Wall clock time and date at job start Tue Mar 31 2020 01:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.53624 * 2 1 4 4 C 1.51585 * 110.59901 * 237.16828 * 2 1 3 5 5 O 1.21233 * 127.15691 * 61.35606 * 4 2 1 6 6 N 1.34762 * 105.68548 * 241.32268 * 4 2 1 7 7 C 1.46497 * 124.17919 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47604 * 90.02104 * 7 6 4 9 9 C 1.53002 * 109.47002 * 300.00665 * 8 7 6 10 10 C 1.53005 * 109.46739 * 59.99994 * 8 7 6 11 11 C 1.50694 * 109.47629 * 179.97438 * 8 7 6 12 12 H 1.08000 * 119.99999 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00279 * 179.97438 * 11 8 7 14 14 N 1.31515 * 119.99909 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 120.00283 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46582 * 90.00331 * 15 13 11 17 17 H 1.48493 * 109.47376 * 210.00560 * 15 13 11 18 18 H 1.48505 * 109.46957 * 330.01029 * 15 13 11 19 19 C 1.33792 * 111.64692 * 359.97438 * 6 4 2 20 20 O 1.21541 * 123.77082 * 179.97438 * 19 6 4 21 21 N 1.34867 * 112.50101 * 0.08951 * 19 6 4 22 22 C 1.46497 * 126.87431 * 179.97438 * 21 19 6 23 23 C 1.52998 * 117.49764 * 8.53515 * 22 21 19 24 24 C 1.52994 * 60.00046 * 252.50703 * 23 22 21 25 25 H 1.08998 * 109.47363 * 179.29802 * 1 2 3 26 26 H 1.09005 * 109.46883 * 299.30148 * 1 2 3 27 27 H 1.09005 * 109.46692 * 59.29910 * 1 2 3 28 28 H 1.09003 * 109.47289 * 210.02297 * 7 6 4 29 29 H 1.09000 * 109.47101 * 330.02406 * 7 6 4 30 30 H 1.08994 * 109.47420 * 59.99810 * 9 8 7 31 31 H 1.09004 * 109.46846 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.46896 * 299.99205 * 9 8 7 33 33 H 1.09003 * 109.47068 * 60.00473 * 10 8 7 34 34 H 1.09004 * 109.47174 * 180.02562 * 10 8 7 35 35 H 1.08994 * 109.47558 * 300.00113 * 10 8 7 36 36 H 0.97004 * 119.99957 * 179.97438 * 14 13 11 37 37 H 1.09000 * 115.54973 * 154.23556 * 22 21 19 38 38 H 1.09010 * 117.49727 * 359.97438 * 23 22 21 39 39 H 1.08997 * 117.50330 * 145.01589 * 23 22 21 40 40 H 1.09004 * 117.49620 * 252.50876 * 24 23 22 41 41 H 1.09002 * 117.51972 * 107.48197 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7693 -1.1923 5 8 1.8874 -0.5168 -2.3649 6 7 2.7743 -1.7919 -0.6776 7 6 3.4714 -2.7973 -1.4834 8 6 4.8990 -2.3249 -1.7653 9 6 4.8562 -0.9996 -2.5287 10 6 5.6415 -2.1275 -0.4421 11 6 5.6163 -3.3594 -2.5937 12 1 5.1049 -4.2634 -2.8899 13 6 6.9250 -3.1515 -2.9744 14 7 7.5476 -2.0505 -2.6141 15 14 7.8144 -4.4342 -4.0006 16 1 7.6096 -4.1434 -5.4424 17 1 9.2659 -4.3976 -3.6895 18 1 7.2744 -5.7813 -3.6858 19 6 2.7650 -1.7756 0.6601 20 8 3.3361 -2.5973 1.3499 21 7 2.0490 -0.7471 1.1587 22 6 1.8308 -0.4317 2.5726 23 6 2.6314 -1.2272 3.6056 24 6 1.1338 -1.4878 3.4326 25 1 -0.3634 -1.0276 -0.0126 26 1 -0.3633 0.5030 0.8962 27 1 -0.3633 0.5247 -0.8837 28 1 3.5019 -3.7415 -0.9396 29 1 2.9425 -2.9380 -2.4261 30 1 4.3377 -0.2515 -1.9291 31 1 5.8733 -0.6627 -2.7291 32 1 4.3273 -1.1402 -3.4713 33 1 5.6720 -3.0717 0.1017 34 1 6.6585 -1.7904 -0.6429 35 1 5.1229 -1.3794 0.1574 36 1 8.4685 -1.9043 -2.8816 37 1 1.6228 0.6151 2.7941 38 1 3.3203 -1.9855 3.2331 39 1 2.9504 -0.7038 4.5069 40 1 0.4675 -1.1359 4.2202 41 1 0.8372 -2.4172 2.9464 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420076076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:07 Heat of formation + Delta-G solvation = -7.745703 kcal Electronic energy + Delta-G solvation = -23636.169739 eV Core-core repulsion = 20325.478129 eV Total energy + Delta-G solvation = -3310.691610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.13072 -38.52916 -37.26008 -35.82122 -35.74766 -33.40076 -31.04042 -30.16104 -26.59124 -25.63466 -25.14482 -24.26812 -23.04764 -22.40512 -21.34560 -19.77098 -18.65182 -17.08667 -16.76545 -16.04861 -15.90752 -15.74948 -14.86472 -14.62323 -14.46574 -14.24788 -13.76118 -13.29153 -13.20143 -12.77365 -12.64129 -12.50163 -12.11355 -12.05226 -11.57422 -11.23714 -11.17526 -11.10007 -10.72644 -10.66694 -10.57128 -10.28050 -10.24177 -10.16530 -9.95920 -9.55540 -9.41973 -8.78514 -8.72770 -8.51305 -8.30821 -5.94855 -4.06193 2.00622 2.34521 3.19793 3.32142 3.36269 3.38824 3.42399 3.85923 4.23709 4.44251 4.59786 4.74766 4.81887 4.93099 5.00604 5.25280 5.31267 5.42958 5.55422 5.61340 5.76687 5.86807 5.95322 6.10885 6.23142 6.30993 6.42327 6.48373 6.71425 6.88035 7.00916 7.12241 7.17090 7.50407 7.58739 7.70332 7.75552 7.80260 8.13098 8.19533 8.43990 8.52615 8.93326 9.58776 11.06216 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025727 B = 0.005537 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.110072 B = 5056.118784 C = 5675.425622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.120 0.880 4 C 0.524 3.476 5 O -0.467 6.467 6 N -0.562 5.562 7 C 0.128 3.872 8 C 0.054 3.946 9 C -0.123 4.123 10 C -0.119 4.119 11 C -0.506 4.506 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.884 5.884 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.703 3.297 20 O -0.532 6.532 21 N -0.606 5.606 22 C 0.109 3.891 23 C -0.184 4.184 24 C -0.192 4.192 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.080 0.920 30 H -0.002 1.002 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.000 1.000 36 H 0.259 0.741 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 5.831 9.774 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 H 0.137 0.863 4 C 0.310 3.690 5 O -0.337 6.337 6 N -0.305 5.305 7 C 0.009 3.991 8 C 0.053 3.947 9 C -0.181 4.181 10 C -0.177 4.177 11 C -0.545 4.545 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.522 5.522 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.406 3.594 20 O -0.405 6.405 21 N -0.344 5.344 22 C 0.005 3.995 23 C -0.222 4.222 24 C -0.231 4.231 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.017 0.983 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.020 0.980 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.089 5.555 9.535 17.120 hybrid contribution 0.555 -0.558 -0.550 0.960 sum -12.533 4.997 8.984 16.210 Atomic orbital electron populations 1.21886 0.91182 1.03517 1.03645 1.22088 0.97272 0.98173 0.84150 0.86276 1.20616 0.77705 0.80997 0.89670 1.90779 1.57572 1.68790 1.16531 1.46602 1.47737 1.28875 1.07298 1.22240 0.95310 0.88641 0.92942 1.18473 0.87802 0.94457 0.93935 1.21777 1.02373 0.96313 0.97589 1.21727 1.02627 0.97833 0.95486 1.20916 0.97099 1.03890 1.32576 0.92500 1.24875 0.97270 0.95447 0.95833 1.69836 1.11699 1.25090 1.45569 0.86567 0.78833 0.81946 0.80471 1.20725 1.21275 1.19913 1.15976 0.79372 0.81964 0.82063 1.90861 1.47748 1.41350 1.60563 1.47119 1.53698 1.28996 1.04600 1.21227 1.06289 0.96506 0.75446 1.23704 0.95528 1.03951 0.99006 1.23410 0.95940 1.01147 1.02609 0.91736 0.90724 0.90065 0.90000 0.90182 0.98278 0.89903 0.95166 0.95069 0.90192 0.98049 0.93046 0.84946 0.85111 0.88331 0.88253 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.46 37.16 0.35 -0.99 16 2 C 0.09 1.14 4.04 -68.20 -0.28 0.87 16 3 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.52 9.10 5.99 -10.56 -0.06 9.04 16 5 O -0.47 -9.17 16.87 5.60 0.09 -9.08 16 6 N -0.56 -10.78 2.13 -120.63 -0.26 -11.04 16 7 C 0.13 2.78 4.67 -4.05 -0.02 2.76 16 8 C 0.05 1.35 0.57 -155.66 -0.09 1.27 16 9 C -0.12 -3.08 7.26 37.16 0.27 -2.81 16 10 C -0.12 -3.03 7.12 37.16 0.26 -2.76 16 11 C -0.51 -13.70 8.01 -34.44 -0.28 -13.98 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 13 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 14 N -0.88 -24.74 9.35 55.43 0.52 -24.22 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.70 12.85 6.66 -87.71 -0.58 12.27 16 20 O -0.53 -11.01 13.24 5.33 0.07 -10.93 16 21 N -0.61 -8.47 3.09 -164.72 -0.51 -8.98 16 22 C 0.11 1.18 6.83 -67.93 -0.46 0.72 16 23 C -0.18 -2.17 9.84 -26.74 -0.26 -2.44 16 24 C -0.19 -1.95 10.40 -26.74 -0.28 -2.23 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.79 7.86 -51.93 -0.41 1.38 16 29 H 0.08 1.71 8.00 -51.93 -0.42 1.29 16 30 H 0.00 -0.04 6.19 -51.93 -0.32 -0.36 16 31 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 35 H 0.00 0.01 6.17 -51.93 -0.32 -0.31 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.13 2.05 5.52 -51.92 -0.29 1.76 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -30.82 324.87 -7.87 -38.69 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.15 Total: 0.99 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.52 Total: 3.45 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.25 Total: -44.24 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.16 Total: -20.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.82 -7.87 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420076076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.946 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds