Wall clock time and date at job start Tue Mar 31 2020 02:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99940 * 2 1 4 4 H 1.08999 * 109.99091 * 358.91277 * 3 2 1 5 5 O 1.43741 * 109.87692 * 237.82820 * 3 2 1 6 6 C 1.44380 * 106.97747 * 267.09233 * 5 3 2 7 7 C 1.54991 * 103.48716 * 319.93575 * 6 5 3 8 8 C 1.54094 * 109.87791 * 119.99780 * 3 2 1 9 9 H 1.08998 * 110.49249 * 358.58613 * 8 3 2 10 10 C 1.50698 * 110.49072 * 236.06887 * 8 3 2 11 11 O 1.21287 * 119.99595 * 359.97438 * 10 8 3 12 12 N 1.34775 * 120.00419 * 180.02562 * 10 8 3 13 13 C 1.46503 * 120.00052 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47175 * 176.04812 * 13 12 10 15 15 N 1.46508 * 115.54633 * 279.55489 * 14 13 12 16 16 C 1.36934 * 119.99606 * 294.63293 * 15 14 13 17 17 H 1.08002 * 120.00350 * 353.16566 * 16 15 14 18 18 C 1.38809 * 119.99703 * 173.17025 * 16 15 14 19 19 N 1.31626 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46950 * 89.99794 * 20 18 16 22 22 H 1.48500 * 109.47339 * 210.00067 * 20 18 16 23 23 H 1.48503 * 109.47149 * 329.99946 * 20 18 16 24 24 C 1.52998 * 117.50073 * 133.88370 * 14 13 12 25 25 C 1.53000 * 117.49973 * 65.21929 * 14 13 12 26 26 H 1.07999 * 119.99812 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99897 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99812 * 180.02562 * 2 1 3 29 29 H 1.08989 * 110.61964 * 78.44251 * 6 5 3 30 30 H 1.09008 * 110.61514 * 201.28640 * 6 5 3 31 31 H 1.08997 * 110.91521 * 278.82600 * 7 6 5 32 32 H 1.08999 * 110.90502 * 155.22206 * 7 6 5 33 33 H 0.96997 * 119.99736 * 359.97438 * 12 10 8 34 34 H 1.09000 * 109.46638 * 296.04068 * 13 12 10 35 35 H 1.08998 * 109.47138 * 56.04715 * 13 12 10 36 36 H 0.97000 * 119.99756 * 114.63524 * 15 14 13 37 37 H 0.97003 * 119.99698 * 180.02562 * 19 18 16 38 38 H 1.08998 * 117.49954 * 359.97438 * 24 14 13 39 39 H 1.08999 * 117.49947 * 145.02248 * 24 14 13 40 40 H 1.09000 * 117.49750 * 214.98263 * 25 14 13 41 41 H 1.09000 * 117.49914 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3629 2.1399 -0.0194 5 8 2.9312 1.3685 -1.1442 6 6 4.2186 0.8668 -0.7253 7 6 4.3945 1.4632 0.6944 8 6 2.9529 1.3966 1.2550 9 1 2.8246 0.5121 1.8789 10 6 2.6335 2.6438 2.0382 11 8 1.7748 3.4042 1.6438 12 7 3.3026 2.9149 3.1763 13 6 2.9915 4.1271 3.9379 14 6 3.8164 4.1456 5.2264 15 7 3.2936 3.3269 6.3231 16 6 2.0965 3.6470 6.9059 17 1 1.5914 4.5623 6.6347 18 6 1.5322 2.7950 7.8453 19 7 2.1480 1.6798 8.1763 20 14 -0.1005 3.2319 8.6409 21 1 -1.2116 2.6714 7.8307 22 1 -0.1512 2.6629 10.0116 23 1 -0.2366 4.7090 8.7129 24 6 4.5226 5.4520 5.5945 25 6 5.3363 4.2573 5.0906 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 4.2118 -0.2224 -0.6860 30 1 5.0042 1.2208 -1.3930 31 1 4.7445 2.4942 0.6427 32 1 5.0725 0.8532 1.2912 33 1 3.9895 2.3069 3.4915 34 1 3.2340 5.0048 3.3387 35 1 1.9302 4.1381 4.1858 36 1 3.7954 2.5582 6.6364 37 1 1.7534 1.0843 8.8325 38 1 4.3998 6.2982 4.9185 39 1 4.5985 5.7022 6.6526 40 1 5.9472 3.7221 5.8176 41 1 5.7486 4.3172 4.0834 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723561764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:57 Heat of formation + Delta-G solvation = -47.184653 kcal Electronic energy + Delta-G solvation = -22165.333062 eV Core-core repulsion = 18852.931251 eV Total energy + Delta-G solvation = -3312.401811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58085 -39.84568 -38.81686 -35.38747 -34.87563 -34.67467 -33.21549 -31.64963 -29.64208 -27.96925 -25.95615 -24.46333 -23.39530 -23.05784 -21.19100 -20.90973 -20.54318 -19.15124 -18.50352 -17.51719 -17.31323 -16.90517 -16.55992 -16.19526 -15.92464 -15.82829 -15.25809 -14.91378 -14.72032 -14.54169 -14.01402 -13.83454 -13.53505 -13.18202 -12.93781 -12.88515 -12.80796 -12.48045 -12.28195 -12.23438 -12.21033 -11.89240 -11.84671 -11.77465 -11.08322 -10.95240 -10.70148 -10.59921 -10.38207 -10.05892 -9.03200 -7.98301 -5.26554 1.20943 1.44084 1.45858 1.52994 1.57933 2.12374 2.51218 3.03478 3.08450 3.37436 3.44170 3.61889 3.66071 3.66752 3.84781 4.11334 4.17819 4.19716 4.22322 4.27878 4.32804 4.53296 4.75227 4.77207 4.82716 4.84795 4.89663 4.92943 5.01418 5.04598 5.05695 5.19847 5.38091 5.47437 5.53580 5.57447 5.76649 5.89362 6.25735 6.56340 7.21825 7.31812 8.05286 8.29067 9.24001 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.004665 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.541301 B = 6000.858467 C = 7028.228077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.184 4.184 3 C 0.112 3.888 4 H 0.087 0.913 5 O -0.387 6.387 6 C 0.041 3.959 7 C -0.136 4.136 8 C -0.133 4.133 9 H 0.126 0.874 10 C 0.515 3.485 11 O -0.588 6.588 12 N -0.698 5.698 13 C 0.158 3.842 14 C 0.097 3.903 15 N -0.697 5.697 16 C -0.232 4.232 17 H 0.067 0.933 18 C -0.065 4.065 19 N -0.962 5.962 20 Si 0.961 3.039 21 H -0.293 1.293 22 H -0.293 1.293 23 H -0.272 1.272 24 C -0.185 4.185 25 C -0.150 4.150 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.411 0.589 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.378 0.622 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 -3.057 -15.970 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.202 4.202 3 C 0.054 3.946 4 H 0.105 0.895 5 O -0.307 6.307 6 C -0.035 4.035 7 C -0.173 4.173 8 C -0.154 4.154 9 H 0.144 0.856 10 C 0.303 3.697 11 O -0.469 6.469 12 N -0.348 5.348 13 C 0.032 3.968 14 C 0.005 3.995 15 N -0.336 5.336 16 C -0.363 4.363 17 H 0.085 0.915 18 C -0.258 4.258 19 N -0.613 5.613 20 Si 0.791 3.209 21 H -0.220 1.220 22 H -0.219 1.219 23 H -0.197 1.197 24 C -0.226 4.226 25 C -0.187 4.187 26 H 0.106 0.894 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.247 0.753 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.211 0.789 37 H 0.060 0.940 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.369 -2.361 -16.373 18.109 hybrid contribution -0.856 -0.368 1.411 1.691 sum 6.513 -2.729 -14.962 16.544 Atomic orbital electron populations 1.24101 0.96087 1.02746 0.98042 1.23376 0.96614 0.98331 1.01888 1.21749 0.92193 0.96581 0.84084 0.89518 1.88939 1.23012 1.85406 1.33305 1.23842 0.85382 0.99550 0.94750 1.23191 0.93124 1.03652 0.97380 1.22704 0.98697 0.96665 0.97335 0.85615 1.20806 0.80434 0.87458 0.81045 1.90646 1.34447 1.51713 1.70138 1.45772 1.40053 1.25659 1.23292 1.20987 0.98563 0.86832 0.90396 1.20356 0.92442 0.97826 0.88861 1.41796 1.22439 1.32428 1.36918 1.19398 0.97604 1.02871 1.16456 0.91467 1.25405 1.01720 0.96959 1.01741 1.69777 1.40798 1.13482 1.37211 0.85327 0.80474 0.77777 0.77345 1.22021 1.21919 1.19704 1.23387 1.04955 0.92699 1.01529 1.23169 0.91153 1.01103 1.03289 0.89434 0.85927 0.84940 0.89969 0.86867 0.90425 0.86027 0.75261 0.91096 0.94545 0.78881 0.94007 0.87622 0.90223 0.88761 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.18 -4.12 8.87 25.64 0.23 -3.89 16 3 C 0.11 2.94 3.44 30.22 0.10 3.05 16 4 H 0.09 2.87 6.11 -2.39 -0.01 2.85 16 5 O -0.39 -9.79 11.18 -148.98 -1.66 -11.45 16 6 C 0.04 0.64 7.66 72.66 0.56 1.20 16 7 C -0.14 -2.19 6.69 31.90 0.21 -1.97 16 8 C -0.13 -3.11 3.06 -10.55 -0.03 -3.14 16 9 H 0.13 2.61 7.69 -2.39 -0.02 2.59 16 10 C 0.52 16.52 7.02 87.66 0.62 17.14 16 11 O -0.59 -23.97 15.26 -3.05 -0.05 -24.01 16 12 N -0.70 -21.29 5.51 -463.05 -2.55 -23.84 16 13 C 0.16 5.65 5.72 86.38 0.49 6.15 16 14 C 0.10 3.51 2.16 3.60 0.01 3.52 16 15 N -0.70 -32.76 5.49 -303.33 -1.66 -34.43 16 16 C -0.23 -12.50 9.56 84.03 0.80 -11.69 16 17 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 18 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 19 N -0.96 -56.84 13.07 21.65 0.28 -56.56 16 20 Si 0.96 46.13 29.55 68.60 2.03 48.16 16 21 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 24 C -0.19 -5.80 10.11 30.62 0.31 -5.49 16 25 C -0.15 -4.04 10.07 30.62 0.31 -3.73 16 26 H 0.09 2.15 7.85 -2.91 -0.02 2.13 16 27 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.36 7.86 -2.39 -0.02 1.34 16 32 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.41 10.62 8.41 -92.71 -0.78 9.84 16 34 H 0.07 2.32 7.94 -2.39 -0.02 2.30 16 35 H 0.04 1.61 7.79 -2.39 -0.02 1.59 16 36 H 0.38 18.89 8.05 -92.71 -0.75 18.14 16 37 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.11 2.83 8.08 -2.39 -0.02 2.81 16 39 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -69.92 346.45 0.94 -68.98 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.49 Total: 38.11 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 5.04 Total: -4.95 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -3.93 Total: -114.82 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.71 Total: -35.46 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -69.92 0.94 -68.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723561764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.796 kcal (2) G-P(sol) polarization free energy of solvation -69.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds