Wall clock time and date at job start Tue Mar 31 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46855 * 2 1 4 4 N 1.46497 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00018 * 275.31074 * 4 3 2 6 6 H 1.08001 * 119.99729 * 37.57371 * 5 4 3 7 7 C 1.38815 * 119.99763 * 217.58061 * 5 4 3 8 8 N 1.31621 * 120.00062 * 21.42354 * 7 5 4 9 9 Si 1.86800 * 119.99947 * 201.42391 * 7 5 4 10 10 H 1.48503 * 109.47192 * 89.99409 * 9 7 5 11 11 H 1.48499 * 109.47068 * 210.00168 * 9 7 5 12 12 H 1.48504 * 109.46871 * 329.99806 * 9 7 5 13 13 C 1.46503 * 119.99876 * 95.31063 * 4 3 2 14 14 C 1.53003 * 109.47016 * 269.99881 * 13 4 3 15 15 N 1.46495 * 109.47313 * 180.02562 * 14 13 4 16 16 C 1.34777 * 120.00194 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99817 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00053 * 179.97438 * 16 15 14 19 19 C 1.50699 * 109.46996 * 180.02562 * 18 16 15 20 20 C 1.41382 * 126.58312 * 89.99761 * 19 18 16 21 21 C 1.34522 * 106.83875 * 180.25946 * 20 19 18 22 22 O 1.34301 * 108.41834 * 359.63676 * 21 20 19 23 23 C 1.34299 * 109.47951 * 0.37438 * 22 21 20 24 24 H 1.09008 * 109.46773 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47246 * 299.99544 * 1 2 3 26 26 H 1.08997 * 109.47481 * 60.00240 * 1 2 3 27 27 H 1.09001 * 109.46827 * 239.99805 * 2 1 3 28 28 H 1.08995 * 109.47312 * 120.00281 * 2 1 3 29 29 H 1.08995 * 109.47204 * 60.00081 * 3 2 1 30 30 H 1.09004 * 109.47007 * 299.99771 * 3 2 1 31 31 H 0.97002 * 119.99683 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47113 * 150.00119 * 13 4 3 33 33 H 1.08992 * 109.47595 * 29.99892 * 13 4 3 34 34 H 1.08995 * 109.47380 * 59.99949 * 14 13 4 35 35 H 1.09001 * 109.47084 * 300.00145 * 14 13 4 36 36 H 0.96996 * 119.99953 * 359.97438 * 15 14 13 37 37 H 1.08995 * 109.47218 * 59.99678 * 18 16 15 38 38 H 1.09001 * 109.47027 * 300.00007 * 18 16 15 39 39 H 1.07999 * 126.58028 * 359.97438 * 20 19 18 40 40 H 1.07994 * 125.78275 * 179.77557 * 21 20 19 41 41 H 1.08007 * 125.78884 * 179.79418 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1799 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1240 0.6478 9 14 6.5989 1.4955 2.6565 10 1 7.5686 0.5567 2.0370 11 1 7.3244 2.6768 3.1888 12 1 5.8868 0.8110 3.7654 13 6 4.2369 1.5602 -1.2642 14 6 4.4917 0.1648 -1.8378 15 7 5.2241 0.2824 -3.1011 16 6 5.5614 -0.8257 -3.7902 17 8 5.2580 -1.9202 -3.3646 18 6 6.3143 -0.7048 -5.0900 19 6 6.5654 -2.0791 -5.6548 20 6 5.7223 -2.7952 -6.5354 21 6 6.3242 -3.9732 -6.7794 22 8 7.4842 -4.0051 -6.1034 23 6 7.6343 -2.8604 -5.4172 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 6.4216 3.6258 0.7814 32 1 5.1894 2.0598 -1.0872 33 1 3.6476 2.1422 -1.9727 34 1 3.5393 -0.3348 -2.0148 35 1 5.0811 -0.4172 -1.1293 36 1 5.4664 1.1577 -3.4416 37 1 7.2665 -0.2047 -4.9131 38 1 5.7247 -0.1232 -5.7987 39 1 4.7746 -2.4623 -6.9321 40 1 5.9406 -4.7590 -7.4132 41 1 8.4715 -2.6095 -4.7827 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713545073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:37 Heat of formation + Delta-G solvation = -35.020238 kcal Electronic energy + Delta-G solvation = -21646.910386 eV Core-core repulsion = 18335.036063 eV Total energy + Delta-G solvation = -3311.874323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.42338 -40.56799 -38.24956 -35.71801 -34.90128 -34.60906 -32.65808 -31.43633 -30.03978 -28.29475 -27.34867 -25.08467 -22.75478 -22.47084 -22.12767 -21.77651 -20.91036 -18.80235 -18.39323 -17.84221 -17.03589 -16.78236 -16.65411 -16.44413 -15.91630 -15.72419 -15.43403 -14.81375 -14.61910 -14.58872 -14.25829 -13.80722 -13.64444 -13.37077 -13.30788 -13.08137 -12.92520 -12.64218 -12.52955 -12.40944 -12.21146 -12.02623 -11.88327 -11.66894 -11.34260 -11.05963 -10.54536 -10.50563 -9.98736 -9.41349 -8.59746 -7.86453 -5.49637 0.89203 1.43023 1.47067 1.53876 1.61309 1.71498 2.31186 2.40992 2.54336 3.21081 3.73906 3.81392 3.96769 4.08459 4.18675 4.22503 4.34838 4.38794 4.55893 4.57604 4.64319 4.67537 4.73713 4.81319 4.85812 4.98234 5.12709 5.16244 5.23297 5.25870 5.31364 5.42417 5.46580 5.60582 5.61742 5.65813 5.74888 6.21617 6.44387 6.68033 7.14302 7.35527 7.82108 8.34201 9.09155 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.004112 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.614478 B = 6807.280844 C = 7920.377396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.272 4.272 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.909 5.909 9 Si 0.950 3.050 10 H -0.289 1.289 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.146 3.854 14 C 0.121 3.879 15 N -0.715 5.715 16 C 0.504 3.496 17 O -0.590 6.590 18 C -0.061 4.061 19 C -0.181 4.181 20 C -0.222 4.222 21 C -0.047 4.047 22 O -0.191 6.191 23 C -0.044 4.044 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.255 0.745 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.414 0.586 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.157 0.843 40 H 0.235 0.765 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -6.250 -15.360 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.403 4.403 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.216 1.216 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.019 3.981 14 C -0.006 4.006 15 N -0.367 5.367 16 C 0.292 3.708 17 O -0.470 6.470 18 C -0.100 4.100 19 C -0.182 4.182 20 C -0.241 4.241 21 C -0.113 4.113 22 O -0.087 6.087 23 C -0.112 4.112 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.250 0.750 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.175 0.825 40 H 0.251 0.749 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.209 -7.091 -15.013 16.605 hybrid contribution 0.625 0.245 0.888 1.113 sum 0.834 -6.845 -14.125 15.719 Atomic orbital electron populations 1.21654 0.94183 1.01762 1.02051 1.22015 0.96480 0.98846 1.00117 1.21042 0.83392 0.94436 0.99083 1.43849 1.00861 1.85087 1.02048 1.19161 1.06367 1.19964 0.94787 0.93256 1.25719 1.01983 0.94651 0.99971 1.70080 1.25892 1.15444 1.43822 0.85559 0.79631 0.77319 0.79691 1.21601 1.21348 1.19801 1.20930 0.99215 0.91899 0.86103 1.21857 0.94173 1.00738 0.83809 1.45987 1.57706 1.09726 1.23292 1.21379 0.79139 0.83547 0.86737 1.90675 1.56551 1.28518 1.71295 1.20051 1.02840 0.94555 0.92589 1.20134 0.96699 0.98626 1.02787 1.21990 1.02544 0.96175 1.03345 1.24654 0.85517 1.00784 1.00360 1.84045 1.37664 1.37257 1.49755 1.24265 1.02543 0.84482 0.99862 0.92335 0.92540 0.92007 0.93790 0.94445 0.94637 0.93173 0.93619 0.90741 0.93671 0.93842 0.95699 0.75011 0.85432 0.85299 0.82547 0.74862 0.76596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.16 16 2 C -0.13 -4.94 6.23 30.60 0.19 -4.75 16 3 C 0.15 6.03 5.72 86.38 0.49 6.52 16 4 N -0.60 -29.13 2.43 -702.00 -1.71 -30.84 16 5 C -0.27 -14.82 9.45 84.03 0.79 -14.03 16 6 H 0.05 2.75 7.92 -2.91 -0.02 2.72 16 7 C -0.02 -1.35 4.95 84.86 0.42 -0.93 16 8 N -0.91 -50.54 11.47 21.65 0.25 -50.29 16 9 Si 0.95 44.24 29.60 68.60 2.03 46.27 16 10 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 C 0.15 6.42 5.45 86.38 0.47 6.89 16 14 C 0.12 4.96 6.00 86.38 0.52 5.48 16 15 N -0.71 -22.86 5.56 -463.06 -2.57 -25.43 16 16 C 0.50 16.18 7.82 87.66 0.69 16.86 16 17 O -0.59 -24.96 16.03 -3.04 -0.05 -25.01 16 18 C -0.06 -1.29 6.22 29.10 0.18 -1.11 16 19 C -0.18 -4.42 4.66 -19.94 -0.09 -4.51 16 20 C -0.22 -5.02 10.87 22.19 0.24 -4.78 16 21 C -0.05 -0.94 12.09 66.97 0.81 -0.13 16 22 O -0.19 -4.60 10.65 -2.43 -0.03 -4.62 16 23 C -0.04 -1.04 12.01 66.97 0.80 -0.24 16 24 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 1.67 6.64 -2.39 -0.02 1.65 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 30 H 0.05 1.89 7.83 -2.39 -0.02 1.87 16 31 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.07 3.70 5.52 -2.39 -0.01 3.69 16 33 H 0.04 1.81 7.86 -2.39 -0.02 1.79 16 34 H 0.04 1.84 6.64 -2.39 -0.02 1.83 16 35 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.41 10.46 8.47 -92.71 -0.79 9.67 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.24 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.22 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -71.06 346.89 4.39 -66.67 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.23 Total: 21.13 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.23 Total: 2.12 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.03 Total: -106.56 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.07 Total: -29.63 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.06 4.39 -66.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713545073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.651 kcal (2) G-P(sol) polarization free energy of solvation -71.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds