Wall clock time and date at job start Tue Mar 31 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.88354 * 2 1 4 4 C 1.55131 * 110.93669 * 124.06926 * 2 1 3 5 5 N 1.47428 * 104.71987 * 155.29448 * 4 2 1 6 6 C 1.34779 * 125.64549 * 155.82051 * 5 4 2 7 7 O 1.21610 * 120.00152 * 4.84705 * 6 5 4 8 8 C 1.47104 * 119.99875 * 184.85243 * 6 5 4 9 9 C 1.32091 * 118.87624 * 75.22476 * 8 6 5 10 10 C 1.50272 * 122.57477 * 180.39134 * 9 8 6 11 11 O 1.42885 * 110.09429 * 344.36217 * 10 9 8 12 12 C 1.43268 * 113.10488 * 50.52501 * 11 10 9 13 13 C 1.50414 * 118.87756 * 255.25089 * 8 6 5 14 14 C 1.47020 * 108.70128 * 335.55165 * 5 4 2 15 15 C 1.54318 * 107.27111 * 1.28881 * 14 5 4 16 16 H 1.09001 * 110.71907 * 263.82537 * 15 14 5 17 17 N 1.46500 * 110.71824 * 140.55688 * 15 14 5 18 18 C 1.36939 * 120.00161 * 86.44990 * 17 15 14 19 19 H 1.08000 * 119.99785 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00171 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99898 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00055 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47041 * 90.00443 * 22 20 18 24 24 H 1.48500 * 109.46883 * 210.00162 * 22 20 18 25 25 H 1.48496 * 109.47113 * 330.00207 * 22 20 18 26 26 H 1.09002 * 109.47027 * 183.88104 * 1 2 3 27 27 H 1.08998 * 109.47847 * 303.88508 * 1 2 3 28 28 H 1.09001 * 109.46921 * 63.89097 * 1 2 3 29 29 H 1.08997 * 110.50112 * 36.45432 * 4 2 1 30 30 H 1.09001 * 110.34342 * 274.05365 * 4 2 1 31 31 H 1.07992 * 118.71248 * 0.37619 * 9 8 6 32 32 H 1.09004 * 109.36534 * 224.16709 * 10 9 8 33 33 H 1.09000 * 109.36279 * 104.55319 * 10 9 8 34 34 H 1.09002 * 109.64477 * 171.47173 * 12 11 10 35 35 H 1.08998 * 109.63531 * 50.85385 * 12 11 10 36 36 H 1.09009 * 109.45115 * 43.28971 * 13 8 6 37 37 H 1.09000 * 109.45838 * 283.35501 * 13 8 6 38 38 H 1.09006 * 109.88015 * 120.71150 * 14 5 4 39 39 H 1.08996 * 109.87875 * 241.71460 * 14 5 4 40 40 H 0.97006 * 120.00429 * 266.45418 * 17 15 14 41 41 H 0.96995 * 120.00191 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0843 -0.8117 1.2002 5 7 3.4280 -1.2420 0.7727 6 6 4.4489 -1.5601 1.5932 7 8 4.2756 -1.5890 2.7965 8 6 5.7729 -1.8721 1.0330 9 6 6.5250 -0.8831 0.5847 10 6 7.8860 -1.1078 -0.0114 11 8 8.3545 -2.4178 0.3145 12 6 7.4005 -3.4454 0.0202 13 6 6.2236 -3.3064 0.9898 14 6 3.4679 -1.2730 -0.6966 15 6 2.0862 -0.8076 -1.2023 16 1 1.4473 -1.6632 -1.4209 17 7 2.2279 0.0500 -2.3816 18 6 2.3026 -0.5087 -3.6296 19 1 2.2566 -1.5816 -3.7445 20 6 2.4363 0.3039 -4.7470 21 7 2.4918 1.6115 -4.6070 22 14 2.5375 -0.4583 -6.4495 23 1 1.1707 -0.5887 -7.0154 24 1 3.3580 0.4093 -7.3322 25 1 3.1640 -1.8012 -6.3541 26 1 -0.3633 -1.0253 0.0696 27 1 -0.3635 0.5729 0.8531 28 1 -0.3633 0.4523 -0.9228 29 1 1.4538 -1.6783 1.3988 30 1 2.1522 -0.1799 2.0859 31 1 6.1470 0.1264 0.6488 32 1 8.5807 -0.3667 0.3840 33 1 7.8277 -1.0039 -1.0949 34 1 7.8650 -4.4235 0.1456 35 1 7.0461 -3.3336 -1.0045 36 1 5.3997 -3.9359 0.6532 37 1 6.5354 -3.6193 1.9863 38 1 4.2426 -0.5982 -1.0607 39 1 3.6686 -2.2876 -1.0406 40 1 2.2688 1.0137 -2.2785 41 1 2.5856 2.1793 -5.3878 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054605621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:13 Heat of formation + Delta-G solvation = -72.426555 kcal Electronic energy + Delta-G solvation = -22541.155748 eV Core-core repulsion = 19227.659366 eV Total energy + Delta-G solvation = -3313.496382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.50822 -40.04666 -38.90265 -35.87435 -35.01578 -33.71709 -32.48049 -32.15309 -29.17959 -28.22027 -26.43544 -25.78878 -24.90430 -23.20156 -21.46454 -21.35163 -19.26070 -19.07936 -18.35589 -17.53678 -17.44744 -17.06372 -16.32747 -16.13452 -15.78696 -15.39793 -15.34042 -14.80734 -14.62875 -14.40273 -14.12064 -13.83347 -13.72821 -13.54328 -13.44637 -13.02992 -12.88527 -12.83606 -12.54734 -12.27966 -12.17674 -12.05392 -11.97643 -11.69844 -11.43101 -11.26830 -10.96278 -10.55031 -10.13994 -9.75113 -9.06389 -7.93791 -5.23638 0.60472 1.40958 1.50905 1.51601 1.59403 1.94959 2.57184 2.86693 3.29256 3.37955 3.64822 3.69724 3.78606 3.86098 3.90405 4.18881 4.22374 4.24730 4.31911 4.40453 4.44013 4.48072 4.59798 4.61660 4.66795 4.74106 4.85271 4.87392 4.91936 5.08397 5.10582 5.14474 5.21538 5.30853 5.44708 5.47239 5.55893 6.07043 6.26403 6.37176 6.93120 7.34821 8.05468 8.29888 9.29008 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.005710 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.373925 B = 4902.073557 C = 6417.064912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 H 0.072 0.928 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.565 3.435 7 O -0.583 6.583 8 C -0.159 4.159 9 C -0.146 4.146 10 C 0.090 3.910 11 O -0.391 6.391 12 C 0.060 3.940 13 C -0.103 4.103 14 C 0.090 3.910 15 C 0.172 3.828 16 H 0.071 0.929 17 N -0.720 5.720 18 C -0.240 4.240 19 H 0.080 0.920 20 C -0.067 4.067 21 N -0.967 5.967 22 Si 0.966 3.034 23 H -0.290 1.290 24 H -0.300 1.300 25 H -0.267 1.267 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.376 0.624 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -8.086 9.274 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 H 0.090 0.910 4 C -0.008 4.008 5 N -0.337 5.337 6 C 0.355 3.645 7 O -0.464 6.464 8 C -0.162 4.162 9 C -0.165 4.165 10 C 0.014 3.986 11 O -0.310 6.310 12 C -0.016 4.016 13 C -0.141 4.141 14 C -0.035 4.035 15 C 0.061 3.939 16 H 0.089 0.911 17 N -0.359 5.359 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.260 4.260 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.192 1.192 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.208 0.792 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.328 -8.286 9.860 13.937 hybrid contribution -0.335 0.581 -1.059 1.253 sum 4.993 -7.705 8.801 12.718 Atomic orbital electron populations 1.21570 0.92186 1.02735 1.02061 1.22565 0.97632 0.98701 0.93327 0.90964 1.22419 0.82321 0.98717 0.97376 1.48607 1.12173 1.65087 1.07856 1.18612 0.84703 0.75881 0.85331 1.90754 1.84571 1.55135 1.15950 1.20854 0.93615 0.98405 1.03285 1.23555 0.97877 0.98761 0.96302 1.21637 0.91666 0.85485 0.99792 1.88087 1.41268 1.15539 1.86132 1.22822 0.88868 0.92615 0.97296 1.20976 0.99832 0.90912 1.02343 1.22999 1.01777 1.01212 0.77561 1.21413 0.92295 0.93789 0.86388 0.91149 1.42449 1.87091 1.05156 1.01192 1.19602 1.40728 0.92263 0.84588 0.90190 1.25468 1.03494 0.95737 1.01289 1.69801 1.58781 1.03524 1.29562 0.85256 0.77169 0.77651 0.80374 1.21696 1.22644 1.19212 0.91391 0.90957 0.93272 0.89837 0.90792 0.86592 0.85517 0.89846 0.85621 0.91826 0.89054 0.89511 0.92368 0.91508 0.79192 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.31 71.98 0.67 -2.60 16 2 C -0.10 -3.03 3.26 -9.33 -0.03 -3.06 16 3 H 0.07 2.33 8.00 -2.39 -0.02 2.31 16 4 C 0.11 3.20 6.36 86.93 0.55 3.76 16 5 N -0.61 -18.89 3.32 -815.62 -2.71 -21.60 16 6 C 0.56 18.73 7.09 86.57 0.61 19.35 16 7 O -0.58 -22.91 17.40 -4.06 -0.07 -22.98 16 8 C -0.16 -4.45 4.81 -18.59 -0.09 -4.54 16 9 C -0.15 -3.76 9.32 24.59 0.23 -3.53 16 10 C 0.09 1.90 7.04 71.10 0.50 2.40 16 11 O -0.39 -8.99 10.83 -148.98 -1.61 -10.61 16 12 C 0.06 1.16 6.88 72.02 0.50 1.65 16 13 C -0.10 -2.33 6.08 29.80 0.18 -2.14 16 14 C 0.09 2.94 6.19 86.73 0.54 3.48 16 15 C 0.17 6.01 3.05 46.17 0.14 6.15 16 16 H 0.07 2.44 8.02 -2.39 -0.02 2.42 16 17 N -0.72 -32.56 5.18 -317.35 -1.64 -34.20 16 18 C -0.24 -12.10 9.98 84.03 0.84 -11.26 16 19 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 20 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 21 N -0.97 -55.82 13.06 21.65 0.28 -55.54 16 22 Si 0.97 43.33 29.55 68.60 2.03 45.35 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 2.11 7.99 -2.39 -0.02 2.09 16 30 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 31 H 0.12 3.07 7.99 -2.91 -0.02 3.05 16 32 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 36 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 2.10 7.72 -2.38 -0.02 2.08 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.38 18.64 7.71 -92.70 -0.72 17.92 16 41 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -64.34 338.51 1.68 -62.66 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.30 Total: 30.38 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.11 Total: 6.53 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.07 Total: -111.34 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.68 Total: -33.59 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -64.34 1.68 -62.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054605621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.762 kcal (2) G-P(sol) polarization free energy of solvation -64.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds