Wall clock time and date at job start Tue Mar 31 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47012 * 179.97438 * 10 8 7 12 12 C 1.41386 * 126.58021 * 90.00145 * 11 10 8 13 13 C 1.34515 * 106.83867 * 179.97438 * 12 11 10 14 14 O 1.34301 * 108.42396 * 0.02562 * 13 12 11 15 15 C 1.34304 * 109.47388 * 359.76573 * 14 13 12 16 16 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 4 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 4 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 4 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 26 26 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 27 27 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 29 29 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 31 31 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 32 32 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 33 33 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 34 34 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 35 35 H 1.08992 * 109.47087 * 299.99808 * 10 8 7 36 36 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 37 37 H 1.07998 * 126.57505 * 359.92975 * 12 11 10 38 38 H 1.08003 * 125.78309 * 179.97438 * 13 12 11 39 39 H 1.07998 * 125.78310 * 180.24067 * 15 14 13 40 40 H 0.97001 * 120.00384 * 265.00562 * 16 4 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0447 -4.7515 1.8270 10 6 2.4072 -4.9302 3.7457 11 6 1.9047 -6.3509 3.7457 12 6 2.5003 -7.4553 3.0942 13 6 1.7277 -8.5250 3.3554 14 8 0.7013 -8.1292 4.1258 15 6 0.8061 -6.8126 4.3696 16 7 3.5050 -0.7218 1.2490 17 6 4.1901 0.3552 1.7447 18 1 3.6505 1.2032 2.1400 19 6 5.5782 0.3572 1.7392 20 7 6.2359 -0.6760 1.2570 21 14 6.5129 1.8261 2.4161 22 1 6.7664 1.6263 3.8656 23 1 7.8074 1.9613 1.7012 24 1 5.7078 3.0583 2.2196 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 0.4436 -2.1650 1.3388 33 1 1.8183 -2.6511 0.3179 34 1 2.7231 -2.4351 2.9844 35 1 3.4934 -4.9286 3.6559 36 1 2.1189 -4.4431 4.6772 37 1 3.4021 -7.4423 2.5001 38 1 1.9027 -9.5313 3.0044 39 1 0.1230 -6.2241 4.9640 40 1 3.9897 -1.4834 0.8939 41 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482523180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:14 Heat of formation + Delta-G solvation = -24.589458 kcal Electronic energy + Delta-G solvation = -21856.635330 eV Core-core repulsion = 18545.213320 eV Total energy + Delta-G solvation = -3311.422010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.49284 -39.29209 -37.24022 -33.95678 -33.72069 -33.13346 -30.64600 -30.21124 -28.56645 -27.11795 -26.03859 -23.72985 -22.00423 -21.55526 -20.72571 -19.90633 -19.20567 -17.58407 -17.22731 -16.58259 -15.71297 -15.59041 -15.30796 -14.88512 -14.58609 -14.00283 -13.61623 -13.56589 -13.41513 -12.98447 -12.74718 -12.66775 -12.34952 -12.14562 -12.02874 -11.63550 -11.43878 -11.03671 -10.96668 -10.82506 -10.64612 -10.31278 -10.11085 -9.96336 -9.83576 -9.55970 -9.36771 -8.93725 -8.56453 -8.48113 -7.04994 -5.84291 -3.13436 1.81661 2.61090 3.01393 3.17310 3.37360 3.44027 3.45326 3.76190 4.51878 4.79336 4.83308 5.05286 5.27485 5.33789 5.41699 5.45017 5.53732 5.60916 5.63119 5.73839 5.76646 5.91811 6.01249 6.05998 6.17924 6.20011 6.24543 6.37283 6.45361 6.52552 6.54453 6.62862 6.68959 6.96600 7.07161 7.14183 7.28952 7.64402 7.99523 8.33176 8.64325 9.45174 10.00175 10.36185 11.37549 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.004141 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.354376 B = 6760.614147 C = 8008.530521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.115 3.885 7 N -0.714 5.714 8 C 0.510 3.490 9 O -0.548 6.548 10 C -0.074 4.074 11 C -0.154 4.154 12 C -0.196 4.196 13 C -0.050 4.050 14 O -0.180 6.180 15 C -0.034 4.034 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.146 0.854 38 H 0.200 0.800 39 H 0.199 0.801 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 -8.568 4.869 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.010 4.010 7 N -0.366 5.366 8 C 0.296 3.704 9 O -0.426 6.426 10 C -0.114 4.114 11 C -0.156 4.156 12 C -0.216 4.216 13 C -0.117 4.117 14 O -0.076 6.076 15 C -0.101 4.101 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.164 0.836 38 H 0.216 0.784 39 H 0.215 0.785 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.148 -8.983 4.511 14.284 hybrid contribution 1.291 1.015 0.238 1.659 sum -8.857 -7.969 4.749 12.825 Atomic orbital electron populations 1.21939 0.96885 1.00947 1.00900 1.21731 0.93527 0.97783 1.00102 1.21822 1.04221 0.94639 0.98978 1.20544 0.86357 0.91204 0.95929 0.92912 1.21702 0.97170 0.93141 0.88974 1.45997 1.48703 1.10909 1.30974 1.20483 0.81597 0.81983 0.86362 1.90672 1.36542 1.67867 1.47553 1.20012 1.02410 0.90816 0.98162 1.19844 0.97879 0.95393 1.02503 1.21718 1.02984 0.92259 1.04590 1.23905 0.88657 1.00278 0.98829 1.84032 1.43296 1.24651 1.55577 1.23742 1.00034 0.81658 1.04687 1.42470 0.98757 1.21061 1.73986 1.19202 0.88775 0.96314 1.32495 0.90923 1.24724 0.96466 0.97700 1.01786 1.69663 1.06925 1.29856 1.51305 0.86269 0.79616 0.82341 0.78430 1.21769 1.21883 1.20750 0.93214 0.93584 0.93055 0.91932 0.89485 0.95014 0.94083 0.91761 0.92091 0.75393 0.87699 0.88268 0.83589 0.78355 0.78455 0.78098 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.84 37.16 0.33 -1.77 16 2 C -0.11 -1.86 2.69 -90.62 -0.24 -2.11 16 3 C -0.14 -2.49 8.26 37.16 0.31 -2.19 16 4 C 0.17 3.08 2.18 -67.93 -0.15 2.93 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.94 4.73 -4.04 -0.02 1.92 16 7 N -0.71 -11.59 5.39 -60.29 -0.32 -11.91 16 8 C 0.51 8.31 7.82 -10.99 -0.09 8.22 16 9 O -0.55 -10.82 16.03 5.56 0.09 -10.73 16 10 C -0.07 -0.95 6.22 -29.04 -0.18 -1.13 16 11 C -0.15 -2.07 4.66 -104.74 -0.49 -2.56 16 12 C -0.20 -2.53 10.87 -39.70 -0.43 -2.96 16 13 C -0.05 -0.56 12.09 29.42 0.36 -0.20 16 14 O -0.18 -2.25 10.65 5.71 0.06 -2.19 16 15 C -0.03 -0.41 12.01 29.42 0.35 -0.06 16 16 N -0.72 -16.07 4.44 -53.43 -0.24 -16.31 16 17 C -0.24 -5.88 7.55 -15.06 -0.11 -5.99 16 18 H 0.07 1.77 7.38 -52.49 -0.39 1.38 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.33 13.06 55.49 0.72 -25.60 16 21 Si 0.90 21.16 29.55 -169.99 -5.02 16.13 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.69 6.54 -51.93 -0.34 0.35 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.03 6.71 -51.93 -0.35 0.69 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.41 6.61 8.14 -40.82 -0.33 6.28 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.20 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.39 9.46 7.80 -40.82 -0.32 9.14 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -30.57 342.13 -6.26 -36.83 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.24 Total: 14.89 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.46 Total: -6.25 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.16 Total: -53.82 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.15 Total: -12.92 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.57 -6.26 -36.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482523180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.237 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds