Wall clock time and date at job start Tue Mar 31 2020 02:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99940 * 2 1 4 4 H 1.08999 * 109.99091 * 358.91277 * 3 2 1 5 5 O 1.43741 * 109.87692 * 237.82820 * 3 2 1 6 6 C 1.44380 * 106.97747 * 267.09233 * 5 3 2 7 7 C 1.54991 * 103.48716 * 319.93575 * 6 5 3 8 8 C 1.54094 * 109.87791 * 119.99780 * 3 2 1 9 9 H 1.08998 * 110.49249 * 358.58613 * 8 3 2 10 10 C 1.50698 * 110.49072 * 236.06887 * 8 3 2 11 11 O 1.21287 * 119.99595 * 359.97438 * 10 8 3 12 12 N 1.34775 * 120.00419 * 180.02562 * 10 8 3 13 13 C 1.46503 * 120.00052 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47175 * 176.04812 * 13 12 10 15 15 N 1.46508 * 115.54633 * 279.55489 * 14 13 12 16 16 C 1.36934 * 119.99606 * 294.63293 * 15 14 13 17 17 H 1.08002 * 120.00350 * 353.16566 * 16 15 14 18 18 C 1.38809 * 119.99703 * 173.17025 * 16 15 14 19 19 N 1.31626 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46950 * 89.99794 * 20 18 16 22 22 H 1.48500 * 109.47339 * 210.00067 * 20 18 16 23 23 H 1.48503 * 109.47149 * 329.99946 * 20 18 16 24 24 C 1.52998 * 117.50073 * 133.88370 * 14 13 12 25 25 C 1.53000 * 117.49973 * 65.21929 * 14 13 12 26 26 H 1.07999 * 119.99812 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99897 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99812 * 180.02562 * 2 1 3 29 29 H 1.08989 * 110.61964 * 78.44251 * 6 5 3 30 30 H 1.09008 * 110.61514 * 201.28640 * 6 5 3 31 31 H 1.08997 * 110.91521 * 278.82600 * 7 6 5 32 32 H 1.08999 * 110.90502 * 155.22206 * 7 6 5 33 33 H 0.96997 * 119.99736 * 359.97438 * 12 10 8 34 34 H 1.09000 * 109.46638 * 296.04068 * 13 12 10 35 35 H 1.08998 * 109.47138 * 56.04715 * 13 12 10 36 36 H 0.97000 * 119.99756 * 114.63524 * 15 14 13 37 37 H 0.97003 * 119.99698 * 180.02562 * 19 18 16 38 38 H 1.08998 * 117.49954 * 359.97438 * 24 14 13 39 39 H 1.08999 * 117.49947 * 145.02248 * 24 14 13 40 40 H 1.09000 * 117.49750 * 214.98263 * 25 14 13 41 41 H 1.09000 * 117.49914 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3629 2.1399 -0.0194 5 8 2.9312 1.3685 -1.1442 6 6 4.2186 0.8668 -0.7253 7 6 4.3945 1.4632 0.6944 8 6 2.9529 1.3966 1.2550 9 1 2.8246 0.5121 1.8789 10 6 2.6335 2.6438 2.0382 11 8 1.7748 3.4042 1.6438 12 7 3.3026 2.9149 3.1763 13 6 2.9915 4.1271 3.9379 14 6 3.8164 4.1456 5.2264 15 7 3.2936 3.3269 6.3231 16 6 2.0965 3.6470 6.9059 17 1 1.5914 4.5623 6.6347 18 6 1.5322 2.7950 7.8453 19 7 2.1480 1.6798 8.1763 20 14 -0.1005 3.2319 8.6409 21 1 -1.2116 2.6714 7.8307 22 1 -0.1512 2.6629 10.0116 23 1 -0.2366 4.7090 8.7129 24 6 4.5226 5.4520 5.5945 25 6 5.3363 4.2573 5.0906 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 4.2118 -0.2224 -0.6860 30 1 5.0042 1.2208 -1.3930 31 1 4.7445 2.4942 0.6427 32 1 5.0725 0.8532 1.2912 33 1 3.9895 2.3069 3.4915 34 1 3.2340 5.0048 3.3387 35 1 1.9302 4.1381 4.1858 36 1 3.7954 2.5582 6.6364 37 1 1.7534 1.0843 8.8325 38 1 4.3998 6.2982 4.9185 39 1 4.5985 5.7022 6.6526 40 1 5.9472 3.7221 5.8176 41 1 5.7486 4.3172 4.0834 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723561764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:58 Heat of formation + Delta-G solvation = -24.947159 kcal Electronic energy + Delta-G solvation = -22164.368772 eV Core-core repulsion = 18852.931251 eV Total energy + Delta-G solvation = -3311.437521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47731 -38.63215 -37.40208 -33.96399 -33.70625 -33.06604 -32.24606 -29.73467 -28.74028 -26.62119 -23.95370 -23.42645 -22.42110 -21.85242 -20.00718 -19.86787 -19.10465 -17.39908 -17.11360 -16.53064 -16.11675 -15.66860 -15.24237 -14.88991 -14.67621 -14.18932 -13.85876 -13.69127 -13.33020 -13.18381 -13.07596 -12.42282 -12.16950 -11.97215 -11.78940 -11.55688 -11.40989 -11.05262 -11.01776 -11.00628 -10.92965 -10.29764 -10.26944 -9.83289 -9.80046 -9.74113 -9.49179 -9.31645 -8.89187 -8.64863 -7.10210 -5.87457 -3.18123 2.11066 2.84472 3.36423 3.39800 3.45697 3.46370 3.91258 4.33259 4.38430 4.53683 4.55711 4.69246 4.93175 5.03239 5.06959 5.17215 5.24195 5.28993 5.37779 5.41854 5.51247 5.53835 5.59098 5.74040 5.77522 5.79035 5.98341 6.03462 6.21126 6.38024 6.47895 6.51654 6.63704 6.65136 6.71860 6.76101 6.82191 7.66731 7.82136 8.31208 8.47896 9.42323 9.95281 10.30815 11.34396 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.004665 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.541301 B = 6000.858467 C = 7028.228077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 C 0.113 3.887 4 H 0.122 0.878 5 O -0.364 6.364 6 C 0.045 3.955 7 C -0.144 4.144 8 C -0.138 4.138 9 H 0.112 0.888 10 C 0.521 3.479 11 O -0.545 6.545 12 N -0.706 5.706 13 C 0.147 3.853 14 C 0.128 3.872 15 N -0.688 5.688 16 C -0.240 4.240 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C -0.187 4.187 25 C -0.187 4.187 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.400 0.600 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -2.557 -14.966 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.055 3.945 4 H 0.139 0.861 5 O -0.283 6.283 6 C -0.031 4.031 7 C -0.182 4.182 8 C -0.160 4.160 9 H 0.130 0.870 10 C 0.306 3.694 11 O -0.424 6.424 12 N -0.355 5.355 13 C 0.021 3.979 14 C 0.034 3.966 15 N -0.328 5.328 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.228 4.228 25 C -0.224 4.224 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.503 -1.888 -15.345 16.410 hybrid contribution -0.334 -0.609 1.184 1.373 sum 5.168 -2.497 -14.160 15.279 Atomic orbital electron populations 1.23930 0.95849 1.02294 0.98222 1.23265 0.96485 0.98268 1.01732 1.21893 0.92213 0.96877 0.83472 0.86080 1.88968 1.21397 1.84777 1.33128 1.23560 0.86637 0.98308 0.94636 1.23144 0.94864 1.03189 0.96989 1.22691 0.96701 0.98559 0.98040 0.87016 1.20103 0.81400 0.86749 0.81170 1.90662 1.32649 1.49951 1.69089 1.45841 1.39910 1.26084 1.23676 1.21281 1.01247 0.85258 0.90107 1.20171 0.89857 0.96562 0.89993 1.41776 1.23315 1.32062 1.35607 1.19168 0.96902 1.03587 1.17363 0.90976 1.24770 0.98818 0.96513 1.00327 1.69663 1.39516 1.12483 1.36188 0.86191 0.83774 0.77756 0.78496 1.21564 1.21729 1.20571 1.23373 1.05438 0.92272 1.01736 1.23078 0.94097 1.03709 1.01564 0.88043 0.88106 0.87257 0.91991 0.88753 0.89858 0.89178 0.76600 0.92509 0.90213 0.77793 0.93405 0.89879 0.88621 0.88997 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 14.32 29.01 0.42 -1.46 16 2 C -0.18 -2.11 8.87 -36.03 -0.32 -2.43 16 3 C 0.11 1.51 3.44 -27.31 -0.09 1.41 16 4 H 0.12 1.90 6.11 -51.93 -0.32 1.58 16 5 O -0.36 -4.81 11.18 -35.23 -0.39 -5.21 16 6 C 0.05 0.43 7.66 38.21 0.29 0.72 16 7 C -0.14 -1.38 6.69 -24.72 -0.17 -1.54 16 8 C -0.14 -1.72 3.06 -90.24 -0.28 -2.00 16 9 H 0.11 1.28 7.69 -51.93 -0.40 0.88 16 10 C 0.52 8.42 7.02 -10.99 -0.08 8.34 16 11 O -0.55 -10.77 15.26 5.55 0.08 -10.69 16 12 N -0.71 -11.13 5.51 -60.29 -0.33 -11.46 16 13 C 0.15 2.65 5.72 -4.04 -0.02 2.63 16 14 C 0.13 2.39 2.16 -131.82 -0.28 2.10 16 15 N -0.69 -16.17 5.49 -47.23 -0.26 -16.43 16 16 C -0.24 -6.40 9.56 -15.06 -0.14 -6.54 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -27.11 13.07 55.49 0.73 -26.39 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.19 -3.13 10.11 -26.69 -0.27 -3.40 16 25 C -0.19 -2.82 10.07 -26.69 -0.27 -3.09 16 26 H 0.10 1.19 7.85 -52.49 -0.41 0.77 16 27 H 0.10 0.95 8.06 -52.49 -0.42 0.52 16 28 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 5.58 8.41 -40.82 -0.34 5.23 16 34 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 35 H 0.08 1.72 7.79 -51.93 -0.40 1.31 16 36 H 0.39 9.65 8.05 -40.82 -0.33 9.32 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -31.33 346.45 -7.66 -38.99 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -6.37 Total: 14.43 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.31 Total: -5.58 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.13 Total: -54.28 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.31 Total: -15.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.33 -7.66 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723561764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.041 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds