Wall clock time and date at job start Tue Mar 31 2020 02:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47176 * 2 1 4 4 C 1.50694 * 109.47347 * 119.99513 * 2 1 3 5 5 H 1.08003 * 120.00348 * 119.99845 * 4 2 1 6 6 C 1.37883 * 119.99942 * 300.00567 * 4 2 1 7 7 N 1.31514 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99728 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47467 * 59.99634 * 8 6 4 10 10 H 1.48507 * 109.46864 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47107 * 299.99115 * 8 6 4 12 12 O 1.45201 * 109.47422 * 239.99798 * 2 1 3 13 13 C 1.34759 * 117.00142 * 89.99625 * 12 2 1 14 14 O 1.21526 * 119.99677 * 0.02562 * 13 12 2 15 15 C 1.47286 * 119.99802 * 179.97438 * 13 12 2 16 16 C 1.38122 * 126.42868 * 5.83206 * 15 13 12 17 17 N 1.34225 * 107.40721 * 179.97438 * 16 15 13 18 18 C 1.46500 * 125.74281 * 180.26264 * 17 16 15 19 19 N 1.39925 * 108.51292 * 359.97438 * 17 16 15 20 20 C 1.30430 * 108.92247 * 359.97438 * 19 17 16 21 21 C 1.50695 * 125.99550 * 179.97438 * 20 19 17 22 22 C 1.52999 * 109.47540 * 357.82440 * 21 20 19 23 23 C 1.53005 * 109.47294 * 117.82641 * 21 20 19 24 24 C 1.53005 * 109.47361 * 237.82745 * 21 20 19 25 25 H 1.09000 * 109.46721 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47250 * 300.00578 * 1 2 3 27 27 H 1.09004 * 109.46831 * 60.00397 * 1 2 3 28 28 H 0.97003 * 119.99791 * 179.97438 * 7 6 4 29 29 H 1.07997 * 126.29310 * 0.02562 * 16 15 13 30 30 H 1.09005 * 109.46637 * 269.71971 * 18 17 16 31 31 H 1.08995 * 109.47280 * 29.71252 * 18 17 16 32 32 H 1.08992 * 109.47491 * 149.72041 * 18 17 16 33 33 H 1.09002 * 109.46395 * 59.99576 * 22 21 20 34 34 H 1.08995 * 109.47870 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.46903 * 300.00461 * 22 21 20 36 36 H 1.09006 * 109.46890 * 64.99811 * 23 21 20 37 37 H 1.08999 * 109.47267 * 185.00103 * 23 21 20 38 38 H 1.09002 * 109.46875 * 305.00463 * 23 21 20 39 39 H 1.09000 * 109.47174 * 54.84052 * 24 21 20 40 40 H 1.08997 * 109.47465 * 174.84609 * 24 21 20 41 41 H 1.09005 * 109.46985 * 294.84484 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9434 0.8304 2.6033 8 14 2.3214 -1.1201 4.0080 9 1 3.8063 -1.1206 4.0082 10 1 1.8269 -0.4195 5.2205 11 1 1.8258 -2.5199 4.0079 12 8 2.0141 -0.6845 -1.1855 13 6 2.2180 0.0669 -2.2855 14 8 1.9977 1.2616 -2.2545 15 6 2.7089 -0.5598 -3.5247 16 6 2.8954 -1.9109 -3.7424 17 7 3.3519 -2.0563 -4.9962 18 6 3.6794 -3.3280 -5.6457 19 7 3.4563 -0.7893 -5.5808 20 6 3.0755 0.1087 -4.7149 21 6 3.0356 1.5978 -4.9427 22 6 3.5659 1.9141 -6.3425 23 6 1.5936 2.0942 -4.8194 24 6 3.9068 2.2972 -3.8973 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7087 1.1616 3.4843 29 1 2.7075 -2.7044 -3.0344 30 1 4.7278 -3.5675 -5.4676 31 1 3.0514 -4.1183 -5.2344 32 1 3.5028 -3.2445 -6.7179 33 1 2.9452 1.4158 -7.0872 34 1 3.5366 2.9911 -6.5075 35 1 4.5932 1.5605 -6.4303 36 1 1.2457 1.9494 -3.7965 37 1 1.5513 3.1539 -5.0711 38 1 0.9564 1.5327 -5.5027 39 1 4.9127 1.8782 -3.9234 40 1 3.9518 3.3640 -4.1166 41 1 3.4766 2.1478 -2.9070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128746046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:10 Heat of formation + Delta-G solvation = -35.824879 kcal Electronic energy + Delta-G solvation = -22745.374782 eV Core-core repulsion = 19433.465568 eV Total energy + Delta-G solvation = -3311.909214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.60029 -40.70229 -38.16434 -36.98625 -35.23752 -33.69569 -32.05915 -31.11514 -28.12234 -28.09659 -27.82525 -27.38882 -24.89612 -22.91240 -22.60607 -21.21997 -19.44923 -18.92037 -18.26603 -17.81466 -16.89796 -16.76381 -16.31308 -16.08707 -15.86470 -15.12821 -14.98898 -14.87188 -14.31155 -14.12631 -13.75172 -13.56340 -13.43482 -13.16861 -12.99080 -12.93335 -12.91763 -12.77769 -12.41548 -12.39730 -12.22435 -12.11235 -12.02022 -11.85594 -11.51604 -11.35367 -10.92967 -10.81706 -10.52540 -10.39258 -9.73047 -8.23641 -6.39813 0.41605 1.00888 1.39056 1.44794 1.47977 1.56042 2.16745 2.29430 2.49839 3.07186 3.26640 3.62482 3.95501 4.09014 4.10526 4.27699 4.35693 4.44504 4.51381 4.58269 4.67315 4.71383 4.81053 4.82088 4.87020 4.92481 4.93214 5.00312 5.06161 5.13232 5.18198 5.26853 5.44168 5.52746 5.54797 5.61204 5.72184 5.87776 6.02163 6.26312 6.50314 6.66790 7.16546 7.34445 8.83748 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.004846 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.325257 B = 5776.393719 C = 6571.016217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.223 3.777 3 H 0.009 0.991 4 C -0.546 4.546 5 H 0.067 0.933 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.980 3.020 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.263 1.263 12 O -0.361 6.361 13 C 0.521 3.479 14 O -0.529 6.529 15 C -0.306 4.306 16 C 0.139 3.861 17 N -0.357 5.357 18 C 0.087 3.913 19 N -0.311 5.311 20 C 0.138 3.862 21 C 0.015 3.985 22 C -0.124 4.124 23 C -0.149 4.149 24 C -0.151 4.151 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.022 0.978 28 H 0.270 0.730 29 H 0.218 0.782 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -6.688 -16.478 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.027 0.973 4 C -0.583 4.583 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.804 3.196 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.188 1.188 12 O -0.278 6.278 13 C 0.369 3.631 14 O -0.422 6.422 15 C -0.318 4.318 16 C -0.014 4.014 17 N -0.134 5.134 18 C -0.052 4.052 19 N -0.132 5.132 20 C -0.029 4.029 21 C 0.012 3.988 22 C -0.182 4.182 23 C -0.207 4.207 24 C -0.208 4.208 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.234 0.766 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.186 -6.634 -17.590 19.501 hybrid contribution -0.254 0.081 1.833 1.853 sum 4.932 -6.553 -15.756 17.763 Atomic orbital electron populations 1.21968 0.96985 1.00199 1.00669 1.20264 0.91747 0.92142 0.78919 0.97336 1.21267 1.33255 1.13862 0.89957 0.91444 1.25794 0.94775 0.95664 1.02034 1.70019 1.36648 1.23662 1.25128 0.85274 0.78707 0.78698 0.76960 1.19488 1.20410 1.18755 1.86497 1.76840 1.43319 1.21151 1.20493 0.74059 0.84926 0.83638 1.90538 1.50423 1.16742 1.84482 1.19538 1.23223 0.94167 0.94912 1.23618 0.92213 0.97615 0.87994 1.48757 1.47506 1.07498 1.09640 1.22463 1.04072 0.78464 1.00190 1.77073 1.26494 0.88118 1.21508 1.22559 0.94177 0.96833 0.89319 1.19054 0.97437 0.84874 0.97394 1.21726 1.00815 1.02161 0.93477 1.22073 0.93965 1.01131 1.03493 1.22085 0.98110 1.00432 1.00214 0.93740 0.90240 0.95857 0.92113 0.76562 0.88602 0.86042 0.88005 0.92393 0.90632 0.92656 0.91333 0.90786 0.93434 0.93665 0.90670 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.28 9.33 71.98 0.67 -6.60 16 2 C 0.22 12.25 2.56 29.85 0.08 12.33 16 3 H 0.01 0.54 7.16 -2.39 -0.02 0.53 16 4 C -0.55 -30.82 8.90 25.60 0.23 -30.59 16 5 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -52.66 11.32 21.45 0.24 -52.41 16 8 Si 0.98 42.62 29.54 68.60 2.03 44.64 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 12 O -0.36 -17.56 9.70 -56.70 -0.55 -18.11 16 13 C 0.52 23.13 7.66 70.20 0.54 23.67 16 14 O -0.53 -25.21 9.26 19.75 0.18 -25.03 16 15 C -0.31 -10.95 5.96 -20.16 -0.12 -11.07 16 16 C 0.14 3.77 11.34 84.30 0.96 4.72 16 17 N -0.36 -8.31 3.98 -367.75 -1.46 -9.78 16 18 C 0.09 0.95 11.44 127.77 1.46 2.41 16 19 N -0.31 -9.10 11.79 -46.65 -0.55 -9.65 16 20 C 0.14 4.56 5.64 43.53 0.25 4.80 16 21 C 0.01 0.44 0.75 -52.93 -0.04 0.40 16 22 C -0.12 -3.00 7.96 71.98 0.57 -2.43 16 23 C -0.15 -4.67 8.27 71.98 0.60 -4.07 16 24 C -0.15 -4.88 8.21 71.98 0.59 -4.29 16 25 H 0.04 2.15 8.14 -2.39 -0.02 2.14 16 26 H 0.08 4.41 6.07 -2.39 -0.01 4.40 16 27 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.22 4.55 8.06 -2.91 -0.02 4.53 16 30 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 2.65 4.70 -2.38 -0.01 2.64 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.59 4.58 -2.38 -0.01 2.58 16 Total: -1.00 -70.16 334.62 7.13 -63.03 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.02 Total: 16.64 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 6.22 Total: -9.33 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.77 Total: -71.84 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.37 Total: -43.14 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -70.16 7.13 -63.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128746046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.202 kcal (2) G-P(sol) polarization free energy of solvation -70.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds