Wall clock time and date at job start Tue Mar 31 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47158 * 2 1 4 4 C 1.50702 * 109.47249 * 119.99832 * 2 1 3 5 5 O 1.33656 * 125.80041 * 300.00275 * 4 2 1 6 6 C 1.34213 * 110.90630 * 179.97438 * 5 4 2 7 7 C 1.34180 * 109.12631 * 359.70710 * 6 5 4 8 8 C 1.36416 * 125.80314 * 119.99633 * 4 2 1 9 9 C 1.47376 * 127.19012 * 0.02562 * 8 4 2 10 10 O 1.21615 * 120.00209 * 359.97438 * 9 8 4 11 11 N 1.34777 * 119.99945 * 179.97438 * 9 8 4 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46684 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47756 * 294.99812 * 13 12 11 15 15 C 1.53009 * 109.46984 * 175.00142 * 13 12 11 16 16 N 1.46497 * 109.47333 * 55.00709 * 13 12 11 17 17 C 1.36940 * 120.00012 * 205.00143 * 16 13 12 18 18 H 1.07997 * 120.00297 * 359.97438 * 17 16 13 19 19 C 1.38814 * 119.99883 * 179.97438 * 17 16 13 20 20 N 1.31619 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99945 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47350 * 59.99516 * 21 19 17 23 23 H 1.48501 * 109.47299 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.47263 * 299.99975 * 21 19 17 25 25 H 1.09007 * 109.47235 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47105 * 299.99753 * 1 2 3 27 27 H 1.08996 * 109.47677 * 60.00003 * 1 2 3 28 28 H 1.08996 * 109.46888 * 239.99514 * 2 1 3 29 29 H 1.08996 * 109.47268 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.47108 * 299.99909 * 3 2 1 31 31 H 1.08996 * 109.47165 * 59.99677 * 3 2 1 32 32 H 1.08005 * 125.43552 * 179.97438 * 6 5 4 33 33 H 1.08002 * 127.02562 * 180.27657 * 7 6 5 34 34 H 0.96995 * 120.00018 * 0.27670 * 11 9 8 35 35 H 1.09000 * 109.47212 * 300.00355 * 12 11 9 36 36 H 1.09001 * 109.46577 * 60.00430 * 12 11 9 37 37 H 1.08999 * 109.47112 * 300.00392 * 15 13 12 38 38 H 1.09001 * 109.46642 * 60.00139 * 15 13 12 39 39 H 1.08998 * 109.46901 * 180.02562 * 15 13 12 40 40 H 0.97001 * 120.00330 * 24.98715 * 16 13 12 41 41 H 0.96996 * 120.00088 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.7819 -0.3562 2.4947 6 6 2.3765 -1.1979 3.3546 7 6 3.0347 -2.1406 2.6629 8 6 2.8199 -1.8242 1.2433 9 6 3.3409 -2.5603 0.0777 10 8 3.0748 -2.1840 -1.0477 11 7 4.1123 -3.6505 0.2590 12 6 4.6298 -4.3826 -0.8997 13 6 5.4685 -5.5690 -0.4203 14 1 6.3497 -5.2020 0.1059 15 6 5.9054 -6.4048 -1.6252 16 7 4.6691 -6.3982 0.4850 17 6 5.2883 -7.1836 1.4204 18 1 6.3659 -7.1921 1.4905 19 6 4.5307 -7.9688 2.2786 20 7 3.2173 -7.9581 2.1935 21 14 5.3753 -9.0407 3.5541 22 1 6.1790 -8.1864 4.4649 23 1 4.3514 -9.7750 4.3400 24 1 6.2672 -10.0126 2.8718 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 2.3288 -1.1300 4.4314 33 1 3.6080 -2.9622 3.0665 34 1 4.3212 -3.9530 1.1566 35 1 3.7968 -4.7464 -1.5013 36 1 5.2499 -3.7184 -1.5017 37 1 5.0242 -6.7718 -2.1515 38 1 6.5002 -5.7878 -2.2988 39 1 6.5025 -7.2502 -1.2836 40 1 3.7012 -6.3907 0.4220 41 1 2.6880 -8.5066 2.7934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265872821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:03 Heat of formation + Delta-G solvation = -29.711924 kcal Electronic energy + Delta-G solvation = -22047.697385 eV Core-core repulsion = 18736.053248 eV Total energy + Delta-G solvation = -3311.644137 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50278 -39.06955 -36.35612 -35.46777 -33.54610 -32.72360 -31.67937 -29.09962 -28.69974 -27.26821 -26.12183 -23.79234 -22.84778 -22.45557 -20.36409 -20.15918 -19.30047 -17.68737 -17.19735 -16.12641 -15.71751 -15.58709 -15.11395 -14.86110 -14.53093 -14.32572 -13.72249 -13.60103 -13.18984 -13.17950 -12.74607 -12.63285 -12.30985 -12.22752 -12.09222 -11.95505 -11.43459 -11.32201 -11.27562 -10.98208 -10.87431 -10.76628 -10.37921 -10.03902 -9.72812 -9.68138 -9.54817 -8.99579 -8.67389 -8.41897 -7.05671 -5.82532 -3.13064 1.50981 2.19225 2.87075 3.38889 3.44372 3.45110 3.63641 3.71585 4.45495 4.53118 4.81341 4.97781 5.02317 5.06106 5.34012 5.45190 5.48473 5.50547 5.56664 5.58719 5.67537 5.69512 5.87588 5.87954 5.95075 6.08153 6.09442 6.12141 6.18659 6.24570 6.35896 6.41847 6.56467 6.75439 6.87423 7.05380 7.12953 7.63936 8.00590 8.34709 8.61823 9.46483 10.01678 10.37469 11.39189 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.004387 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.425978 B = 6380.369416 C = 7340.475742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C -0.144 4.144 4 C 0.078 3.922 5 O -0.176 6.176 6 C -0.047 4.047 7 C -0.179 4.179 8 C -0.237 4.237 9 C 0.586 3.414 10 O -0.558 6.558 11 N -0.703 5.703 12 C 0.116 3.884 13 C 0.159 3.841 14 H 0.053 0.947 15 C -0.162 4.162 16 N -0.724 5.724 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.206 0.794 33 H 0.161 0.839 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 16.302 -1.539 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.052 4.052 3 C -0.202 4.202 4 C 0.025 3.975 5 O -0.072 6.072 6 C -0.113 4.113 7 C -0.199 4.199 8 C -0.241 4.241 9 C 0.374 3.626 10 O -0.440 6.440 11 N -0.353 5.353 12 C -0.009 4.009 13 C 0.049 3.951 14 H 0.071 0.929 15 C -0.223 4.223 16 N -0.366 5.366 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.178 0.822 34 H 0.247 0.753 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.057 16.682 -2.111 16.940 hybrid contribution 0.378 -1.273 1.388 1.921 sum -1.679 15.408 -0.723 15.516 Atomic orbital electron populations 1.21839 0.93609 1.02606 1.02235 1.20295 0.96453 0.96150 0.92284 1.21832 1.01537 0.94546 1.02261 1.22747 0.96192 0.94565 0.83977 1.83709 1.59876 1.48483 1.15159 1.23818 0.99898 0.92120 0.95425 1.23011 1.03884 1.01496 0.91474 1.21228 1.08270 1.00551 0.94071 1.17193 0.78028 0.80167 0.87191 1.90653 1.60249 1.68578 1.24474 1.45783 1.50722 1.27405 1.11413 1.21705 0.98086 0.93343 0.87726 1.20516 0.93813 0.89398 0.91412 0.92890 1.22358 1.00828 1.00581 0.98496 1.42470 1.05644 1.50379 1.38132 1.19181 0.91422 1.17960 1.08969 0.91176 1.24738 0.95387 1.00485 0.99977 1.69657 1.03504 1.43782 1.40782 0.86300 0.78136 0.80462 0.81423 1.21276 1.21737 1.21288 0.92103 0.92407 0.91546 0.85037 0.92280 0.91566 0.92407 0.77702 0.82178 0.75254 0.91750 0.91738 0.93194 0.94176 0.92334 0.78055 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.18 37.16 0.34 -1.22 16 2 C -0.03 -0.42 3.25 -91.77 -0.30 -0.72 16 3 C -0.14 -1.47 9.17 37.16 0.34 -1.13 16 4 C 0.08 1.13 5.88 -34.96 -0.21 0.93 16 5 O -0.18 -2.35 10.52 7.65 0.08 -2.27 16 6 C -0.05 -0.57 12.03 29.30 0.35 -0.21 16 7 C -0.18 -2.55 10.60 -37.45 -0.40 -2.95 16 8 C -0.24 -3.82 6.31 -103.28 -0.65 -4.47 16 9 C 0.59 10.56 7.81 -12.54 -0.10 10.46 16 10 O -0.56 -10.89 14.50 5.26 0.08 -10.81 16 11 N -0.70 -12.45 5.39 -61.39 -0.33 -12.78 16 12 C 0.12 2.02 5.23 -4.04 -0.02 2.00 16 13 C 0.16 3.01 3.05 -67.93 -0.21 2.80 16 14 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 15 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 16 N -0.72 -17.05 4.56 -53.42 -0.24 -17.29 16 17 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 21 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.13 1.91 5.52 -51.93 -0.29 1.63 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.21 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.16 2.19 7.74 -52.49 -0.41 1.78 16 34 H 0.41 7.40 7.30 -40.82 -0.30 7.10 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.39 9.90 7.80 -40.82 -0.32 9.59 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -30.40 346.54 -6.58 -36.98 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.35 Total: 14.61 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.74 Total: -3.89 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.15 Total: -56.43 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.16 Total: -13.08 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.40 -6.58 -36.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265872821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.263 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds