00219 0.94242 1.44211 1.04543 1.61639 1.26625 1.18060 0.88124 0.87474 0.85703 1.20460 0.98185 1.18495 1.02018 1.20696 0.93980 0.94203 0.95135 1.21374 0.94010 1.13971 1.03712 1.18256 0.93121 0.86230 0.85990 1.20738 0.90810 1.24941 1.14440 0.90061 1.27800 0.95715 0.93192 1.00901 1.70658 1.07502 1.35374 1.29679 0.81652 0.70290 0.75453 0.72727 1.27443 1.21706 1.21970 1.65743 1.05622 1.33982 1.29644 1.88143 1.74029 1.53359 1.12339 1.22573 0.99216 0.95818 0.84548 1.22200 0.97833 0.83979 0.96072 1.86561 1.70329 1.24827 1.55343 0.91184 0.91967 0.91290 0.91181 0.92207 0.91020 0.91685 0.91182 0.76782 0.88227 0.88234 0.88191 0.90724 0.92501 0.91754 0.92463 0.92527 0.77606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.25 37.16 0.31 -1.39 16 2 C 0.10 1.26 0.80 -90.62 -0.07 1.18 16 3 C -0.18 -2.06 8.02 37.16 0.30 -1.76 16 4 C 0.16 2.36 4.05 -4.04 -0.02 2.35 16 5 N -0.73 -14.41 5.36 -60.39 -0.32 -14.73 16 6 C 0.44 10.45 7.65 -155.32 -1.19 9.26 16 7 C -0.37 -8.01 9.34 -38.87 -0.36 -8.37 16 8 C -0.02 -0.36 10.15 -39.40 -0.40 -0.76 16 9 C -0.31 -7.65 9.83 -38.65 -0.38 -8.03 16 10 C 0.29 7.92 6.42 -85.00 -0.55 7.38 16 11 C -0.48 -13.61 9.57 -37.75 -0.36 -13.97 16 12 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 13 C 0.04 1.27 5.52 -17.34 -0.10 1.17 16 14 N -0.81 -22.90 13.65 55.55 0.76 -22.14 16 15 Si 1.16 29.89 25.45 -169.99 -4.33 25.56 16 16 H -0.34 -8.61 7.11 56.52 0.40 -8.20 16 17 H -0.29 -7.51 6.97 56.52 0.39 -7.12 16 18 H -0.29 -7.45 6.91 56.52 0.39 -7.06 16 19 N -0.62 -16.55 4.55 -10.33 -0.05 -16.59 16 20 O -0.36 -5.15 9.90 -40.08 -0.40 -5.55 16 21 C 0.06 0.60 5.52 37.16 0.21 0.80 16 22 C 0.08 0.77 7.43 37.16 0.28 1.04 16 23 O -0.57 -6.41 13.62 -40.08 -0.55 -6.96 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.93 6.57 -51.93 -0.34 0.59 16 28 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 31 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 32 H 0.40 7.87 7.11 -40.82 -0.29 7.58 16 33 H 0.10 1.89 6.68 -52.49 -0.35 1.54 16 34 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.28 7.60 8.72 -40.82 -0.36 7.25 16 37 H 0.06 0.57 6.42 -51.93 -0.33 0.23 16 38 H 0.06 0.58 6.42 -51.93 -0.33 0.25 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.38 2.49 9.12 45.56 0.42 2.91 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -33.29 330.92 -7.52 -40.81 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.29 Total: 5.73 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.34 Total: -11.11 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.39 Total: -53.47 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.94 Total: -12.51 kcal Atomic # 14 Polarization: 29.89 SS G_CDS: -4.33 Total: 25.56 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.29 -7.52 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324067021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.493 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds