Wall clock time and date at job start Tue Mar 31 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 N 1.46498 * 109.46860 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00059 * 264.11665 * 4 3 2 6 6 H 1.07996 * 120.00184 * 188.01961 * 5 4 3 7 7 C 1.38815 * 119.99763 * 8.01323 * 5 4 3 8 8 N 1.31611 * 120.00045 * 25.64993 * 7 5 4 9 9 Si 1.86801 * 119.99894 * 205.64784 * 7 5 4 10 10 H 1.48504 * 109.46932 * 84.99053 * 9 7 5 11 11 H 1.48497 * 109.47304 * 204.98511 * 9 7 5 12 12 H 1.48502 * 109.47400 * 324.99180 * 9 7 5 13 13 C 1.46496 * 120.00149 * 84.11682 * 4 3 2 14 14 C 1.53001 * 109.47216 * 269.99616 * 13 4 3 15 15 N 1.46504 * 109.47439 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00173 * 180.02562 * 15 14 13 17 17 O 1.21614 * 120.00096 * 359.97438 * 16 15 14 18 18 C 1.47381 * 120.00225 * 179.97438 * 16 15 14 19 19 C 1.47023 * 127.18638 * 0.29299 * 18 16 15 20 20 C 1.34181 * 105.95126 * 180.09164 * 19 18 16 21 21 O 1.34219 * 109.12397 * 359.65823 * 20 19 18 22 22 C 1.33655 * 110.90828 * 0.22752 * 21 20 19 23 23 C 1.50700 * 125.80278 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46473 * 299.99519 * 1 2 3 26 26 H 1.09000 * 109.47334 * 59.99593 * 1 2 3 27 27 H 1.09007 * 109.46473 * 240.00480 * 2 1 3 28 28 H 1.09000 * 109.47334 * 120.00407 * 2 1 3 29 29 H 1.08997 * 109.46913 * 60.00395 * 3 2 1 30 30 H 1.09000 * 109.47389 * 300.00374 * 3 2 1 31 31 H 0.96999 * 120.00369 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47539 * 150.00029 * 13 4 3 33 33 H 1.08998 * 109.47272 * 29.99741 * 13 4 3 34 34 H 1.09006 * 109.46973 * 60.00091 * 14 13 4 35 35 H 1.08998 * 109.47102 * 300.00229 * 14 13 4 36 36 H 0.97004 * 119.99477 * 359.97438 * 15 14 13 37 37 H 1.07993 * 127.02932 * 0.02562 * 19 18 16 38 38 H 1.07997 * 125.43971 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.46895 * 0.03246 * 23 22 21 40 40 H 1.08999 * 109.46873 * 120.02732 * 23 22 21 41 41 H 1.08992 * 109.47145 * 240.02601 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.5638 1.1788 6 1 5.2622 1.6940 1.1695 7 6 3.5068 1.5196 2.3862 8 7 2.3566 0.8850 2.4685 9 14 4.2195 2.3606 3.8942 10 1 3.8326 3.7944 3.8906 11 1 3.6924 1.7089 5.1200 12 1 5.7000 2.2474 3.8709 13 6 4.2370 1.3126 -1.2629 14 6 4.4919 -0.1676 -1.5547 15 7 5.2234 -0.2975 -2.8174 16 6 5.5596 -1.5183 -3.2789 17 8 5.2562 -2.5121 -2.6469 18 6 6.2950 -1.6491 -4.5494 19 6 6.7436 -0.5625 -5.4324 20 6 7.3637 -1.1572 -6.4631 21 8 7.3385 -2.4871 -6.2834 22 6 6.7065 -2.8032 -5.1490 23 6 6.4854 -4.1977 -4.6221 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.8792 0.8538 3.3123 32 1 5.1895 1.8370 -1.1863 33 1 3.6476 1.7459 -2.0710 34 1 3.5394 -0.6921 -1.6314 35 1 5.0813 -0.6009 -0.7467 36 1 5.4650 0.4951 -3.3217 37 1 6.6020 0.4976 -5.2827 38 1 7.8157 -0.6470 -7.3007 39 1 6.9231 -4.9200 -5.3112 40 1 6.9576 -4.2959 -3.6447 41 1 5.4158 -4.3858 -4.5295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663649457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:25 Heat of formation + Delta-G solvation = -4.419822 kcal Electronic energy + Delta-G solvation = -21871.187385 eV Core-core repulsion = 18560.639996 eV Total energy + Delta-G solvation = -3310.547389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65486 -39.05314 -36.54269 -34.36444 -33.08765 -32.01659 -31.89285 -31.25203 -28.18588 -26.75322 -25.49424 -23.95027 -22.67357 -21.19373 -20.64530 -20.00739 -19.52030 -17.89603 -16.82433 -16.43624 -15.75306 -15.48953 -14.88991 -14.81472 -14.38688 -13.81585 -13.59548 -13.27980 -13.18952 -13.01725 -12.99933 -12.83018 -12.60811 -12.33313 -11.87158 -11.57070 -11.29361 -11.03189 -10.84262 -10.60609 -10.38223 -9.95932 -9.91444 -9.89220 -9.82315 -9.62211 -9.21196 -8.76073 -8.47261 -8.32699 -6.92581 -5.77248 -3.08745 1.35572 1.95307 2.69184 3.40348 3.47156 3.48645 3.57120 3.58500 4.39833 4.51844 4.77324 4.83487 5.15926 5.32358 5.39950 5.48298 5.53890 5.57965 5.69789 5.85769 5.95316 6.04074 6.17094 6.21382 6.25254 6.31064 6.55994 6.69324 6.70439 6.73652 6.87954 6.92725 7.04481 7.21124 7.29569 7.68428 7.80328 7.87178 8.12416 8.34661 8.55393 9.23010 9.84707 10.29093 11.26226 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.003687 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.037375 B = 7592.024137 C = 8010.021118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.256 4.256 6 H 0.074 0.926 7 C 0.001 3.999 8 N -0.891 5.891 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.091 3.909 15 N -0.717 5.717 16 C 0.580 3.420 17 O -0.544 6.544 18 C -0.241 4.241 19 C -0.187 4.187 20 C -0.044 4.044 21 O -0.179 6.179 22 C 0.071 3.929 23 C -0.072 4.072 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.021 0.979 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.003 0.997 31 H 0.252 0.748 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.394 0.606 37 H 0.157 0.843 38 H 0.206 0.794 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -3.082 -16.615 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.312 5.312 5 C -0.385 4.385 6 H 0.092 0.908 7 C -0.196 4.196 8 N -0.536 5.536 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.034 4.034 15 N -0.368 5.368 16 C 0.367 3.633 17 O -0.423 6.423 18 C -0.245 4.245 19 C -0.206 4.206 20 C -0.110 4.110 21 O -0.075 6.075 22 C 0.018 3.982 23 C -0.128 4.128 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.227 0.773 37 H 0.174 0.826 38 H 0.223 0.777 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.197 -3.965 -16.148 17.745 hybrid contribution 0.417 0.994 0.572 1.220 sum 6.614 -2.971 -15.576 17.180 Atomic orbital electron populations 1.21629 0.98587 0.99309 0.99980 1.22230 0.92897 1.00499 1.01397 1.20926 0.81525 0.94523 0.98381 1.44243 1.01919 1.83627 1.01382 1.19273 0.92247 1.43467 0.83503 0.90769 1.24717 0.97570 1.00097 0.97263 1.70160 1.17232 1.41213 1.24960 0.86378 0.78421 0.79895 0.82619 1.21604 1.21959 1.20771 1.20949 0.96350 0.91763 0.89476 1.22732 0.95913 1.01608 0.83184 1.45990 1.58098 1.07315 1.25359 1.17239 0.78761 0.83871 0.83423 1.90780 1.55489 1.37146 1.58936 1.21350 1.10353 0.93057 0.99760 1.22904 1.02861 0.99799 0.95066 1.23810 1.05437 0.79795 1.01961 1.83757 1.60907 1.25603 1.37256 1.22821 0.93646 0.97233 0.84510 1.20457 1.04396 0.86786 1.01195 0.94815 0.92995 0.95104 0.96032 0.88339 0.89210 0.97896 0.93718 0.93233 0.93926 0.91543 0.91465 0.77258 0.82559 0.77708 0.90790 0.88558 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.91 37.16 0.37 -2.31 16 2 C -0.13 -2.98 5.61 -26.73 -0.15 -3.13 16 3 C 0.17 4.04 4.92 -4.04 -0.02 4.02 16 4 N -0.59 -14.20 2.54 -173.24 -0.44 -14.64 16 5 C -0.26 -6.78 9.70 -15.06 -0.15 -6.92 16 6 H 0.07 1.94 7.94 -52.49 -0.42 1.53 16 7 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -24.39 8.62 55.49 0.48 -23.91 16 9 Si 0.90 21.34 29.62 -169.99 -5.04 16.30 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 2.80 5.82 -4.04 -0.02 2.77 16 14 C 0.09 1.77 5.88 -4.04 -0.02 1.75 16 15 N -0.72 -11.43 5.55 -61.39 -0.34 -11.77 16 16 C 0.58 9.87 7.81 -12.54 -0.10 9.77 16 17 O -0.54 -11.07 15.66 5.27 0.08 -10.99 16 18 C -0.24 -3.33 6.31 -103.27 -0.65 -3.99 16 19 C -0.19 -1.96 10.60 -37.45 -0.40 -2.35 16 20 C -0.04 -0.40 12.03 29.30 0.35 -0.05 16 21 O -0.18 -2.00 10.52 7.63 0.08 -1.92 16 22 C 0.07 0.89 7.37 -34.97 -0.26 0.63 16 23 C -0.07 -0.77 9.14 36.01 0.33 -0.44 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.48 5.97 -51.92 -0.31 0.17 16 28 H 0.10 2.60 6.33 -51.93 -0.33 2.27 16 29 H 0.09 2.35 5.85 -51.93 -0.30 2.05 16 30 H 0.00 0.06 7.98 -51.93 -0.41 -0.35 16 31 H 0.25 6.79 8.31 -40.82 -0.34 6.46 16 32 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 33 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 34 H 0.07 1.43 5.92 -51.93 -0.31 1.12 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.39 5.00 7.64 -40.82 -0.31 4.69 16 37 H 0.16 1.24 7.74 -52.49 -0.41 0.84 16 38 H 0.21 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 41 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -30.92 338.42 -7.02 -37.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.14 Total: 4.17 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.80 Total: -0.29 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.30 Total: -50.32 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.16 Total: -12.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.04 Total: 16.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.92 -7.02 -37.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663649457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.523 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds