Wall clock time and date at job start Tue Mar 31 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47397 * 2 1 4 4 H 1.08997 * 109.46416 * 54.99404 * 3 2 1 5 5 C 1.52996 * 109.46923 * 174.99715 * 3 2 1 6 6 N 1.46500 * 109.46700 * 174.99737 * 5 3 2 7 7 C 1.34777 * 120.00196 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99473 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00188 * 180.02562 * 7 6 5 10 10 H 1.08997 * 109.47226 * 60.00695 * 9 7 6 11 11 C 1.53001 * 109.47240 * 300.00184 * 9 7 6 12 12 C 1.50706 * 109.47142 * 179.97438 * 9 7 6 13 13 C 1.34512 * 125.79026 * 239.71863 * 12 9 7 14 14 C 1.41386 * 106.83660 * 179.88925 * 13 12 9 15 15 C 1.34512 * 106.84135 * 0.37229 * 14 13 12 16 16 O 1.34305 * 108.42320 * 359.77173 * 15 14 13 17 17 N 1.46501 * 109.46885 * 294.99662 * 3 2 1 18 18 C 1.36942 * 119.99808 * 84.99514 * 17 3 2 19 19 H 1.08005 * 119.99895 * 0.02562 * 18 17 3 20 20 C 1.38808 * 119.99889 * 179.97438 * 18 17 3 21 21 N 1.31617 * 120.00151 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00091 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46967 * 89.99508 * 22 20 18 24 24 H 1.48496 * 109.46870 * 209.99532 * 22 20 18 25 25 H 1.48494 * 109.46908 * 329.99867 * 22 20 18 26 26 H 1.08999 * 109.47244 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47663 * 300.00504 * 1 2 3 28 28 H 1.09005 * 109.47184 * 60.00063 * 1 2 3 29 29 H 1.09003 * 109.47515 * 239.99426 * 2 1 3 30 30 H 1.09001 * 109.46700 * 119.99955 * 2 1 3 31 31 H 1.09001 * 109.47386 * 55.00100 * 5 3 2 32 32 H 1.08994 * 109.47327 * 294.99518 * 5 3 2 33 33 H 0.96998 * 120.00369 * 0.02562 * 6 5 3 34 34 H 1.09002 * 109.46875 * 60.00453 * 11 9 7 35 35 H 1.09001 * 109.47117 * 180.02562 * 11 9 7 36 36 H 1.09001 * 109.47185 * 299.99933 * 11 9 7 37 37 H 1.07998 * 126.57888 * 0.02562 * 13 12 9 38 38 H 1.07998 * 126.57496 * 180.11817 * 14 13 12 39 39 H 1.07999 * 125.78629 * 179.74589 * 15 14 13 40 40 H 0.96991 * 120.00392 * 265.00079 * 17 3 2 41 41 H 0.96996 * 120.00217 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4442 0.1258 6 7 4.0631 2.8167 0.0060 7 6 5.3857 3.0630 0.0869 8 8 6.1634 2.1482 0.2584 9 6 5.8981 4.4748 -0.0358 10 1 5.4674 5.0878 0.7558 11 6 5.4985 5.0459 -1.3978 12 6 7.4000 4.4767 0.0892 13 6 8.1108 5.1335 1.0235 14 6 9.4740 4.8571 0.7702 15 6 9.5151 4.0547 -0.3086 16 8 8.2560 3.8276 -0.7169 17 7 1.6526 2.0975 -1.2519 18 6 0.4157 2.6734 -1.3689 19 1 -0.2740 2.6452 -0.5382 20 6 0.0487 3.2944 -2.5549 21 7 -1.1399 3.8484 -2.6673 22 14 1.2418 3.3439 -3.9914 23 1 1.0384 2.1461 -4.8452 24 1 1.0004 4.5702 -4.7933 25 1 2.6350 3.3546 -3.4776 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.9954 0.8310 -0.6658 32 1 3.8498 1.0377 1.0961 33 1 3.4411 3.5483 -0.1309 34 1 4.4122 5.0446 -1.4877 35 1 5.8696 6.0670 -1.4867 36 1 5.9294 4.4329 -2.1895 37 1 7.7157 5.7514 1.8163 38 1 10.3202 5.2237 1.3324 39 1 10.4091 3.6604 -0.7687 40 1 2.2720 2.1231 -1.9978 41 1 -1.3965 4.2820 -3.4961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567976741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:28 Heat of formation + Delta-G solvation = -19.852600 kcal Electronic energy + Delta-G solvation = -22206.268509 eV Core-core repulsion = 18895.051905 eV Total energy + Delta-G solvation = -3311.216604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.59013 -39.58884 -36.92807 -34.29741 -33.70900 -32.85387 -32.33849 -30.30195 -28.83835 -27.93507 -24.79589 -23.42684 -22.43761 -21.78033 -20.90116 -20.26408 -19.60929 -17.96154 -17.33624 -16.75741 -15.83274 -15.76610 -15.56880 -14.85244 -14.39073 -14.11681 -13.93208 -13.39259 -13.20299 -12.92042 -12.88475 -12.82563 -12.68655 -12.55766 -12.26187 -11.73132 -11.64215 -11.53863 -11.17361 -11.02126 -10.73056 -10.43257 -10.33117 -10.03456 -9.93171 -9.64423 -9.52657 -9.02086 -8.79322 -8.48616 -7.38555 -5.85336 -3.21574 1.72223 2.56958 2.76044 2.97562 3.29712 3.34934 3.40196 3.45022 4.44077 4.50985 4.77705 4.90429 4.94363 5.05126 5.16348 5.17776 5.27788 5.41145 5.58214 5.64601 5.75303 5.77826 5.85258 5.86498 5.88696 5.98997 6.03842 6.14378 6.25441 6.44806 6.45893 6.50541 6.56516 6.75829 6.91633 7.15286 7.26682 7.75187 7.90557 8.32809 8.39964 9.10918 9.83256 10.02783 11.32258 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.004622 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.324541 B = 6056.934680 C = 6967.279866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.112 3.888 6 N -0.713 5.713 7 C 0.513 3.487 8 O -0.539 6.539 9 C -0.031 4.031 10 H 0.125 0.875 11 C -0.148 4.148 12 C 0.021 3.979 13 C -0.212 4.212 14 C -0.217 4.217 15 C -0.042 4.042 16 O -0.160 6.160 17 N -0.747 5.747 18 C -0.243 4.243 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.930 5.930 22 Si 0.879 3.121 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.276 1.276 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.410 0.590 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.200 0.800 40 H 0.362 0.638 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.051 1.630 6.357 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.013 4.013 6 N -0.366 5.366 7 C 0.297 3.703 8 O -0.417 6.417 9 C -0.053 4.053 10 H 0.143 0.857 11 C -0.206 4.206 12 C -0.030 4.030 13 C -0.232 4.232 14 C -0.236 4.236 15 C -0.110 4.110 16 O -0.054 6.054 17 N -0.390 5.390 18 C -0.373 4.373 19 H 0.113 0.887 20 C -0.188 4.188 21 N -0.578 5.578 22 Si 0.709 3.291 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.203 1.203 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.247 0.753 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.216 0.784 40 H 0.195 0.805 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.253 0.884 6.271 17.443 hybrid contribution 0.624 0.461 -1.018 1.280 sum 16.877 1.345 5.253 17.727 Atomic orbital electron populations 1.21779 0.95183 0.99728 1.03776 1.22037 0.97357 0.97838 1.00124 1.20548 0.89787 0.93012 0.90774 0.91917 1.21735 0.95527 0.82524 1.01466 1.45971 1.06897 1.10924 1.72763 1.20311 0.82695 0.90342 0.76904 1.90708 1.55980 1.46052 1.48923 1.19925 0.87036 0.96077 1.02234 0.85710 1.21846 1.03077 1.01633 0.94019 1.21614 0.91222 0.97043 0.93101 1.21515 0.93272 1.06223 1.02143 1.21745 0.97446 1.04039 1.00341 1.23998 0.85708 1.02519 0.98768 1.84045 1.15646 1.57501 1.48241 1.42835 1.16819 1.67677 1.11719 1.19057 0.90619 1.27686 0.99889 0.88739 1.24648 0.96348 1.00306 0.97480 1.69686 1.19308 1.42048 1.26736 0.86655 0.81144 0.77374 0.83927 1.21199 1.21836 1.20259 0.94855 0.93869 0.89352 0.92667 0.93551 0.91875 0.91424 0.75298 0.90295 0.90931 0.91540 0.83554 0.83637 0.78376 0.80507 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.16 0.34 -2.26 16 2 C -0.13 -2.17 5.61 -26.73 -0.15 -2.32 16 3 C 0.17 2.90 2.59 -67.93 -0.18 2.72 16 4 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 5 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 6 N -0.71 -10.89 5.28 -60.30 -0.32 -11.21 16 7 C 0.51 8.10 7.15 -10.99 -0.08 8.02 16 8 O -0.54 -10.43 15.80 -1.24 -0.02 -10.45 16 9 C -0.03 -0.40 3.13 -92.92 -0.29 -0.69 16 10 H 0.13 1.23 8.10 -51.93 -0.42 0.81 16 11 C -0.15 -1.78 9.07 37.16 0.34 -1.44 16 12 C 0.02 0.30 5.20 -35.62 -0.19 0.11 16 13 C -0.21 -2.57 10.78 -39.70 -0.43 -3.00 16 14 C -0.22 -2.41 10.91 -39.70 -0.43 -2.84 16 15 C -0.04 -0.48 12.09 29.42 0.36 -0.13 16 16 O -0.16 -2.37 10.35 -1.10 -0.01 -2.38 16 17 N -0.75 -15.56 4.31 -53.42 -0.23 -15.79 16 18 C -0.24 -6.09 8.23 -15.06 -0.12 -6.21 16 19 H 0.09 2.56 7.55 -52.48 -0.40 2.16 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -27.46 13.97 55.49 0.78 -26.69 16 22 Si 0.88 20.82 27.74 -169.99 -4.71 16.10 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.09 6.52 56.52 0.37 -5.72 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.41 6.09 7.56 -40.82 -0.31 5.78 16 34 H 0.08 0.96 7.56 -51.93 -0.39 0.57 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.20 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.36 7.70 5.66 -40.82 -0.23 7.47 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -31.66 340.98 -6.63 -38.29 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.30 Total: 13.15 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.95 Total: -6.16 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.23 Total: -53.69 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.03 Total: -12.83 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.66 -6.63 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567976741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.432 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds