Wall clock time and date at job start Tue Mar 31 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 N 1.46498 * 109.46860 * 180.02562 * 3 2 1 5 5 C 1.36937 * 120.00059 * 264.11665 * 4 3 2 6 6 H 1.07996 * 120.00184 * 188.01961 * 5 4 3 7 7 C 1.38815 * 119.99763 * 8.01323 * 5 4 3 8 8 N 1.31611 * 120.00045 * 25.64993 * 7 5 4 9 9 Si 1.86801 * 119.99894 * 205.64784 * 7 5 4 10 10 H 1.48504 * 109.46932 * 84.99053 * 9 7 5 11 11 H 1.48497 * 109.47304 * 204.98511 * 9 7 5 12 12 H 1.48502 * 109.47400 * 324.99180 * 9 7 5 13 13 C 1.46496 * 120.00149 * 84.11682 * 4 3 2 14 14 C 1.53001 * 109.47216 * 269.99616 * 13 4 3 15 15 N 1.46504 * 109.47439 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00173 * 180.02562 * 15 14 13 17 17 O 1.21614 * 120.00096 * 359.97438 * 16 15 14 18 18 C 1.47381 * 120.00225 * 179.97438 * 16 15 14 19 19 C 1.47023 * 127.18638 * 0.29299 * 18 16 15 20 20 C 1.34181 * 105.95126 * 180.09164 * 19 18 16 21 21 O 1.34219 * 109.12397 * 359.65823 * 20 19 18 22 22 C 1.33655 * 110.90828 * 0.22752 * 21 20 19 23 23 C 1.50700 * 125.80278 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46473 * 299.99519 * 1 2 3 26 26 H 1.09000 * 109.47334 * 59.99593 * 1 2 3 27 27 H 1.09007 * 109.46473 * 240.00480 * 2 1 3 28 28 H 1.09000 * 109.47334 * 120.00407 * 2 1 3 29 29 H 1.08997 * 109.46913 * 60.00395 * 3 2 1 30 30 H 1.09000 * 109.47389 * 300.00374 * 3 2 1 31 31 H 0.96999 * 120.00369 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47539 * 150.00029 * 13 4 3 33 33 H 1.08998 * 109.47272 * 29.99741 * 13 4 3 34 34 H 1.09006 * 109.46973 * 60.00091 * 14 13 4 35 35 H 1.08998 * 109.47102 * 300.00229 * 14 13 4 36 36 H 0.97004 * 119.99477 * 359.97438 * 15 14 13 37 37 H 1.07993 * 127.02932 * 0.02562 * 19 18 16 38 38 H 1.07997 * 125.43971 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.46895 * 0.03246 * 23 22 21 40 40 H 1.08999 * 109.46873 * 120.02732 * 23 22 21 41 41 H 1.08992 * 109.47145 * 240.02601 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.5638 1.1788 6 1 5.2622 1.6940 1.1695 7 6 3.5068 1.5196 2.3862 8 7 2.3566 0.8850 2.4685 9 14 4.2195 2.3606 3.8942 10 1 3.8326 3.7944 3.8906 11 1 3.6924 1.7089 5.1200 12 1 5.7000 2.2474 3.8709 13 6 4.2370 1.3126 -1.2629 14 6 4.4919 -0.1676 -1.5547 15 7 5.2234 -0.2975 -2.8174 16 6 5.5596 -1.5183 -3.2789 17 8 5.2562 -2.5121 -2.6469 18 6 6.2950 -1.6491 -4.5494 19 6 6.7436 -0.5625 -5.4324 20 6 7.3637 -1.1572 -6.4631 21 8 7.3385 -2.4871 -6.2834 22 6 6.7065 -2.8032 -5.1490 23 6 6.4854 -4.1977 -4.6221 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.8792 0.8538 3.3123 32 1 5.1895 1.8370 -1.1863 33 1 3.6476 1.7459 -2.0710 34 1 3.5394 -0.6921 -1.6314 35 1 5.0813 -0.6009 -0.7467 36 1 5.4650 0.4951 -3.3217 37 1 6.6020 0.4976 -5.2827 38 1 7.8157 -0.6470 -7.3007 39 1 6.9231 -4.9200 -5.3112 40 1 6.9576 -4.2959 -3.6447 41 1 5.4158 -4.3858 -4.5295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663649457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:24 Heat of formation + Delta-G solvation = -23.776168 kcal Electronic energy + Delta-G solvation = -21872.026740 eV Core-core repulsion = 18560.639996 eV Total energy + Delta-G solvation = -3311.386743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.51691 -40.44120 -38.33031 -35.90870 -34.08333 -33.74536 -33.16265 -32.70356 -29.75063 -27.75296 -27.36509 -25.47374 -23.94919 -22.58478 -22.02385 -21.67195 -20.73318 -18.95411 -18.67546 -17.33540 -17.14083 -16.68428 -16.66188 -16.35570 -15.64531 -15.44289 -15.28147 -14.71531 -14.42167 -14.29743 -14.08032 -14.05132 -13.84915 -13.72683 -13.41533 -13.03801 -12.80584 -12.69281 -12.63893 -12.39589 -12.18177 -11.81215 -11.70039 -11.55823 -11.16485 -11.05536 -10.83343 -10.32618 -10.05769 -9.50787 -8.86139 -7.79458 -5.12055 0.33334 1.15616 1.49843 1.52649 1.58913 1.84423 2.26977 2.33386 2.58625 3.28740 3.62706 3.71174 3.86915 3.93092 4.21511 4.31231 4.36887 4.52349 4.59957 4.63841 4.65237 4.69400 4.76431 4.84985 4.88338 4.95948 5.05732 5.13025 5.19553 5.28092 5.39734 5.44976 5.47309 5.53110 5.65651 5.87711 6.04798 6.19422 6.36724 6.60643 7.22089 7.25605 7.92282 8.31668 9.21626 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.003687 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.037375 B = 7592.024137 C = 8010.021118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.175 3.825 4 N -0.607 5.607 5 C -0.266 4.266 6 H 0.072 0.928 7 C -0.045 4.045 8 N -0.909 5.909 9 Si 0.955 3.045 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.278 1.278 13 C 0.146 3.854 14 C 0.113 3.887 15 N -0.705 5.705 16 C 0.576 3.424 17 O -0.588 6.588 18 C -0.270 4.270 19 C -0.198 4.198 20 C -0.027 4.027 21 O -0.180 6.180 22 C 0.065 3.935 23 C -0.072 4.072 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.021 0.979 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.246 0.754 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.413 0.587 37 H 0.181 0.819 38 H 0.253 0.747 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -1.970 -19.171 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.328 5.328 5 C -0.395 4.395 6 H 0.090 0.910 7 C -0.241 4.241 8 N -0.555 5.555 9 Si 0.784 3.216 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.203 1.203 13 C 0.019 3.981 14 C -0.013 4.013 15 N -0.356 5.356 16 C 0.365 3.635 17 O -0.470 6.470 18 C -0.275 4.275 19 C -0.217 4.217 20 C -0.092 4.092 21 O -0.076 6.076 22 C 0.012 3.988 23 C -0.128 4.128 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.250 0.750 37 H 0.198 0.802 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.184 -2.820 -18.752 20.278 hybrid contribution 0.181 0.628 1.257 1.417 sum 7.365 -2.193 -17.495 19.109 Atomic orbital electron populations 1.21529 0.96078 1.00366 1.00658 1.22025 0.95109 0.99629 0.99302 1.20817 0.81558 0.94671 0.97946 1.44425 1.02358 1.83879 1.02139 1.19495 0.92376 1.42992 0.84683 0.90978 1.25351 0.98348 1.00877 0.99545 1.70330 1.18211 1.42025 1.24938 0.85474 0.77858 0.78697 0.79551 1.21380 1.22745 1.20291 1.21063 0.97011 0.91551 0.88490 1.22171 0.94455 1.01043 0.83674 1.45711 1.57554 1.08154 1.24224 1.17745 0.78270 0.83259 0.84223 1.90751 1.57256 1.38501 1.60497 1.21250 1.11691 0.95335 0.99199 1.23190 1.03369 1.00354 0.94756 1.24734 1.03507 0.78661 1.02296 1.83792 1.60387 1.27029 1.36346 1.23039 0.93365 0.97515 0.84879 1.20458 1.03893 0.87104 1.01379 0.93616 0.93925 0.92698 0.96045 0.92395 0.92031 0.95621 0.94420 0.91977 0.91122 0.93770 0.95223 0.75019 0.80163 0.73089 0.87897 0.89679 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 9.91 71.98 0.71 -4.20 16 2 C -0.12 -5.57 5.61 30.59 0.17 -5.39 16 3 C 0.18 8.23 4.92 86.38 0.42 8.65 16 4 N -0.61 -29.17 2.54 -702.02 -1.78 -30.95 16 5 C -0.27 -14.20 9.70 84.03 0.81 -13.39 16 6 H 0.07 3.80 7.94 -2.91 -0.02 3.77 16 7 C -0.05 -2.47 4.89 84.86 0.41 -2.05 16 8 N -0.91 -51.12 8.62 21.65 0.19 -50.93 16 9 Si 0.95 44.53 29.62 68.60 2.03 46.56 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.15 5.56 5.82 86.38 0.50 6.06 16 14 C 0.11 4.47 5.88 86.38 0.51 4.97 16 15 N -0.70 -22.08 5.55 -466.41 -2.59 -24.67 16 16 C 0.58 19.74 7.81 86.65 0.68 20.42 16 17 O -0.59 -24.87 15.66 -4.07 -0.06 -24.93 16 18 C -0.27 -7.20 6.31 -18.99 -0.12 -7.32 16 19 C -0.20 -3.54 10.60 23.65 0.25 -3.29 16 20 C -0.03 -0.38 12.03 66.89 0.80 0.42 16 21 O -0.18 -3.52 10.52 4.40 0.05 -3.47 16 22 C 0.07 1.57 7.37 25.26 0.19 1.76 16 23 C -0.07 -1.53 9.14 71.24 0.65 -0.88 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.02 0.96 5.97 -2.38 -0.01 0.94 16 28 H 0.06 3.16 6.33 -2.39 -0.02 3.14 16 29 H 0.06 3.26 5.85 -2.39 -0.01 3.25 16 30 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 31 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.06 2.21 8.03 -2.38 -0.02 2.19 16 33 H 0.07 2.31 7.95 -2.39 -0.02 2.29 16 34 H 0.04 1.94 5.92 -2.38 -0.01 1.93 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.41 9.67 7.64 -92.70 -0.71 8.96 16 37 H 0.18 2.18 7.74 -2.91 -0.02 2.16 16 38 H 0.25 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 41 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -69.44 338.42 4.15 -65.29 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.32 Total: 17.35 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.00 Total: 5.75 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.18 Total: -106.56 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.02 Total: -28.40 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.44 4.15 -65.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663649457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.514 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds