Wall clock time and date at job start Tue Mar 31 2020 01:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47012 * 179.97438 * 10 8 7 12 12 C 1.41386 * 126.58021 * 90.00145 * 11 10 8 13 13 C 1.34515 * 106.83867 * 179.97438 * 12 11 10 14 14 O 1.34301 * 108.42396 * 0.02562 * 13 12 11 15 15 C 1.34304 * 109.47388 * 359.76573 * 14 13 12 16 16 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 4 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 4 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 4 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 26 26 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 27 27 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 29 29 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 31 31 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 32 32 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 33 33 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 34 34 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 35 35 H 1.08992 * 109.47087 * 299.99808 * 10 8 7 36 36 H 1.08999 * 109.46766 * 59.99867 * 10 8 7 37 37 H 1.07998 * 126.57505 * 359.92975 * 12 11 10 38 38 H 1.08003 * 125.78309 * 179.97438 * 13 12 11 39 39 H 1.07998 * 125.78310 * 180.24067 * 15 14 13 40 40 H 0.97001 * 120.00384 * 265.00562 * 16 4 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0447 -4.7515 1.8270 10 6 2.4072 -4.9302 3.7457 11 6 1.9047 -6.3509 3.7457 12 6 2.5003 -7.4553 3.0942 13 6 1.7277 -8.5250 3.3554 14 8 0.7013 -8.1292 4.1258 15 6 0.8061 -6.8126 4.3696 16 7 3.5050 -0.7218 1.2490 17 6 4.1901 0.3552 1.7447 18 1 3.6505 1.2032 2.1400 19 6 5.5782 0.3572 1.7392 20 7 6.2359 -0.6760 1.2570 21 14 6.5129 1.8261 2.4161 22 1 6.7664 1.6263 3.8656 23 1 7.8074 1.9613 1.7012 24 1 5.7078 3.0583 2.2196 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 0.4436 -2.1650 1.3388 33 1 1.8183 -2.6511 0.3179 34 1 2.7231 -2.4351 2.9844 35 1 3.4934 -4.9286 3.6559 36 1 2.1189 -4.4431 4.6772 37 1 3.4021 -7.4423 2.5001 38 1 1.9027 -9.5313 3.0044 39 1 0.1230 -6.2241 4.9640 40 1 3.9897 -1.4834 0.8939 41 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482523180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:13 Heat of formation + Delta-G solvation = -44.682391 kcal Electronic energy + Delta-G solvation = -21857.506625 eV Core-core repulsion = 18545.213320 eV Total energy + Delta-G solvation = -3312.293305 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.40804 -40.63724 -38.73825 -35.22709 -34.90329 -34.86767 -32.21158 -31.38390 -29.86970 -28.32642 -27.40241 -25.50445 -23.47051 -22.46223 -21.89949 -21.11771 -20.57475 -19.19905 -18.39698 -17.87848 -17.02844 -16.79351 -16.67758 -16.29768 -15.67744 -15.50156 -15.18564 -14.94569 -14.82992 -14.36280 -13.99018 -13.67402 -13.60350 -13.45548 -13.28500 -12.90117 -12.84265 -12.69887 -12.46985 -12.35979 -12.26638 -12.00440 -11.73985 -11.43828 -11.27363 -11.04876 -10.81323 -10.48347 -9.94543 -9.39536 -8.94245 -7.86138 -5.13092 0.91374 1.51273 1.53168 1.59674 1.62717 1.73218 2.32702 2.51852 2.61782 3.47447 3.83093 3.88009 3.95777 3.98174 4.10013 4.20604 4.31467 4.34338 4.47334 4.57286 4.66124 4.66818 4.78765 4.83601 4.93431 4.99613 5.08483 5.14449 5.16331 5.27649 5.33360 5.34818 5.57258 5.59955 5.63480 5.66306 5.78215 6.22645 6.34097 6.67983 7.33994 7.42208 8.13547 8.38816 9.36834 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017287 B = 0.004141 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.354376 B = 6760.614147 C = 8008.530521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.173 3.827 5 H 0.059 0.941 6 C 0.124 3.876 7 N -0.712 5.712 8 C 0.509 3.491 9 O -0.585 6.585 10 C -0.066 4.066 11 C -0.181 4.181 12 C -0.228 4.228 13 C -0.043 4.043 14 O -0.188 6.188 15 C -0.036 4.036 16 N -0.727 5.727 17 C -0.214 4.214 18 H 0.080 0.920 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.958 3.042 22 H -0.289 1.289 23 H -0.306 1.306 24 H -0.272 1.272 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.411 0.589 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.235 0.765 39 H 0.226 0.774 40 H 0.372 0.628 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 -8.257 5.812 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.001 4.001 7 N -0.364 5.364 8 C 0.297 3.703 9 O -0.465 6.465 10 C -0.106 4.106 11 C -0.183 4.183 12 C -0.247 4.247 13 C -0.109 4.109 14 O -0.084 6.084 15 C -0.104 4.104 16 N -0.367 5.367 17 C -0.346 4.346 18 H 0.098 0.902 19 C -0.263 4.263 20 N -0.620 5.620 21 Si 0.789 3.211 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.197 1.197 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.248 0.752 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.251 0.749 39 H 0.242 0.758 40 H 0.204 0.796 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.899 -8.642 5.473 15.691 hybrid contribution 1.723 0.901 -0.095 1.947 sum -10.175 -7.740 5.378 13.870 Atomic orbital electron populations 1.21845 0.93983 1.01789 1.02181 1.21635 0.95901 0.96818 0.98538 1.21734 1.01682 0.95489 1.00296 1.20676 0.83931 0.92260 0.96694 0.92351 1.21561 0.97876 0.92077 0.88600 1.46006 1.48572 1.11155 1.30640 1.21077 0.80835 0.81658 0.86716 1.90650 1.38321 1.68475 1.49073 1.20008 1.02281 0.90519 0.97753 1.20078 0.98889 0.95699 1.03588 1.21978 1.03888 0.93119 1.05723 1.24581 0.87485 1.01417 0.97444 1.84047 1.43670 1.24914 1.55752 1.24281 0.99985 0.81688 1.04401 1.42582 1.00507 1.19960 1.73639 1.19478 0.88791 0.96456 1.29875 0.90248 1.25338 0.97561 0.99840 1.03547 1.69808 1.06366 1.31777 1.54000 0.85366 0.77937 0.80305 0.77526 1.21635 1.23320 1.19696 0.92093 0.92171 0.92464 0.93396 0.93205 0.93139 0.93360 0.90295 0.93921 0.75224 0.87315 0.85312 0.83499 0.74863 0.75817 0.79618 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.84 71.98 0.64 -2.91 16 2 C -0.11 -3.49 2.69 -10.79 -0.03 -3.52 16 3 C -0.13 -4.60 8.26 71.98 0.59 -4.00 16 4 C 0.17 6.08 2.18 44.99 0.10 6.18 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 4.08 4.73 86.38 0.41 4.49 16 7 N -0.71 -22.60 5.39 -463.06 -2.49 -25.09 16 8 C 0.51 16.25 7.82 87.66 0.69 16.93 16 9 O -0.58 -22.88 16.03 -3.03 -0.05 -22.93 16 10 C -0.07 -1.61 6.22 29.10 0.18 -1.43 16 11 C -0.18 -4.67 4.66 -19.94 -0.09 -4.77 16 12 C -0.23 -5.76 10.87 22.19 0.24 -5.52 16 13 C -0.04 -0.90 12.09 66.97 0.81 -0.09 16 14 O -0.19 -4.42 10.65 -2.47 -0.03 -4.45 16 15 C -0.04 -0.83 12.01 66.97 0.80 -0.02 16 16 N -0.73 -32.36 4.44 -322.94 -1.44 -33.80 16 17 C -0.21 -10.54 7.55 84.03 0.63 -9.91 16 18 H 0.08 3.76 7.38 -2.91 -0.02 3.74 16 19 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 20 N -0.97 -56.00 13.06 21.65 0.28 -55.72 16 21 Si 0.96 43.74 29.55 68.60 2.03 45.76 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.39 6.54 -2.39 -0.02 1.37 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 2.07 5.99 -2.39 -0.01 2.06 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.40 6.71 -2.39 -0.02 2.38 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 12.93 8.14 -92.71 -0.75 12.18 16 35 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.24 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.23 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.37 18.58 7.80 -92.71 -0.72 17.86 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -65.96 342.13 3.30 -62.65 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.44 Total: 41.43 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.44 Total: -7.85 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -3.65 Total: -114.61 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.07 Total: -27.38 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.96 3.30 -62.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482523180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.969 kcal (2) G-P(sol) polarization free energy of solvation -65.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds