Wall clock time and date at job start Tue Mar 31 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 N 1.46500 * 109.47520 * 185.00200 * 3 2 1 7 7 N 1.28441 * 125.19432 * 300.02783 * 6 3 2 8 8 C 1.30872 * 110.94291 * 179.97438 * 7 6 3 9 9 C 1.39636 * 107.88399 * 359.97438 * 8 7 6 10 10 C 1.36650 * 125.19923 * 119.71829 * 6 3 2 11 11 C 1.47015 * 126.88848 * 359.97438 * 10 6 3 12 12 O 1.21549 * 119.99515 * 179.97438 * 11 10 6 13 13 O 1.34807 * 120.00170 * 359.97438 * 11 10 6 14 14 C 1.45200 * 116.99639 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47490 * 329.99547 * 14 13 11 16 16 C 1.50709 * 109.46838 * 209.99807 * 14 13 11 17 17 H 1.07993 * 120.00180 * 0.02562 * 16 14 13 18 18 C 1.37882 * 119.99903 * 179.97438 * 16 14 13 19 19 N 1.31519 * 119.99767 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00157 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46804 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46902 * 120.00094 * 20 18 16 23 23 H 1.48499 * 109.47188 * 240.00435 * 20 18 16 24 24 C 1.53001 * 109.47435 * 90.00158 * 14 13 11 25 25 C 1.52994 * 109.46837 * 295.00146 * 24 14 13 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 32 32 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 34 34 H 1.08004 * 126.05926 * 180.02562 * 8 7 6 35 35 H 1.07999 * 127.32571 * 180.02562 * 9 8 7 36 36 H 0.97003 * 119.99474 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.46632 * 54.99722 * 24 14 13 38 38 H 1.09001 * 109.47642 * 174.99446 * 24 14 13 39 39 H 1.08999 * 109.47217 * 179.97438 * 25 24 14 40 40 H 1.09003 * 109.47163 * 299.99251 * 25 24 14 41 41 H 1.09001 * 109.47319 * 59.99745 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5000 1.4443 -0.1204 7 7 4.3119 0.8939 0.7087 8 6 5.5533 1.0643 0.3310 9 6 5.5430 1.7957 -0.8584 10 6 4.2059 2.0269 -1.1352 11 6 3.6562 2.7543 -2.2884 12 8 4.4043 3.2255 -3.1224 13 8 2.3224 2.8988 -2.4208 14 6 1.8508 3.6291 -3.5837 15 1 2.5946 4.3715 -3.8729 16 6 0.5539 4.3207 -3.2505 17 1 0.1271 4.2217 -2.2635 18 6 -0.0873 5.0808 -4.2057 19 7 0.4327 5.2019 -5.4076 20 14 -1.6943 5.9387 -3.7926 21 1 -2.0636 5.6465 -2.3842 22 1 -1.5322 7.4045 -3.9674 23 1 -2.7645 5.4476 -4.6974 24 6 1.6261 2.6544 -4.7415 25 6 2.9649 2.0448 -5.1620 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0699 1.5875 2.1492 32 1 1.9982 3.1544 1.3072 33 1 0.5489 2.1251 1.3970 34 1 6.4303 0.7025 0.8473 35 1 6.3962 2.1107 -1.4409 36 1 -0.0182 5.7369 -6.0795 37 1 0.9498 1.8613 -4.4226 38 1 1.1885 3.1875 -5.5856 39 1 2.8048 1.3501 -5.9865 40 1 3.6411 2.8380 -5.4809 41 1 3.4024 1.5117 -4.3179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343502940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:24 Heat of formation + Delta-G solvation = -27.406172 kcal Electronic energy + Delta-G solvation = -23173.885043 eV Core-core repulsion = 19862.340891 eV Total energy + Delta-G solvation = -3311.544152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.37782 -39.42626 -36.49652 -35.77639 -33.61533 -31.61786 -31.39653 -30.63360 -28.89555 -27.38752 -24.89657 -24.01574 -22.82642 -22.14916 -20.63398 -19.98536 -19.35152 -17.65743 -16.74741 -16.11770 -15.91916 -15.28361 -15.00810 -14.94866 -14.61242 -13.96287 -13.65851 -13.28985 -13.09311 -12.86308 -12.63620 -12.27936 -12.17717 -11.78010 -11.68651 -11.56544 -11.45024 -11.29330 -11.07884 -11.00837 -10.84032 -10.74317 -10.43422 -10.26367 -9.94147 -9.79266 -9.48705 -9.01942 -8.90786 -8.84921 -8.53921 -6.26620 -4.34468 1.44811 2.60512 2.77249 3.17698 3.23910 3.27806 3.44992 3.49150 4.25574 4.53350 4.82943 4.96743 5.05161 5.07637 5.20581 5.38725 5.41514 5.55407 5.57588 5.72250 5.81972 5.91081 5.95568 6.01386 6.10196 6.17327 6.22899 6.26804 6.33435 6.39875 6.65264 6.77441 6.86584 6.95809 7.08348 7.12574 7.51725 7.64007 7.81746 8.05026 8.19436 8.49241 8.76324 9.31042 10.80152 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.006271 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.698061 B = 4463.870265 C = 5352.387033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.128 3.872 4 H 0.142 0.858 5 C -0.158 4.158 6 N -0.253 5.253 7 N -0.275 5.275 8 C -0.015 4.015 9 C -0.166 4.166 10 C -0.016 4.016 11 C 0.527 3.473 12 O -0.496 6.496 13 O -0.356 6.356 14 C 0.222 3.778 15 H 0.050 0.950 16 C -0.523 4.523 17 H 0.069 0.931 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.910 3.090 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.135 4.135 25 C -0.144 4.144 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.185 0.815 35 H 0.162 0.838 36 H 0.267 0.733 37 H 0.042 0.958 38 H 0.110 0.890 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -8.529 9.843 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.028 3.972 4 H 0.160 0.840 5 C -0.216 4.216 6 N -0.044 5.044 7 N -0.108 5.108 8 C -0.190 4.190 9 C -0.194 4.194 10 C -0.142 4.142 11 C 0.369 3.631 12 O -0.383 6.383 13 O -0.273 6.273 14 C 0.170 3.830 15 H 0.067 0.933 16 C -0.560 4.560 17 H 0.087 0.913 18 C -0.138 4.138 19 N -0.523 5.523 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.173 4.173 25 C -0.202 4.202 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.202 0.798 35 H 0.180 0.820 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.128 0.872 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.274 -8.724 10.190 13.605 hybrid contribution -0.123 0.855 -0.672 1.095 sum 2.150 -7.869 9.518 12.535 Atomic orbital electron populations 1.21797 0.93994 1.02210 1.02967 1.21798 0.97052 0.94435 1.03100 1.22271 0.72602 0.99308 1.02985 0.84028 1.22135 1.02680 1.00994 0.95772 1.46210 1.07628 1.35906 1.14614 1.73039 1.01513 1.17883 1.18394 1.23501 0.94465 1.03796 0.97249 1.22129 0.94666 1.03592 0.99056 1.21150 0.92402 1.06892 0.93736 1.19595 0.82957 0.77412 0.83120 1.90838 1.60403 1.45883 1.41215 1.86462 1.20683 1.69717 1.50391 1.20789 0.94960 0.89019 0.78204 0.93265 1.21026 1.05695 1.30026 0.99295 0.91277 1.24877 0.98247 0.96012 0.94674 1.69896 1.39308 1.39503 1.03585 0.86247 0.82244 0.79164 0.78672 1.19468 1.20709 1.20654 1.22030 0.95324 0.98382 1.01604 1.21872 0.99234 0.99973 0.99086 0.92203 0.92120 0.91429 0.90891 0.91441 0.91455 0.91845 0.89947 0.79840 0.82042 0.92324 0.93947 0.87171 0.94676 0.92690 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 37.16 0.36 -1.31 16 2 C -0.13 -1.59 5.58 -26.73 -0.15 -1.74 16 3 C 0.13 1.90 3.04 -67.93 -0.21 1.69 16 4 H 0.14 2.44 5.07 -51.93 -0.26 2.18 16 5 C -0.16 -2.01 9.13 37.16 0.34 -1.67 16 6 N -0.25 -4.14 3.09 -50.70 -0.16 -4.30 16 7 N -0.27 -4.19 11.57 30.58 0.35 -3.84 16 8 C -0.01 -0.20 12.03 -17.44 -0.21 -0.41 16 9 C -0.17 -2.56 10.85 -38.97 -0.42 -2.99 16 10 C -0.02 -0.29 6.96 -82.07 -0.57 -0.86 16 11 C 0.53 11.24 6.39 34.29 0.22 11.46 16 12 O -0.50 -11.55 14.10 -19.30 -0.27 -11.82 16 13 O -0.36 -8.00 6.94 -40.78 -0.28 -8.28 16 14 C 0.22 5.63 2.25 -27.88 -0.06 5.57 16 15 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 16 C -0.52 -13.81 8.90 -34.43 -0.31 -14.12 16 17 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 18 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 19 N -0.89 -24.17 11.29 55.43 0.63 -23.54 16 20 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.14 -3.23 5.49 -26.73 -0.15 -3.38 16 25 C -0.14 -3.11 8.56 37.15 0.32 -2.79 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.90 6.56 -51.93 -0.34 0.56 16 34 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 35 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 2.86 5.95 -51.93 -0.31 2.56 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 41 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -28.92 334.53 -6.76 -35.69 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.12 Total: 4.80 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.93 Total: -8.96 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.82 Total: -31.68 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.56 Total: -20.10 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.92 -6.76 -35.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343502940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.282 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds