Wall clock time and date at job start Tue Mar 31 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46855 * 2 1 4 4 N 1.46497 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00018 * 275.31074 * 4 3 2 6 6 H 1.08001 * 119.99729 * 37.57371 * 5 4 3 7 7 C 1.38815 * 119.99763 * 217.58061 * 5 4 3 8 8 N 1.31621 * 120.00062 * 21.42354 * 7 5 4 9 9 Si 1.86800 * 119.99947 * 201.42391 * 7 5 4 10 10 H 1.48503 * 109.47192 * 89.99409 * 9 7 5 11 11 H 1.48499 * 109.47068 * 210.00168 * 9 7 5 12 12 H 1.48504 * 109.46871 * 329.99806 * 9 7 5 13 13 C 1.46503 * 119.99876 * 95.31063 * 4 3 2 14 14 C 1.53003 * 109.47016 * 269.99881 * 13 4 3 15 15 N 1.46495 * 109.47313 * 180.02562 * 14 13 4 16 16 C 1.34777 * 120.00194 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00053 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.46996 * 180.02562 * 18 16 15 20 20 C 1.41382 * 126.58312 * 89.99761 * 19 18 16 21 21 C 1.34522 * 106.83875 * 180.25946 * 20 19 18 22 22 O 1.34301 * 108.41834 * 359.63676 * 21 20 19 23 23 C 1.34299 * 109.47951 * 0.37438 * 22 21 20 24 24 H 1.09008 * 109.46773 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47246 * 299.99544 * 1 2 3 26 26 H 1.08997 * 109.47481 * 60.00240 * 1 2 3 27 27 H 1.09001 * 109.46827 * 239.99805 * 2 1 3 28 28 H 1.08995 * 109.47312 * 120.00281 * 2 1 3 29 29 H 1.08995 * 109.47204 * 60.00081 * 3 2 1 30 30 H 1.09004 * 109.47007 * 299.99771 * 3 2 1 31 31 H 0.97002 * 119.99683 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47113 * 150.00119 * 13 4 3 33 33 H 1.08992 * 109.47595 * 29.99892 * 13 4 3 34 34 H 1.08995 * 109.47380 * 59.99949 * 14 13 4 35 35 H 1.09001 * 109.47084 * 300.00145 * 14 13 4 36 36 H 0.96996 * 119.99953 * 359.97438 * 15 14 13 37 37 H 1.08995 * 109.47218 * 59.99678 * 18 16 15 38 38 H 1.09001 * 109.47027 * 300.00007 * 18 16 15 39 39 H 1.07999 * 126.58028 * 359.97438 * 20 19 18 40 40 H 1.07994 * 125.78275 * 179.77557 * 21 20 19 41 41 H 1.08007 * 125.78884 * 179.79418 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1799 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1240 0.6478 9 14 6.5989 1.4955 2.6565 10 1 7.5686 0.5567 2.0370 11 1 7.3244 2.6768 3.1888 12 1 5.8868 0.8110 3.7654 13 6 4.2369 1.5602 -1.2642 14 6 4.4917 0.1648 -1.8378 15 7 5.2241 0.2824 -3.1011 16 6 5.5614 -0.8257 -3.7902 17 8 5.2580 -1.9202 -3.3646 18 6 6.3143 -0.7048 -5.0900 19 6 6.5654 -2.0791 -5.6548 20 6 5.7223 -2.7952 -6.5354 21 6 6.3242 -3.9732 -6.7794 22 8 7.4842 -4.0051 -6.1034 23 6 7.6343 -2.8604 -5.4172 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 6.4216 3.6258 0.7814 32 1 5.1894 2.0598 -1.0872 33 1 3.6476 2.1422 -1.9727 34 1 3.5393 -0.3348 -2.0148 35 1 5.0811 -0.4172 -1.1293 36 1 5.4664 1.1577 -3.4416 37 1 7.2665 -0.2047 -4.9131 38 1 5.7247 -0.1232 -5.7987 39 1 4.7746 -2.4623 -6.9321 40 1 5.9406 -4.7590 -7.4132 41 1 8.4715 -2.6095 -4.7827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713545073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:38 Heat of formation + Delta-G solvation = -14.372883 kcal Electronic energy + Delta-G solvation = -21646.015049 eV Core-core repulsion = 18335.036063 eV Total energy + Delta-G solvation = -3310.978986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53812 -39.17434 -36.49227 -34.25836 -33.86388 -32.87559 -30.92897 -30.38993 -28.68492 -27.06266 -25.56806 -23.42746 -21.61648 -21.25959 -20.69678 -20.22886 -19.72000 -17.51430 -17.01989 -16.39505 -15.72893 -15.34696 -15.29167 -14.83944 -14.62588 -14.32773 -13.94809 -13.31705 -13.26561 -12.97551 -12.81359 -12.76140 -12.45449 -12.38405 -11.58957 -11.57531 -11.41352 -11.17844 -10.93972 -10.76481 -10.42924 -10.36259 -10.08659 -9.88697 -9.86468 -9.70419 -9.35340 -8.56341 -8.52517 -8.42200 -6.63481 -5.84917 -3.43855 1.77804 2.55330 3.01733 3.13904 3.34418 3.41886 3.44217 3.75664 4.45499 4.73163 4.77908 4.98630 5.21954 5.27532 5.37748 5.46981 5.48688 5.66400 5.68403 5.76496 5.99100 6.02945 6.12215 6.14820 6.23527 6.28157 6.42864 6.46874 6.54732 6.62532 6.66494 6.92045 6.97522 7.03232 7.10002 7.18317 7.53643 7.79115 7.97786 8.46619 8.65492 9.13395 9.75172 10.33077 11.14971 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.004112 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.614478 B = 6807.280844 C = 7920.377396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.723 5.723 16 C 0.505 3.495 17 O -0.541 6.541 18 C -0.073 4.073 19 C -0.158 4.158 20 C -0.198 4.198 21 C -0.049 4.049 22 O -0.179 6.179 23 C -0.029 4.029 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.098 0.902 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.145 0.855 40 H 0.200 0.800 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -6.165 -13.995 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.300 5.300 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.374 5.374 16 C 0.290 3.710 17 O -0.418 6.418 18 C -0.113 4.113 19 C -0.160 4.160 20 C -0.217 4.217 21 C -0.116 4.116 22 O -0.074 6.074 23 C -0.097 4.097 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.163 0.837 40 H 0.216 0.784 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.456 -7.029 -13.624 15.337 hybrid contribution 0.595 0.248 0.501 0.817 sum 1.051 -6.781 -13.123 14.809 Atomic orbital electron populations 1.21722 0.97340 1.00396 1.00983 1.22188 0.93805 1.00956 1.01578 1.20933 0.85062 0.92954 0.98890 1.43609 0.99441 1.84823 1.02105 1.19045 1.05658 1.20351 0.93996 0.92055 1.25171 1.00797 0.94510 0.98121 1.69999 1.25609 1.14784 1.42588 0.86392 0.81658 0.77875 0.81502 1.21244 1.21684 1.20138 1.21058 1.00279 0.91251 0.86385 1.22424 0.94818 1.02613 0.82870 1.46142 1.58154 1.08445 1.24641 1.20516 0.80014 0.84713 0.85723 1.90696 1.54598 1.26686 1.69802 1.20033 1.01886 0.94216 0.95198 1.19828 0.96157 0.97864 1.02157 1.21667 1.01788 0.95501 1.02769 1.23909 0.86415 1.00219 1.01043 1.84041 1.36857 1.37068 1.49464 1.23795 1.01766 0.84522 0.99639 0.93821 0.93203 0.93476 0.92951 0.92373 0.93589 0.94775 0.93531 0.88414 0.95362 0.93154 0.91931 0.76994 0.88220 0.88185 0.83722 0.78357 0.78353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.15 -2.69 6.23 -26.73 -0.17 -2.86 16 3 C 0.15 3.08 5.72 -4.04 -0.02 3.06 16 4 N -0.58 -13.99 2.43 -173.24 -0.42 -14.41 16 5 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.53 11.47 55.49 0.64 -23.89 16 9 Si 0.90 21.33 29.60 -169.99 -5.03 16.29 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.14 3.03 5.45 -4.04 -0.02 3.01 16 14 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 15 N -0.72 -11.86 5.56 -60.30 -0.33 -12.20 16 16 C 0.51 8.35 7.82 -10.98 -0.09 8.26 16 17 O -0.54 -11.39 16.03 5.55 0.09 -11.30 16 18 C -0.07 -0.86 6.22 -29.03 -0.18 -1.04 16 19 C -0.16 -2.06 4.66 -104.74 -0.49 -2.54 16 20 C -0.20 -2.40 10.87 -39.70 -0.43 -2.83 16 21 C -0.05 -0.53 12.09 29.42 0.36 -0.18 16 22 O -0.18 -2.25 10.65 5.73 0.06 -2.19 16 23 C -0.03 -0.36 12.01 29.42 0.35 -0.01 16 24 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 1.00 6.64 -51.93 -0.34 0.66 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 31 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.10 2.41 5.52 -51.93 -0.29 2.12 16 33 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 34 H 0.05 1.06 6.64 -51.93 -0.34 0.71 16 35 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.40 5.35 8.47 -40.82 -0.35 5.01 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.20 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -32.44 346.89 -6.68 -39.12 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.33 Total: 5.16 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.57 Total: -1.81 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.12 Total: -50.50 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.15 Total: -13.49 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.44 -6.68 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713545073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.750 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds