Wall clock time and date at job start Tue Mar 31 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 C 1.52998 * 109.47169 * 119.99329 * 2 1 3 5 5 C 1.50697 * 109.47505 * 295.00341 * 4 2 1 6 6 O 1.21276 * 120.00038 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99888 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00044 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47661 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47519 * 180.02562 * 9 8 7 11 11 N 1.46494 * 109.46972 * 179.97438 * 10 9 8 12 12 C 1.36946 * 120.00064 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99447 * 0.02562 * 12 11 10 14 14 C 1.38802 * 120.00054 * 180.02562 * 12 11 10 15 15 N 1.31616 * 120.00542 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99849 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47171 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47317 * 119.99977 * 16 14 12 19 19 H 1.48504 * 109.47436 * 239.99953 * 16 14 12 20 20 C 1.50697 * 109.47600 * 239.99946 * 2 1 3 21 21 C 1.34515 * 125.79159 * 119.99321 * 20 2 1 22 22 C 1.41385 * 106.84000 * 180.02562 * 21 20 2 23 23 C 1.34507 * 106.84104 * 0.02562 * 22 21 20 24 24 O 1.34300 * 108.42410 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.46496 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47143 * 300.00039 * 1 2 3 27 27 H 1.09003 * 109.47255 * 60.00390 * 1 2 3 28 28 H 1.09003 * 109.46867 * 55.01102 * 4 2 1 29 29 H 1.09002 * 109.47002 * 175.00309 * 4 2 1 30 30 H 0.96999 * 120.00051 * 0.02562 * 7 5 4 31 31 H 1.08997 * 109.47172 * 300.00679 * 8 7 5 32 32 H 1.09002 * 109.46930 * 60.00321 * 8 7 5 33 33 H 1.09003 * 109.46867 * 300.00772 * 9 8 7 34 34 H 1.09002 * 109.47002 * 59.99979 * 9 8 7 35 35 H 1.08997 * 109.47239 * 300.00246 * 10 9 8 36 36 H 1.09000 * 109.46511 * 60.00104 * 10 9 8 37 37 H 0.96997 * 120.00362 * 0.02562 * 11 10 9 38 38 H 0.97000 * 120.00678 * 179.97438 * 15 14 12 39 39 H 1.08001 * 126.57671 * 0.29417 * 21 20 2 40 40 H 1.08003 * 126.57418 * 180.02562 * 22 21 20 41 41 H 1.08001 * 125.78847 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9845 -0.3917 3.7002 8 6 1.5974 0.3652 4.8933 9 6 2.1073 -0.3559 6.1426 10 6 1.7025 0.4342 7.3886 11 7 2.1902 -0.2567 8.5848 12 6 1.9462 0.2680 9.8259 13 1 1.3938 1.1910 9.9229 14 6 2.4088 -0.3863 10.9593 15 7 3.0824 -1.5109 10.8411 16 14 2.0753 0.3291 12.6523 17 1 1.3034 1.5900 12.5136 18 1 1.2925 -0.6441 13.4556 19 1 3.3645 0.6098 13.3339 20 6 2.0324 -0.7104 -1.2304 21 6 2.8090 -0.1719 -2.1877 22 6 3.0379 -1.1848 -3.1472 23 6 2.3872 -2.2814 -2.7192 24 8 1.7801 -1.9883 -1.5576 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6055 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 2.4884 -1.2155 3.7908 31 1 2.0326 1.3635 4.8473 32 1 0.5111 0.4441 4.9369 33 1 1.6724 -1.3544 6.1886 34 1 3.1936 -0.4346 6.0988 35 1 2.1370 1.4328 7.3427 36 1 0.6161 0.5124 7.4321 37 1 2.6866 -1.0854 8.4977 38 1 3.4060 -1.9680 11.6331 39 1 3.1886 0.8388 -2.2156 40 1 3.6231 -1.0951 -4.0506 41 1 2.3584 -3.2359 -3.2236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171374021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:45 Heat of formation + Delta-G solvation = -29.050629 kcal Electronic energy + Delta-G solvation = -20605.894853 eV Core-core repulsion = 17294.279392 eV Total energy + Delta-G solvation = -3311.615461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.87148 -39.92713 -36.33025 -35.24493 -34.33201 -33.20782 -32.04478 -29.98867 -29.03497 -27.95365 -25.16138 -23.39065 -22.42845 -22.01769 -21.23663 -20.53507 -19.91550 -17.75390 -17.21074 -16.74087 -16.29469 -16.08524 -15.81993 -15.02316 -14.82791 -14.57068 -14.22938 -13.51876 -13.43614 -13.26120 -13.10834 -13.01730 -12.92544 -12.75985 -12.33051 -11.68162 -11.67457 -11.55459 -11.26455 -10.97164 -10.93514 -10.78412 -10.63307 -10.20730 -10.06966 -9.85238 -9.69870 -9.06644 -8.89648 -8.75001 -6.94663 -5.78484 -3.07489 1.44412 2.32825 2.54663 2.69685 3.13499 3.42878 3.48674 3.50945 4.28487 4.42232 4.58128 4.64292 4.73343 4.76713 4.90129 5.08941 5.16979 5.28566 5.33283 5.35907 5.50357 5.56434 5.58945 5.61677 5.69844 5.81493 5.85722 5.96400 6.04980 6.13724 6.18047 6.20425 6.30742 6.45213 6.77509 6.81779 6.86207 7.43235 7.69635 8.14246 8.40510 9.51680 10.08747 10.43294 11.44582 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.050147 B = 0.002122 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.220228 B =13194.113727 C =13498.768189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.008 3.992 3 H 0.108 0.892 4 C -0.140 4.140 5 C 0.513 3.487 6 O -0.540 6.540 7 N -0.727 5.727 8 C 0.122 3.878 9 C -0.138 4.138 10 C 0.156 3.844 11 N -0.734 5.734 12 C -0.239 4.239 13 H 0.072 0.928 14 C -0.016 4.016 15 N -0.934 5.934 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.002 4.002 21 C -0.212 4.212 22 C -0.214 4.214 23 C -0.046 4.046 24 O -0.173 6.173 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.401 0.599 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -1.395 -28.513 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 H 0.126 0.874 4 C -0.180 4.180 5 C 0.299 3.701 6 O -0.418 6.418 7 N -0.378 5.378 8 C -0.002 4.002 9 C -0.176 4.176 10 C 0.028 3.972 11 N -0.378 5.378 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.212 4.212 15 N -0.583 5.583 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.052 4.052 21 C -0.231 4.231 22 C -0.233 4.233 23 C -0.114 4.114 24 O -0.069 6.069 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.235 0.765 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.441 -0.721 -28.265 28.311 hybrid contribution 0.567 -0.384 0.726 0.998 sum -0.874 -1.105 -27.539 27.575 Atomic orbital electron populations 1.21989 0.92959 1.02376 1.03812 1.19518 0.97278 0.97952 0.86308 0.87366 1.21770 1.03386 1.00644 0.92164 1.20487 0.79337 0.85682 0.84588 1.90679 1.39869 1.24597 1.86640 1.46109 1.57695 1.27949 1.06091 1.21366 1.00382 0.95405 0.83028 1.21947 1.01590 1.00192 0.93882 1.20520 0.96719 0.94473 0.85484 1.42349 1.66761 1.28006 1.00717 1.19298 1.28940 1.05171 0.83645 0.91016 1.24760 1.00942 0.97488 0.97962 1.69666 1.42386 1.17935 1.28327 0.86090 0.77368 0.78108 0.84478 1.20497 1.21842 1.21839 1.22500 1.01138 0.82585 0.98964 1.21638 1.04151 1.01365 0.95979 1.21836 1.05484 0.93621 1.02334 1.24032 0.99321 1.00932 0.87100 1.84010 1.59438 1.28141 1.35335 0.92676 0.89473 0.92429 0.88291 0.88461 0.76460 0.91339 0.91326 0.91300 0.91304 0.96055 0.96052 0.78307 0.93547 0.83490 0.83553 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.92 37.16 0.33 -1.14 16 2 C 0.01 0.07 2.44 -91.77 -0.22 -0.15 16 3 H 0.11 1.00 7.91 -51.93 -0.41 0.59 16 4 C -0.14 -1.17 5.16 -27.89 -0.14 -1.32 16 5 C 0.51 5.84 7.55 -10.99 -0.08 5.76 16 6 O -0.54 -7.94 13.96 5.56 0.08 -7.86 16 7 N -0.73 -7.90 5.56 -60.30 -0.33 -8.23 16 8 C 0.12 1.61 5.67 -4.04 -0.02 1.58 16 9 C -0.14 -2.07 5.44 -26.73 -0.15 -2.22 16 10 C 0.16 3.10 6.26 -4.05 -0.03 3.07 16 11 N -0.73 -18.67 5.60 -59.91 -0.34 -19.00 16 12 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 13 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 14 C -0.02 -0.46 5.50 -17.44 -0.10 -0.55 16 15 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 16 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 C 0.00 -0.01 5.83 -35.63 -0.21 -0.22 16 21 C -0.21 -1.86 10.78 -39.70 -0.43 -2.29 16 22 C -0.21 -1.65 10.91 -39.70 -0.43 -2.09 16 23 C -0.05 -0.34 12.09 29.41 0.36 0.01 16 24 O -0.17 -1.64 10.65 5.71 0.06 -1.58 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.98 5.95 -51.93 -0.31 0.67 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.40 3.40 8.47 -40.82 -0.35 3.06 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -33.53 347.98 -7.28 -40.81 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.42 Total: 7.22 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -1.27 Total: -6.48 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.05 Total: -54.84 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.14 Total: -9.44 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.53 -7.28 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171374021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.758 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds