Wall clock time and date at job start Tue Mar 31 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47176 * 2 1 4 4 C 1.50694 * 109.47347 * 119.99513 * 2 1 3 5 5 H 1.08003 * 120.00348 * 119.99845 * 4 2 1 6 6 C 1.37883 * 119.99942 * 300.00567 * 4 2 1 7 7 N 1.31514 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99728 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47467 * 59.99634 * 8 6 4 10 10 H 1.48507 * 109.46864 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47107 * 299.99115 * 8 6 4 12 12 O 1.45201 * 109.47422 * 239.99798 * 2 1 3 13 13 C 1.34759 * 117.00142 * 89.99625 * 12 2 1 14 14 O 1.21526 * 119.99677 * 0.02562 * 13 12 2 15 15 C 1.47286 * 119.99802 * 179.97438 * 13 12 2 16 16 C 1.38122 * 126.42868 * 5.83206 * 15 13 12 17 17 N 1.34225 * 107.40721 * 179.97438 * 16 15 13 18 18 C 1.46500 * 125.74281 * 180.26264 * 17 16 15 19 19 N 1.39925 * 108.51292 * 359.97438 * 17 16 15 20 20 C 1.30430 * 108.92247 * 359.97438 * 19 17 16 21 21 C 1.50695 * 125.99550 * 179.97438 * 20 19 17 22 22 C 1.52999 * 109.47540 * 357.82440 * 21 20 19 23 23 C 1.53005 * 109.47294 * 117.82641 * 21 20 19 24 24 C 1.53005 * 109.47361 * 237.82745 * 21 20 19 25 25 H 1.09000 * 109.46721 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47250 * 300.00578 * 1 2 3 27 27 H 1.09004 * 109.46831 * 60.00397 * 1 2 3 28 28 H 0.97003 * 119.99791 * 179.97438 * 7 6 4 29 29 H 1.07997 * 126.29310 * 0.02562 * 16 15 13 30 30 H 1.09005 * 109.46637 * 269.71971 * 18 17 16 31 31 H 1.08995 * 109.47280 * 29.71252 * 18 17 16 32 32 H 1.08992 * 109.47491 * 149.72041 * 18 17 16 33 33 H 1.09002 * 109.46395 * 59.99576 * 22 21 20 34 34 H 1.08995 * 109.47870 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.46903 * 300.00461 * 22 21 20 36 36 H 1.09006 * 109.46890 * 64.99811 * 23 21 20 37 37 H 1.08999 * 109.47267 * 185.00103 * 23 21 20 38 38 H 1.09002 * 109.46875 * 305.00463 * 23 21 20 39 39 H 1.09000 * 109.47174 * 54.84052 * 24 21 20 40 40 H 1.08997 * 109.47465 * 174.84609 * 24 21 20 41 41 H 1.09005 * 109.46985 * 294.84484 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9434 0.8304 2.6033 8 14 2.3214 -1.1201 4.0080 9 1 3.8063 -1.1206 4.0082 10 1 1.8269 -0.4195 5.2205 11 1 1.8258 -2.5199 4.0079 12 8 2.0141 -0.6845 -1.1855 13 6 2.2180 0.0669 -2.2855 14 8 1.9977 1.2616 -2.2545 15 6 2.7089 -0.5598 -3.5247 16 6 2.8954 -1.9109 -3.7424 17 7 3.3519 -2.0563 -4.9962 18 6 3.6794 -3.3280 -5.6457 19 7 3.4563 -0.7893 -5.5808 20 6 3.0755 0.1087 -4.7149 21 6 3.0356 1.5978 -4.9427 22 6 3.5659 1.9141 -6.3425 23 6 1.5936 2.0942 -4.8194 24 6 3.9068 2.2972 -3.8973 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7087 1.1616 3.4843 29 1 2.7075 -2.7044 -3.0344 30 1 4.7278 -3.5675 -5.4676 31 1 3.0514 -4.1183 -5.2344 32 1 3.5028 -3.2445 -6.7179 33 1 2.9452 1.4158 -7.0872 34 1 3.5366 2.9911 -6.5075 35 1 4.5932 1.5605 -6.4303 36 1 1.2457 1.9494 -3.7965 37 1 1.5513 3.1539 -5.0711 38 1 0.9564 1.5327 -5.5027 39 1 4.9127 1.8782 -3.9234 40 1 3.9518 3.3640 -4.1166 41 1 3.4766 2.1478 -2.9070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128746046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:12 Heat of formation + Delta-G solvation = -17.707898 kcal Electronic energy + Delta-G solvation = -22744.589171 eV Core-core repulsion = 19433.465568 eV Total energy + Delta-G solvation = -3311.123603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39649 -39.01644 -36.85109 -35.30421 -33.22453 -32.68015 -30.55750 -29.32251 -27.11012 -26.84132 -26.76803 -25.28127 -23.38593 -21.57584 -21.13896 -19.59897 -18.17183 -17.40457 -16.40572 -16.18426 -15.66596 -15.10734 -14.84717 -14.71670 -14.42975 -13.91102 -13.86525 -13.22554 -12.97054 -12.73908 -12.63871 -12.16950 -11.93193 -11.85226 -11.78420 -11.35850 -11.17578 -11.09081 -10.88795 -10.87286 -10.71034 -10.68202 -10.42535 -10.26147 -10.12682 -9.41648 -9.26783 -9.25983 -8.84761 -8.52321 -8.43413 -6.15558 -4.22109 1.65211 2.32246 2.36770 3.27278 3.31070 3.33198 3.78733 3.88200 4.31462 4.42236 4.73091 4.84606 4.95508 5.13268 5.17514 5.19890 5.27729 5.42460 5.63894 5.70188 5.86263 5.96611 6.09791 6.10530 6.14968 6.25638 6.33265 6.38270 6.61583 6.70789 6.82546 6.86939 6.88314 6.95027 6.99103 7.31578 7.65017 7.69245 7.78961 8.03320 8.20611 8.73391 8.98383 9.43293 10.91749 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.004846 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.325257 B = 5776.393719 C = 6571.016217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.218 3.782 3 H 0.048 0.952 4 C -0.520 4.520 5 H 0.067 0.933 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.910 3.090 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.356 6.356 13 C 0.529 3.471 14 O -0.510 6.510 15 C -0.266 4.266 16 C 0.121 3.879 17 N -0.371 5.371 18 C 0.100 3.900 19 N -0.304 5.304 20 C 0.147 3.853 21 C 0.019 3.981 22 C -0.134 4.134 23 C -0.155 4.155 24 C -0.156 4.156 25 H 0.034 0.966 26 H 0.098 0.902 27 H 0.017 0.983 28 H 0.266 0.734 29 H 0.191 0.809 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -4.752 -15.392 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.166 3.834 3 H 0.066 0.934 4 C -0.558 4.558 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.737 3.263 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 O -0.272 6.272 13 C 0.375 3.625 14 O -0.403 6.403 15 C -0.279 4.279 16 C -0.030 4.030 17 N -0.149 5.149 18 C -0.041 4.041 19 N -0.124 5.124 20 C -0.020 4.020 21 C 0.017 3.983 22 C -0.192 4.192 23 C -0.212 4.212 24 C -0.213 4.213 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.208 0.792 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.307 -4.683 -16.449 17.637 hybrid contribution -0.017 -0.478 1.614 1.683 sum 4.289 -5.161 -14.836 16.283 Atomic orbital electron populations 1.22157 0.97684 0.99964 1.01394 1.20587 0.91236 0.93990 0.77619 0.93404 1.20983 1.32442 1.13435 0.88984 0.91512 1.24866 0.94965 0.95095 0.98973 1.69890 1.36033 1.22506 1.24200 0.86363 0.79204 0.79520 0.81195 1.20042 1.21057 1.20022 1.86529 1.76207 1.43354 1.21145 1.19884 0.74353 0.84926 0.83358 1.90519 1.49671 1.15889 1.84208 1.19618 1.20041 0.92302 0.95899 1.23297 0.94098 0.98368 0.87191 1.48285 1.49747 1.06695 1.10164 1.21926 1.02192 0.80393 0.99586 1.77119 1.26522 0.87237 1.21544 1.22405 0.93982 0.96048 0.89606 1.18979 0.97841 0.85262 0.96188 1.21811 1.01059 1.00908 0.95401 1.22178 0.93587 0.99889 1.05553 1.22186 0.98280 0.99106 1.01769 0.94640 0.88360 0.96407 0.92394 0.79195 0.90441 0.89115 0.89166 0.92640 0.92449 0.92689 0.88071 0.92505 0.93862 0.93747 0.92425 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.33 37.16 0.35 -3.53 16 2 C 0.22 5.78 2.56 -27.89 -0.07 5.70 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.52 -14.43 8.90 -34.44 -0.31 -14.74 16 5 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 O -0.36 -8.40 9.70 -40.65 -0.39 -8.79 16 13 C 0.53 11.29 7.66 34.41 0.26 11.56 16 14 O -0.51 -11.46 9.26 -19.29 -0.18 -11.64 16 15 C -0.27 -4.75 5.96 -105.08 -0.63 -5.38 16 16 C 0.12 1.75 11.34 -16.55 -0.19 1.56 16 17 N -0.37 -4.81 3.98 -67.59 -0.27 -5.08 16 18 C 0.10 0.74 11.44 59.85 0.68 1.43 16 19 N -0.30 -4.71 11.79 33.90 0.40 -4.31 16 20 C 0.15 2.46 5.64 -82.01 -0.46 2.00 16 21 C 0.02 0.30 0.75 -155.66 -0.12 0.18 16 22 C -0.13 -1.74 7.96 37.16 0.30 -1.44 16 23 C -0.15 -2.40 8.27 37.16 0.31 -2.10 16 24 C -0.16 -2.49 8.21 37.16 0.30 -2.18 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.10 2.64 6.07 -51.93 -0.32 2.32 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.87 4.70 -51.93 -0.24 1.62 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.89 4.58 -51.93 -0.24 1.65 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -31.39 334.62 -5.66 -37.05 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.21 Total: 1.55 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.34 Total: -5.30 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.76 Total: -33.80 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.57 Total: -20.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.39 -5.66 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128746046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.345 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds