Wall clock time and date at job start Tue Mar 31 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 N 1.46500 * 109.47520 * 185.00200 * 3 2 1 7 7 N 1.28441 * 125.19432 * 300.02783 * 6 3 2 8 8 C 1.30872 * 110.94291 * 179.97438 * 7 6 3 9 9 C 1.39636 * 107.88399 * 359.97438 * 8 7 6 10 10 C 1.36650 * 125.19923 * 119.71829 * 6 3 2 11 11 C 1.47015 * 126.88848 * 359.97438 * 10 6 3 12 12 O 1.21549 * 119.99515 * 179.97438 * 11 10 6 13 13 O 1.34807 * 120.00170 * 359.97438 * 11 10 6 14 14 C 1.45200 * 116.99639 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47490 * 329.99547 * 14 13 11 16 16 C 1.50709 * 109.46838 * 209.99807 * 14 13 11 17 17 H 1.07993 * 120.00180 * 0.02562 * 16 14 13 18 18 C 1.37882 * 119.99903 * 179.97438 * 16 14 13 19 19 N 1.31519 * 119.99767 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00157 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46804 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46902 * 120.00094 * 20 18 16 23 23 H 1.48499 * 109.47188 * 240.00435 * 20 18 16 24 24 C 1.53001 * 109.47435 * 90.00158 * 14 13 11 25 25 C 1.52994 * 109.46837 * 295.00146 * 24 14 13 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 32 32 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 34 34 H 1.08004 * 126.05926 * 180.02562 * 8 7 6 35 35 H 1.07999 * 127.32571 * 180.02562 * 9 8 7 36 36 H 0.97003 * 119.99474 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.46632 * 54.99722 * 24 14 13 38 38 H 1.09001 * 109.47642 * 174.99446 * 24 14 13 39 39 H 1.08999 * 109.47217 * 179.97438 * 25 24 14 40 40 H 1.09003 * 109.47163 * 299.99251 * 25 24 14 41 41 H 1.09001 * 109.47319 * 59.99745 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 7 3.5000 1.4443 -0.1204 7 7 4.3119 0.8939 0.7087 8 6 5.5533 1.0643 0.3310 9 6 5.5430 1.7957 -0.8584 10 6 4.2059 2.0269 -1.1352 11 6 3.6562 2.7543 -2.2884 12 8 4.4043 3.2255 -3.1224 13 8 2.3224 2.8988 -2.4208 14 6 1.8508 3.6291 -3.5837 15 1 2.5946 4.3715 -3.8729 16 6 0.5539 4.3207 -3.2505 17 1 0.1271 4.2217 -2.2635 18 6 -0.0873 5.0808 -4.2057 19 7 0.4327 5.2019 -5.4076 20 14 -1.6943 5.9387 -3.7926 21 1 -2.0636 5.6465 -2.3842 22 1 -1.5322 7.4045 -3.9674 23 1 -2.7645 5.4476 -4.6974 24 6 1.6261 2.6544 -4.7415 25 6 2.9649 2.0448 -5.1620 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0699 1.5875 2.1492 32 1 1.9982 3.1544 1.3072 33 1 0.5489 2.1251 1.3970 34 1 6.4303 0.7025 0.8473 35 1 6.3962 2.1107 -1.4409 36 1 -0.0182 5.7369 -6.0795 37 1 0.9498 1.8613 -4.4226 38 1 1.1885 3.1875 -5.5856 39 1 2.8048 1.3501 -5.9865 40 1 3.6411 2.8380 -5.4809 41 1 3.4024 1.5117 -4.3179 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343502940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:23 Heat of formation + Delta-G solvation = -42.308503 kcal Electronic energy + Delta-G solvation = -23174.531256 eV Core-core repulsion = 19862.340891 eV Total energy + Delta-G solvation = -3312.190365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.61851 -41.18227 -37.88233 -37.30431 -35.54694 -33.44498 -32.59022 -32.00018 -29.94818 -29.34148 -26.06637 -25.65587 -24.54734 -23.26793 -22.15021 -21.60983 -20.81036 -19.09304 -18.66573 -17.83880 -17.44014 -16.77743 -16.43905 -16.35415 -16.10133 -15.21987 -14.92737 -14.86215 -14.54766 -14.36352 -14.03119 -13.64250 -13.47762 -13.35605 -13.19195 -13.15181 -12.87910 -12.74463 -12.69864 -12.55172 -12.24990 -12.09727 -11.86191 -11.78161 -11.62849 -11.55769 -11.36421 -10.85641 -10.56141 -10.29106 -10.05666 -8.28417 -6.44992 0.01929 1.36835 1.42143 1.42811 1.55326 1.59180 1.81761 1.95500 2.39155 3.02136 3.37522 3.62368 3.79604 3.92944 4.11951 4.28743 4.34971 4.35937 4.37512 4.43346 4.46479 4.56061 4.57623 4.78211 4.79357 4.90506 4.94599 4.98033 5.04763 5.06472 5.17011 5.22898 5.28809 5.37895 5.49027 5.50316 5.62949 5.75887 5.88261 6.04878 6.56338 6.79627 7.04356 7.25604 8.78779 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.006271 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.698061 B = 4463.870265 C = 5352.387033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.120 3.880 4 H 0.113 0.887 5 C -0.151 4.151 6 N -0.255 5.255 7 N -0.273 5.273 8 C -0.002 4.002 9 C -0.156 4.156 10 C -0.054 4.054 11 C 0.525 3.475 12 O -0.525 6.525 13 O -0.353 6.353 14 C 0.227 3.773 15 H 0.008 0.992 16 C -0.544 4.544 17 H 0.070 0.930 18 C 0.020 3.980 19 N -0.914 5.914 20 Si 0.978 3.022 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.272 1.272 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.176 0.824 36 H 0.270 0.730 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -9.772 11.747 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.021 3.979 4 H 0.130 0.870 5 C -0.209 4.209 6 N -0.046 5.046 7 N -0.108 5.108 8 C -0.176 4.176 9 C -0.185 4.185 10 C -0.179 4.179 11 C 0.369 3.631 12 O -0.414 6.414 13 O -0.270 6.270 14 C 0.174 3.826 15 H 0.026 0.974 16 C -0.582 4.582 17 H 0.088 0.912 18 C -0.180 4.180 19 N -0.552 5.552 20 Si 0.801 3.199 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.197 1.197 24 C -0.167 4.167 25 C -0.189 4.189 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.246 0.754 35 H 0.193 0.807 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.978 -9.982 12.106 15.815 hybrid contribution 0.080 1.207 -1.214 1.714 sum 2.058 -8.775 10.892 14.138 Atomic orbital electron populations 1.21794 0.92654 1.03344 1.02833 1.21751 0.98107 0.92762 1.02885 1.22362 0.72117 1.00602 1.02858 0.86975 1.22112 1.03955 0.99890 0.94894 1.46356 1.08154 1.35827 1.14239 1.73059 1.02198 1.17506 1.17995 1.24216 0.95082 1.02119 0.96176 1.22495 0.93852 1.02577 0.99572 1.21003 0.93766 1.09146 0.94029 1.20118 0.82149 0.77010 0.83817 1.90811 1.60630 1.47350 1.42628 1.86502 1.21874 1.69374 1.49209 1.20491 0.93601 0.88866 0.79647 0.97412 1.21297 1.06292 1.30966 0.99606 0.91225 1.25761 1.01572 0.96353 0.94360 1.70018 1.40758 1.39934 1.04483 0.85208 0.77959 0.77774 0.78952 1.18476 1.20485 1.19741 1.21874 0.96498 0.97971 1.00308 1.21724 0.97443 0.99747 0.99942 0.90448 0.90567 0.93220 0.89669 0.92915 0.90280 0.93366 0.88036 0.75363 0.80678 0.92032 0.93374 0.89272 0.91920 0.94375 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.67 71.98 0.70 -2.33 16 2 C -0.12 -2.82 5.58 30.59 0.17 -2.65 16 3 C 0.12 3.51 3.04 44.99 0.14 3.65 16 4 H 0.11 3.98 5.07 -2.39 -0.01 3.97 16 5 C -0.15 -3.66 9.13 71.98 0.66 -3.00 16 6 N -0.25 -8.13 3.09 -314.33 -0.97 -9.10 16 7 N -0.27 -7.71 11.57 -57.16 -0.66 -8.37 16 8 C 0.00 -0.04 12.03 85.17 1.02 0.99 16 9 C -0.16 -4.58 10.85 22.67 0.25 -4.33 16 10 C -0.05 -1.97 6.96 40.75 0.28 -1.69 16 11 C 0.52 23.21 6.39 70.12 0.45 23.65 16 12 O -0.53 -25.51 14.10 19.67 0.28 -25.24 16 13 O -0.35 -16.59 6.94 -57.19 -0.40 -16.99 16 14 C 0.23 12.02 2.25 29.85 0.07 12.09 16 15 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 16 C -0.54 -29.60 8.90 25.60 0.23 -29.38 16 17 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 18 C 0.02 1.04 5.29 84.66 0.45 1.49 16 19 N -0.91 -51.13 11.29 21.45 0.24 -50.89 16 20 Si 0.98 41.54 29.54 68.60 2.03 43.57 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 C -0.13 -6.34 5.49 30.59 0.17 -6.17 16 25 C -0.13 -5.77 8.56 71.98 0.62 -5.16 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.31 6.57 -2.39 -0.02 1.29 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 2.02 6.56 -2.39 -0.02 2.01 16 34 H 0.23 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 4.80 5.95 -2.39 -0.01 4.79 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.04 1.77 7.79 -2.39 -0.02 1.75 16 41 H 0.03 1.36 6.06 -2.39 -0.01 1.35 16 Total: -1.00 -64.33 334.53 6.72 -57.60 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.02 Total: 22.27 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.19 Total: -12.85 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -1.39 Total: -68.36 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.12 Total: -42.23 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -64.33 6.72 -57.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343502940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.294 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds