Wall clock time and date at job start Tue Mar 31 2020 03:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46742 * 2 1 4 4 N 1.46498 * 109.47231 * 119.99950 * 2 1 3 5 5 C 1.46498 * 120.00080 * 299.78764 * 4 2 1 6 6 C 1.53004 * 109.47531 * 271.72322 * 5 4 2 7 7 N 1.46499 * 109.47368 * 174.94917 * 6 5 4 8 8 C 1.46504 * 119.99633 * 269.99728 * 7 6 5 9 9 C 1.36933 * 120.00295 * 89.99386 * 7 6 5 10 10 H 1.08003 * 119.99649 * 23.71399 * 9 7 6 11 11 C 1.38809 * 120.00187 * 203.70590 * 9 7 6 12 12 N 1.31621 * 120.00020 * 10.55037 * 11 9 7 13 13 Si 1.86795 * 120.00205 * 190.54284 * 11 9 7 14 14 H 1.48500 * 109.47405 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47108 * 120.00568 * 13 11 9 16 16 H 1.48502 * 109.47577 * 240.00327 * 13 11 9 17 17 C 1.34778 * 120.00238 * 119.79229 * 4 2 1 18 18 O 1.21613 * 119.99655 * 4.78517 * 17 4 2 19 19 C 1.47368 * 120.00169 * 184.78985 * 17 4 2 20 20 C 1.47022 * 127.19411 * 335.64914 * 19 17 4 21 21 C 1.34184 * 105.95440 * 180.17352 * 20 19 17 22 22 O 1.34215 * 109.12430 * 359.60319 * 21 20 19 23 23 C 1.33658 * 110.90579 * 0.26565 * 22 21 20 24 24 H 1.08997 * 109.46898 * 300.00001 * 1 2 3 25 25 H 1.08991 * 109.47266 * 60.00094 * 1 2 3 26 26 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47334 * 240.00307 * 2 1 3 28 28 H 1.09007 * 109.46763 * 179.97438 * 3 2 1 29 29 H 1.08991 * 109.47163 * 299.99968 * 3 2 1 30 30 H 1.09003 * 109.46775 * 60.00509 * 3 2 1 31 31 H 1.08999 * 109.47298 * 31.72472 * 5 4 2 32 32 H 1.09003 * 109.47593 * 151.71903 * 5 4 2 33 33 H 1.09004 * 109.46529 * 294.94506 * 6 5 4 34 34 H 1.08998 * 109.46861 * 54.94561 * 6 5 4 35 35 H 1.09001 * 109.47272 * 93.33563 * 8 7 6 36 36 H 1.09003 * 109.47068 * 213.33517 * 8 7 6 37 37 H 1.08998 * 109.47365 * 333.33834 * 8 7 6 38 38 H 0.97002 * 120.00073 * 179.97438 * 12 11 9 39 39 H 1.08000 * 127.02501 * 0.07567 * 20 19 17 40 40 H 1.08002 * 125.43839 * 179.86699 * 21 20 19 41 41 H 1.08005 * 125.79784 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6683 -0.1874 2.5267 6 6 2.7035 0.8490 2.9688 7 7 2.2895 1.4396 4.2439 8 6 1.4460 2.6374 4.2567 9 6 2.6909 0.8723 5.4237 10 1 3.5812 0.2615 5.4538 11 6 1.9538 1.0822 6.5810 12 7 0.7667 1.6466 6.5119 13 14 2.6463 0.5636 8.2365 14 1 3.9884 -0.0423 8.0439 15 1 2.7624 1.7524 9.1189 16 1 1.7391 -0.4312 8.8631 17 6 2.7898 -1.7888 1.0725 18 8 3.1525 -2.1563 -0.0285 19 6 3.1936 -2.5444 2.2716 20 6 3.2967 -2.0384 3.6481 21 6 3.7014 -3.0779 4.3939 22 8 3.8425 -4.1555 3.6064 23 6 3.5451 -3.8609 2.3371 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8901 31 1 0.6823 0.2759 2.4922 32 1 1.6563 -1.0145 3.2365 33 1 3.6728 0.3653 3.0901 34 1 2.7797 1.6313 2.2136 35 1 0.3984 2.3433 4.3210 36 1 1.7038 3.2541 5.1177 37 1 1.6082 3.2059 3.3409 38 1 0.2514 1.7929 7.3206 39 1 3.0905 -1.0346 3.9891 40 1 3.8805 -3.0526 5.4587 41 1 3.5780 -4.5483 1.5046 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717946173.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:11 Heat of formation + Delta-G solvation = 4.336619 kcal Electronic energy + Delta-G solvation = -23305.503512 eV Core-core repulsion = 19995.335831 eV Total energy + Delta-G solvation = -3310.167681 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.46429 -40.97215 -38.26277 -36.92210 -34.64966 -33.30773 -32.44438 -30.70972 -29.70729 -28.17963 -27.87240 -25.39172 -24.93167 -22.72140 -22.35206 -21.51481 -20.17906 -18.92301 -18.51255 -17.86205 -17.13176 -16.87510 -16.70335 -15.98966 -15.75553 -15.30518 -15.18761 -14.92606 -14.60610 -14.37092 -14.23680 -14.02656 -13.36893 -13.29563 -13.26590 -12.99942 -12.79510 -12.73132 -12.68050 -12.32188 -12.18966 -11.99505 -11.86989 -11.73975 -11.53754 -11.06632 -10.63029 -10.55901 -9.88732 -9.60299 -8.71416 -7.79553 -5.28737 0.44603 1.17926 1.48793 1.52762 1.60639 1.92605 2.12460 2.23492 2.54387 3.35510 3.49269 3.77452 3.87647 4.00092 4.11151 4.14038 4.15365 4.34100 4.56270 4.60424 4.63106 4.67499 4.74992 4.84555 4.87732 4.90080 4.95514 5.01915 5.11166 5.19003 5.32363 5.35140 5.40759 5.44386 5.64813 5.69533 5.76379 6.08266 6.31995 6.40954 7.11686 7.17877 7.87444 8.33045 9.23819 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.007485 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.976846 B = 3739.822987 C = 5347.756519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.590 5.590 5 C 0.086 3.914 6 C 0.132 3.868 7 N -0.610 5.610 8 C 0.177 3.823 9 C -0.258 4.258 10 H 0.076 0.924 11 C -0.044 4.044 12 N -0.933 5.933 13 Si 0.957 3.043 14 H -0.260 1.260 15 H -0.298 1.298 16 H -0.293 1.293 17 C 0.586 3.414 18 O -0.584 6.584 19 C -0.269 4.269 20 C -0.221 4.221 21 C -0.038 4.038 22 O -0.175 6.175 23 C 0.051 3.949 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.007 0.993 36 H 0.019 0.981 37 H 0.026 0.974 38 H 0.247 0.753 39 H 0.178 0.822 40 H 0.231 0.769 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 -5.766 -9.234 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.321 5.321 5 C -0.039 4.039 6 C 0.005 3.995 7 N -0.334 5.334 8 C 0.032 3.968 9 C -0.388 4.388 10 H 0.093 0.907 11 C -0.240 4.240 12 N -0.579 5.579 13 Si 0.786 3.214 14 H -0.184 1.184 15 H -0.225 1.225 16 H -0.220 1.220 17 C 0.377 3.623 18 O -0.467 6.467 19 C -0.274 4.274 20 C -0.239 4.239 21 C -0.103 4.103 22 O -0.070 6.070 23 C -0.020 4.020 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.025 0.975 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.195 0.805 40 H 0.247 0.753 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.145 -6.130 -9.560 11.558 hybrid contribution -0.148 0.261 1.255 1.290 sum 1.998 -5.870 -8.305 10.364 Atomic orbital electron populations 1.22092 0.93679 1.02105 1.03318 1.21225 0.95074 0.93690 0.87604 1.22238 1.01045 0.94899 1.03337 1.48013 1.49458 1.26658 1.07957 1.22733 0.99926 0.99153 0.82057 1.21557 0.95444 0.94889 0.87573 1.44099 1.59727 1.28387 1.01189 1.20576 0.93280 0.86912 0.96061 1.19486 1.05108 1.27712 0.86518 0.90652 1.25711 0.95683 1.01098 1.01467 1.70208 1.11690 1.48710 1.27306 0.85355 0.78390 0.77136 0.80567 1.18394 1.22548 1.21981 1.17551 0.77406 0.80063 0.87251 1.90693 1.57740 1.70179 1.28063 1.21546 1.14757 0.96610 0.94439 1.24156 1.04983 1.03257 0.91524 1.24432 1.04401 0.83619 0.97887 1.83817 1.67757 1.37670 1.17753 1.24767 0.96182 0.95590 0.85426 0.92704 0.88967 0.93121 0.89079 0.93145 0.89138 0.92253 0.91375 0.89922 0.93870 0.91690 0.97481 0.96179 0.95529 0.94367 0.80504 0.75253 0.74228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.17 71.98 0.66 -2.99 16 2 C 0.13 3.47 3.25 45.00 0.15 3.62 16 3 C -0.16 -3.85 8.04 71.99 0.58 -3.27 16 4 N -0.59 -19.29 2.41 -801.73 -1.93 -21.22 16 5 C 0.09 3.10 4.70 86.38 0.41 3.50 16 6 C 0.13 5.06 5.01 86.38 0.43 5.50 16 7 N -0.61 -28.10 2.92 -726.92 -2.12 -30.22 16 8 C 0.18 8.15 9.01 127.77 1.15 9.30 16 9 C -0.26 -12.83 8.59 84.03 0.72 -12.10 16 10 H 0.08 3.60 7.08 -2.91 -0.02 3.58 16 11 C -0.04 -2.27 5.14 84.86 0.44 -1.84 16 12 N -0.93 -51.69 10.63 21.65 0.23 -51.46 16 13 Si 0.96 41.86 29.57 68.60 2.03 43.89 16 14 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 15 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 16 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 17 C 0.59 20.73 7.64 86.65 0.66 21.39 16 18 O -0.58 -22.47 16.34 -4.07 -0.07 -22.54 16 19 C -0.27 -8.89 5.87 -19.00 -0.11 -9.00 16 20 C -0.22 -7.50 8.13 23.65 0.19 -7.30 16 21 C -0.04 -1.09 12.03 66.89 0.80 -0.28 16 22 O -0.18 -4.70 10.52 4.41 0.05 -4.65 16 23 C 0.05 1.37 11.98 67.39 0.81 2.17 16 24 H 0.05 1.41 6.68 -2.39 -0.02 1.39 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 2.63 6.91 -2.39 -0.02 2.61 16 28 H 0.05 1.31 8.09 -2.38 -0.02 1.29 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.58 6.14 -2.39 -0.01 1.57 16 31 H 0.07 2.53 6.44 -2.39 -0.02 2.51 16 32 H 0.08 3.25 4.49 -2.39 -0.01 3.24 16 33 H 0.04 1.71 6.45 -2.38 -0.02 1.70 16 34 H 0.07 2.30 4.88 -2.39 -0.01 2.29 16 35 H 0.01 0.35 7.44 -2.39 -0.02 0.33 16 36 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 37 H 0.03 1.04 7.85 -2.39 -0.02 1.02 16 38 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 39 H 0.18 6.82 1.92 -2.91 -0.01 6.82 16 40 H 0.23 5.19 8.06 -2.91 -0.02 5.17 16 41 H 0.24 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -61.93 322.69 6.12 -55.81 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 1.05 Total: 21.69 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.89 Total: 8.70 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -3.83 Total: -102.90 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.02 Total: -27.19 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -61.93 6.12 -55.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717946173.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.150 kcal (2) G-P(sol) polarization free energy of solvation -61.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds