Wall clock time and date at job start Tue Mar 31 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.54909 * 111.00603 * 236.11615 * 2 1 3 5 5 N 1.47523 * 104.78433 * 204.90137 * 4 2 1 6 6 C 1.36938 * 125.63741 * 204.08423 * 5 4 2 7 7 H 1.07996 * 120.00050 * 180.02562 * 6 5 4 8 8 C 1.38808 * 119.99825 * 0.04359 * 6 5 4 9 9 N 1.31618 * 120.00529 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99867 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47026 * 60.00185 * 10 8 6 12 12 H 1.48503 * 109.47286 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47188 * 300.00148 * 10 8 6 14 14 C 1.47022 * 108.71559 * 24.12363 * 5 4 2 15 15 C 1.54330 * 107.27093 * 358.93837 * 14 5 4 16 16 H 1.09006 * 110.86580 * 96.24059 * 15 14 5 17 17 N 1.46498 * 110.72074 * 219.44387 * 15 14 5 18 18 C 1.34772 * 120.00049 * 268.52038 * 17 15 14 19 19 O 1.21284 * 119.99925 * 0.02562 * 18 17 15 20 20 C 1.50694 * 120.00111 * 179.97438 * 18 17 15 21 21 C 1.53005 * 119.81152 * 250.23733 * 20 18 17 22 22 C 1.53003 * 60.65157 * 247.68684 * 21 20 18 23 23 H 1.08998 * 119.81238 * 112.31071 * 22 21 20 24 24 C 1.54485 * 118.06563 * 269.58959 * 22 21 20 25 25 O 1.44423 * 104.80200 * 86.82944 * 24 22 21 26 26 C 1.46769 * 105.42313 * 319.29131 * 25 24 22 27 27 H 1.08994 * 109.46941 * 299.30333 * 1 2 3 28 28 H 1.09004 * 109.46932 * 59.30168 * 1 2 3 29 29 H 1.09002 * 109.47107 * 179.29457 * 1 2 3 30 30 H 1.09001 * 110.36668 * 323.71926 * 4 2 1 31 31 H 1.09004 * 110.36307 * 86.04054 * 4 2 1 32 32 H 0.96998 * 120.00412 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.88478 * 239.52488 * 14 5 4 34 34 H 1.08997 * 110.01216 * 118.42984 * 14 5 4 35 35 H 0.97001 * 119.99849 * 88.52387 * 17 15 14 36 36 H 1.09000 * 117.43052 * 355.35791 * 21 20 18 37 37 H 1.08993 * 117.43452 * 140.07165 * 21 20 18 38 38 H 1.09003 * 110.36786 * 205.66093 * 24 22 21 39 39 H 1.08999 * 110.37102 * 327.99727 * 24 22 21 40 40 H 1.09005 * 110.29126 * 282.46847 * 26 25 24 41 41 H 1.08994 * 111.53882 * 159.38104 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4654 -1.5655 -1.6059 7 1 5.4139 -1.8751 -1.1925 8 6 4.2980 -1.4948 -2.9820 9 7 3.1421 -1.1175 -3.4859 10 14 5.7133 -1.9350 -4.1189 11 1 6.1215 -3.3425 -3.8790 12 1 5.2812 -1.7783 -5.5310 13 1 6.8626 -1.0338 -3.8506 14 6 3.4679 -1.2731 0.6969 15 6 2.0861 -0.8074 1.2026 16 1 1.4454 -1.6613 1.4231 17 7 2.2278 0.0502 2.3818 18 6 2.1993 -0.4907 3.6158 19 8 2.0569 -1.6877 3.7501 20 6 2.3456 0.3914 4.8288 21 6 3.6227 0.3242 5.6687 22 6 2.3040 -0.1681 6.2684 23 1 2.1668 -1.2288 6.4785 24 6 1.4329 0.8474 7.0408 25 8 0.6159 1.4768 6.0299 26 6 1.5073 1.6880 4.8833 27 1 -0.3633 0.5030 0.8961 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0127 30 1 1.4523 -1.6703 -1.4026 31 1 2.1554 -0.1714 -2.0839 32 1 3.0252 -1.0677 -4.4475 33 1 4.2425 -0.5982 1.0611 34 1 3.6670 -2.2871 1.0434 35 1 2.3420 1.0075 2.2743 36 1 4.3630 -0.4285 5.3976 37 1 4.0254 1.2639 6.0465 38 1 0.8062 0.3328 7.7692 39 1 2.0617 1.5876 7.5357 40 1 2.1518 2.5494 5.0591 41 1 0.9457 1.8157 3.9579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079734598.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:28 Heat of formation + Delta-G solvation = -19.119613 kcal Electronic energy + Delta-G solvation = -22455.239155 eV Core-core repulsion = 19144.054335 eV Total energy + Delta-G solvation = -3311.184820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90411 -39.01712 -37.39065 -34.72118 -34.06764 -32.40320 -30.78963 -29.28582 -27.41323 -25.79712 -25.65303 -24.18855 -22.78733 -21.37212 -20.29352 -20.00415 -19.14405 -17.56724 -16.86207 -16.34312 -15.74828 -15.64906 -15.05919 -14.63909 -14.50607 -14.18789 -13.87503 -13.53196 -13.24757 -12.97553 -12.80749 -12.63999 -12.22103 -11.88666 -11.58895 -11.53076 -11.36170 -11.00559 -10.98820 -10.83092 -10.71479 -10.48513 -10.30590 -10.10875 -9.98916 -9.82841 -9.64097 -9.45022 -8.74150 -8.67238 -6.85809 -5.67090 -3.08997 2.50842 3.11036 3.30761 3.40215 3.44352 3.45734 3.64809 4.10043 4.21277 4.47223 4.61026 4.68463 4.74274 5.00888 5.15239 5.31112 5.33138 5.35490 5.37761 5.42283 5.46956 5.57529 5.61837 5.74706 5.82868 5.93919 6.11185 6.14818 6.29165 6.39126 6.44516 6.53774 6.62741 6.71338 7.00618 7.47772 7.59666 7.67470 7.82763 8.31070 8.36772 9.19912 9.80398 10.44617 11.36828 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.003881 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.695234 B = 7213.729940 C = 7723.887400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 H 0.073 0.927 4 C 0.161 3.839 5 N -0.604 5.604 6 C -0.223 4.223 7 H 0.077 0.923 8 C -0.010 4.010 9 N -0.923 5.923 10 Si 0.916 3.084 11 H -0.285 1.285 12 H -0.289 1.289 13 H -0.285 1.285 14 C 0.129 3.871 15 C 0.135 3.865 16 H 0.094 0.906 17 N -0.708 5.708 18 C 0.558 3.442 19 O -0.538 6.538 20 C -0.209 4.209 21 C -0.109 4.109 22 C -0.158 4.158 23 H 0.132 0.868 24 C 0.074 3.926 25 O -0.373 6.373 26 C 0.085 3.915 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.016 0.984 31 H 0.110 0.890 32 H 0.253 0.747 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.398 0.602 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 7.808 17.594 19.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 H 0.091 0.909 4 C 0.036 3.964 5 N -0.330 5.330 6 C -0.351 4.351 7 H 0.095 0.905 8 C -0.206 4.206 9 N -0.572 5.572 10 Si 0.746 3.254 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.212 1.212 14 C 0.002 3.998 15 C 0.030 3.970 16 H 0.112 0.888 17 N -0.358 5.358 18 C 0.343 3.657 19 O -0.415 6.415 20 C -0.212 4.212 21 C -0.146 4.146 22 C -0.176 4.176 23 H 0.150 0.850 24 C -0.003 4.003 25 O -0.292 6.292 26 C 0.009 3.991 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.232 0.768 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.461 6.970 17.445 19.102 hybrid contribution 1.048 0.001 -0.712 1.266 sum -2.414 6.971 16.734 18.288 Atomic orbital electron populations 1.21640 0.95095 1.01669 1.00763 1.22935 0.95123 0.99667 0.96796 0.90870 1.22014 0.84084 0.96042 0.94302 1.44447 1.10553 1.79169 0.98808 1.19041 0.90967 1.37929 0.87188 0.90537 1.24778 0.97326 1.01912 0.96537 1.69755 1.22425 1.53820 1.11168 0.86134 0.81152 0.78239 0.79864 1.21189 1.21528 1.21172 1.21592 0.93836 0.97927 0.86482 1.22214 0.97964 0.93582 0.83195 0.88845 1.45958 1.73255 1.11236 1.05315 1.18995 0.76073 0.87473 0.83127 1.90710 1.49349 1.15166 1.86228 1.23298 1.05114 0.99670 0.93135 1.23176 0.90021 1.03509 0.97927 1.24350 0.99657 1.01787 0.91838 0.85037 1.22933 0.93079 0.93355 0.90931 1.89551 1.33973 1.80735 1.24971 1.23251 0.91566 0.93379 0.90912 0.93700 0.92391 0.92779 0.96560 0.87220 0.93623 0.95707 0.95652 0.76770 0.87103 0.87645 0.88207 0.91659 0.90703 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.29 37.16 0.35 -1.72 16 2 C -0.12 -2.27 3.26 -88.47 -0.29 -2.56 16 3 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 4 C 0.16 3.83 5.36 -2.47 -0.01 3.82 16 5 N -0.60 -15.60 3.40 -169.99 -0.58 -16.18 16 6 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 10 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.13 2.83 6.99 -3.06 -0.02 2.81 16 15 C 0.13 2.47 2.79 -66.09 -0.18 2.29 16 16 H 0.09 1.87 7.44 -51.93 -0.39 1.48 16 17 N -0.71 -10.43 4.95 -52.03 -0.26 -10.68 16 18 C 0.56 8.57 7.44 -10.99 -0.08 8.49 16 19 O -0.54 -10.46 16.49 5.55 0.09 -10.37 16 20 C -0.21 -2.37 2.80 -154.09 -0.43 -2.80 16 21 C -0.11 -0.98 9.87 -26.73 -0.26 -1.25 16 22 C -0.16 -1.58 6.90 -89.05 -0.61 -2.20 16 23 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 24 C 0.07 0.64 7.45 37.94 0.28 0.92 16 25 O -0.37 -4.26 11.72 -35.23 -0.41 -4.67 16 26 C 0.09 0.83 7.21 37.94 0.27 1.10 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.02 0.42 8.03 -51.93 -0.42 0.00 16 31 H 0.11 2.92 5.88 -51.93 -0.31 2.62 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.03 0.54 8.03 -51.93 -0.42 0.12 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 4.76 8.17 -40.82 -0.33 4.43 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -32.82 333.44 -8.29 -41.11 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.45 Total: 2.72 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.25 Total: 2.10 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.28 Total: -52.94 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.32 Total: -15.04 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.82 -8.29 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079734598.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.993 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds