Wall clock time and date at job start Tue Mar 31 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.65724 * 2 1 4 4 C 1.51593 * 110.59444 * 122.90842 * 2 1 3 5 5 O 1.21226 * 127.15839 * 298.56455 * 4 2 1 6 6 N 1.34769 * 105.67880 * 118.30311 * 4 2 1 7 7 C 1.46506 * 124.17478 * 180.25994 * 6 4 2 8 8 C 1.53002 * 109.47009 * 89.97281 * 7 6 4 9 9 C 1.52998 * 109.47173 * 300.00338 * 8 7 6 10 10 C 1.53006 * 109.46831 * 60.00205 * 8 7 6 11 11 C 1.50693 * 109.46998 * 179.97438 * 8 7 6 12 12 H 1.08001 * 119.99992 * 1.20828 * 11 8 7 13 13 C 1.37879 * 119.99982 * 181.20238 * 11 8 7 14 14 N 1.31515 * 120.00165 * 194.17608 * 13 11 8 15 15 Si 1.86796 * 119.99860 * 14.17897 * 13 11 8 16 16 H 1.48507 * 109.47368 * 84.53547 * 15 13 11 17 17 H 1.48500 * 109.47006 * 204.53220 * 15 13 11 18 18 H 1.48496 * 109.47151 * 324.53506 * 15 13 11 19 19 C 1.33791 * 111.64833 * 0.22560 * 6 4 2 20 20 O 1.21540 * 123.77181 * 180.02562 * 19 6 4 21 21 N 1.34525 * 112.45550 * 359.97438 * 19 6 4 22 22 C 1.46503 * 126.68534 * 179.97438 * 21 19 6 23 23 C 1.52991 * 117.50222 * 8.77326 * 22 21 19 24 24 C 1.52993 * 117.50127 * 300.11036 * 22 21 19 25 25 H 1.08995 * 109.47083 * 298.54267 * 1 2 3 26 26 H 1.09003 * 109.46986 * 58.54510 * 1 2 3 27 27 H 1.09002 * 109.46950 * 178.54067 * 1 2 3 28 28 H 1.08989 * 109.47111 * 209.97605 * 7 6 4 29 29 H 1.08997 * 109.46741 * 329.97665 * 7 6 4 30 30 H 1.09002 * 109.47190 * 69.50981 * 9 8 7 31 31 H 1.09003 * 109.46640 * 189.50658 * 9 8 7 32 32 H 1.09001 * 109.47052 * 309.50349 * 9 8 7 33 33 H 1.09006 * 109.46866 * 59.99731 * 10 8 7 34 34 H 1.08994 * 109.46857 * 180.02562 * 10 8 7 35 35 H 1.08995 * 109.47132 * 300.00285 * 10 8 7 36 36 H 0.97000 * 120.00179 * 180.02562 * 14 13 11 37 37 H 1.09005 * 115.54852 * 154.44487 * 22 21 19 38 38 H 1.09003 * 117.50001 * 0.02562 * 23 22 21 39 39 H 1.08997 * 117.49994 * 145.01900 * 23 22 21 40 40 H 1.08997 * 117.50433 * 214.98018 * 24 22 21 41 41 H 1.09005 * 117.49913 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0633 -0.7710 1.1914 5 8 1.8884 -0.5193 2.3642 6 7 2.7673 -1.7977 0.6752 7 6 3.4577 -2.8089 1.4797 8 6 2.5075 -3.9754 1.7578 9 6 1.2834 -3.4653 2.5207 10 6 2.0605 -4.5960 0.4326 11 6 3.2179 -5.0158 2.5847 12 1 4.2382 -4.8517 2.8987 13 6 2.5654 -6.1771 2.9406 14 7 3.0655 -6.9514 3.8786 15 14 0.9710 -6.6506 2.0903 16 1 1.2779 -7.3672 0.8263 17 1 0.1788 -7.5359 2.9814 18 1 0.1888 -5.4253 1.7873 19 6 2.7572 -1.7801 -0.6625 20 8 3.3225 -2.6048 -1.3534 21 7 2.0503 -0.7480 -1.1574 22 6 1.8364 -0.4319 -2.5719 23 6 2.2954 -1.4641 -3.6037 24 6 3.0734 -0.1575 -3.4294 25 1 -0.3633 0.4910 0.9027 26 1 -0.3633 0.5363 -0.8767 27 1 -0.3633 -1.0274 -0.0262 28 1 4.3298 -3.1722 0.9362 29 1 3.7761 -2.3667 2.4237 30 1 0.6778 -2.8432 1.8616 31 1 0.6911 -4.3130 2.8656 32 1 1.6090 -2.8767 3.3783 33 1 2.9328 -4.9594 -0.1109 34 1 1.3833 -5.4267 0.6306 35 1 1.5470 -3.8437 -0.1660 36 1 2.6066 -7.7686 4.1287 37 1 0.9331 0.1358 -2.7953 38 1 2.7561 -2.3786 -3.2302 39 1 1.6943 -1.5753 -4.5061 40 1 2.9839 0.5904 -4.2172 41 1 4.0464 -0.2116 -2.9411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420076077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:11 Heat of formation + Delta-G solvation = 11.810299 kcal Electronic energy + Delta-G solvation = -23835.293888 eV Core-core repulsion = 20525.450290 eV Total energy + Delta-G solvation = -3309.843598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.31032 -38.68256 -37.44859 -36.11541 -35.91132 -33.50873 -31.58359 -30.28836 -27.08641 -26.28827 -25.00665 -24.39486 -23.28583 -22.53953 -21.38580 -19.98873 -18.90978 -17.21444 -16.96124 -16.23871 -16.02862 -15.97472 -15.19722 -14.82680 -14.55677 -14.33212 -13.93072 -13.48391 -13.24864 -13.10069 -12.79470 -12.73210 -12.50778 -12.13029 -12.04594 -11.88920 -11.66660 -11.29294 -11.03477 -10.95414 -10.67685 -10.46014 -10.09954 -10.07837 -9.89505 -9.68689 -9.40200 -9.06518 -8.75271 -8.49666 -8.39169 -6.11769 -4.08457 1.85767 2.21178 3.05606 3.21729 3.30430 3.39267 3.42893 3.75772 4.09423 4.41022 4.51990 4.64743 4.72321 4.80762 4.90223 5.16168 5.20531 5.34514 5.48966 5.53740 5.63806 5.82416 5.85368 5.86420 5.94848 6.10641 6.14994 6.28165 6.45501 6.51324 6.58909 6.62994 6.69739 6.79515 7.05266 7.22893 7.40983 7.53455 7.65971 7.76665 8.35227 8.46308 8.90949 9.53129 11.01109 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.006367 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.094738 B = 4396.519047 C = 4838.578848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.092 3.908 3 H 0.121 0.879 4 C 0.522 3.478 5 O -0.464 6.464 6 N -0.567 5.567 7 C 0.138 3.862 8 C 0.026 3.974 9 C -0.136 4.136 10 C -0.136 4.136 11 C -0.511 4.511 12 H 0.077 0.923 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.885 3.115 16 H -0.285 1.285 17 H -0.305 1.305 18 H -0.251 1.251 19 C 0.701 3.299 20 O -0.532 6.532 21 N -0.604 5.604 22 C 0.106 3.894 23 C -0.185 4.185 24 C -0.191 4.191 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.013 0.987 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.023 0.977 36 H 0.264 0.736 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 16.419 -12.884 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 H 0.139 0.861 4 C 0.308 3.692 5 O -0.333 6.333 6 N -0.311 5.311 7 C 0.019 3.981 8 C 0.025 3.975 9 C -0.193 4.193 10 C -0.193 4.193 11 C -0.549 4.549 12 H 0.095 0.905 13 C -0.124 4.124 14 N -0.528 5.528 15 Si 0.718 3.282 16 H -0.213 1.213 17 H -0.234 1.234 18 H -0.177 1.177 19 C 0.404 3.596 20 O -0.406 6.406 21 N -0.342 5.342 22 C 0.003 3.997 23 C -0.222 4.222 24 C -0.230 4.230 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.779 15.897 -12.542 20.805 hybrid contribution -0.864 -0.415 -0.461 1.063 sum -5.643 15.482 -13.002 20.990 Atomic orbital electron populations 1.21918 0.91054 1.03937 1.03758 1.22094 0.97534 0.97915 0.83968 0.86137 1.20686 0.77782 0.80955 0.89751 1.90789 1.56476 1.69628 1.16443 1.46674 1.49048 1.27926 1.07422 1.22026 0.95532 0.86812 0.93715 1.18835 0.92842 0.92763 0.93087 1.22264 0.98029 0.99743 0.99292 1.22272 1.00249 0.98728 0.98076 1.20642 1.00904 1.01163 1.32220 0.90528 1.24914 0.97141 0.96384 0.93981 1.69946 1.40655 1.14259 1.27905 0.87296 0.84625 0.77869 0.78438 1.21319 1.23420 1.17737 1.15923 0.79853 0.81745 0.82038 1.90873 1.48464 1.40829 1.60405 1.47057 1.54021 1.28351 1.04772 1.21266 0.98446 1.04635 0.75376 1.23724 1.03127 0.96368 0.98991 1.23427 0.96996 1.00015 1.02566 0.89838 0.90768 0.91338 0.89222 0.89289 0.96770 0.92758 0.92922 0.92426 0.94550 0.95790 0.92576 0.84877 0.85082 0.88317 0.88152 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.47 37.16 0.35 -1.04 16 2 C 0.09 1.05 4.04 -68.20 -0.28 0.77 16 3 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.52 8.32 6.17 -10.55 -0.07 8.25 16 5 O -0.46 -8.45 16.69 5.60 0.09 -8.35 16 6 N -0.57 -10.04 2.16 -120.73 -0.26 -10.30 16 7 C 0.14 2.83 4.66 -4.04 -0.02 2.81 16 8 C 0.03 0.62 0.57 -155.66 -0.09 0.53 16 9 C -0.14 -3.10 6.58 37.16 0.24 -2.86 16 10 C -0.14 -3.16 6.57 37.16 0.24 -2.91 16 11 C -0.51 -14.13 8.62 -34.44 -0.30 -14.42 16 12 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 13 C 0.08 2.25 5.32 -17.82 -0.09 2.16 16 14 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 15 Si 0.88 22.40 22.79 -169.99 -3.87 18.52 16 16 H -0.29 -7.23 7.10 56.52 0.40 -6.83 16 17 H -0.31 -7.79 7.11 56.52 0.40 -7.38 16 18 H -0.25 -6.00 4.65 56.52 0.26 -5.73 16 19 C 0.70 11.82 6.64 -88.02 -0.58 11.24 16 20 O -0.53 -10.24 13.21 5.33 0.07 -10.17 16 21 N -0.60 -7.70 3.08 -164.84 -0.51 -8.21 16 22 C 0.11 1.05 6.83 -67.94 -0.46 0.59 16 23 C -0.18 -2.00 9.83 -26.70 -0.26 -2.27 16 24 C -0.19 -1.80 10.40 -26.70 -0.28 -2.08 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.84 7.86 -51.94 -0.41 1.44 16 29 H 0.09 1.80 8.00 -51.93 -0.42 1.39 16 30 H 0.01 0.28 6.99 -51.93 -0.36 -0.08 16 31 H 0.05 1.30 4.30 -51.93 -0.22 1.08 16 32 H 0.05 1.21 7.71 -51.93 -0.40 0.80 16 33 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 34 H 0.04 0.88 2.26 -51.93 -0.12 0.76 16 35 H 0.02 0.51 6.17 -51.93 -0.32 0.19 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.13 0.91 7.95 -51.93 -0.41 0.49 16 38 H 0.13 1.91 5.51 -51.93 -0.29 1.63 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -32.31 314.40 -6.56 -38.88 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.01 Total: 0.51 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.59 Total: 0.77 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.01 Total: -44.88 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.16 Total: -18.53 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -3.87 Total: 18.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.31 -6.56 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420076077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.687 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds