Wall clock time and date at job start Tue Mar 31 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35040 * 126.39897 * 264.69060 * 3 2 1 5 5 N 1.30502 * 108.70202 * 179.82812 * 4 3 2 6 6 C 1.34132 * 109.25419 * 0.43978 * 5 4 3 7 7 C 1.34670 * 108.01924 * 359.73084 * 6 5 4 8 8 C 1.50705 * 126.59354 * 180.02562 * 7 6 5 9 9 O 1.45203 * 109.46662 * 359.95496 * 8 7 6 10 10 C 1.34226 * 116.99704 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00105 * 0.02562 * 10 9 8 12 12 C 1.50710 * 119.99937 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46856 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47140 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47350 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99722 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00288 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99841 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99991 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47117 * 60.00612 * 20 18 16 22 22 H 1.48507 * 109.47083 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47207 * 300.00436 * 20 18 16 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 29 29 H 1.07999 * 125.65023 * 359.97438 * 4 3 2 30 30 H 1.08005 * 125.99084 * 179.72252 * 6 5 4 31 31 H 1.08999 * 109.46950 * 119.94949 * 8 7 6 32 32 H 1.08998 * 109.47138 * 239.95767 * 8 7 6 33 33 H 1.09001 * 109.46751 * 299.99992 * 12 10 9 34 34 H 1.09002 * 109.46970 * 60.00097 * 12 10 9 35 35 H 1.08997 * 109.47234 * 300.00088 * 13 12 10 36 36 H 1.09002 * 109.47212 * 60.00253 * 13 12 10 37 37 H 1.08997 * 109.47535 * 300.00227 * 14 13 12 38 38 H 1.09002 * 109.46739 * 60.00287 * 14 13 12 39 39 H 1.09010 * 109.47092 * 300.00104 * 15 14 13 40 40 H 1.09002 * 109.47436 * 59.99855 * 15 14 13 41 41 H 0.97000 * 119.99964 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3802 2.1032 -1.0823 5 7 2.7564 3.2889 -0.6876 6 6 2.6584 3.3622 0.6481 7 6 2.1985 2.1790 1.0976 8 6 1.9326 1.8052 2.5332 9 8 2.2513 2.9309 3.3933 10 6 2.0679 2.7611 4.7121 11 8 1.6553 1.7067 5.1339 12 6 2.3767 3.8857 5.6667 13 6 2.0824 3.4343 7.0987 14 6 2.3965 4.5757 8.0679 15 6 2.1028 4.1242 9.5000 16 6 2.4115 5.2486 10.4546 17 1 2.7799 6.1912 10.0775 18 6 2.2227 5.0744 11.8092 19 7 1.7736 3.9267 12.2683 20 14 2.6061 6.4680 12.9925 21 1 1.7630 7.6447 12.6612 22 1 2.3209 6.0298 14.3825 23 1 4.0396 6.8373 12.8746 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.3592 1.7576 -2.1053 30 1 2.9052 4.2198 1.2565 31 1 0.8812 1.5436 2.6517 32 1 2.5527 0.9517 2.8072 33 1 3.4287 4.1573 5.5799 34 1 1.7572 4.7490 5.4237 35 1 1.0303 3.1628 7.1852 36 1 2.7016 2.5708 7.3420 37 1 3.4486 4.8468 7.9814 38 1 1.7776 5.4394 7.8248 39 1 1.0506 3.8528 9.5869 40 1 2.7219 3.2605 9.7429 41 1 1.6411 3.8041 13.2213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346748821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:18 Heat of formation + Delta-G solvation = -49.913918 kcal Electronic energy + Delta-G solvation = -20675.929129 eV Core-core repulsion = 17363.408968 eV Total energy + Delta-G solvation = -3312.520161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48115 -40.49707 -36.86219 -35.45055 -35.00174 -32.71848 -31.65152 -30.40878 -29.83899 -26.80401 -25.55165 -24.27367 -22.87763 -21.78040 -20.44253 -20.28054 -20.03538 -17.72198 -17.52756 -16.93598 -16.19683 -16.08812 -15.81879 -15.22513 -14.82531 -14.46686 -14.36255 -13.79774 -13.67892 -13.58614 -13.15466 -12.90073 -12.66478 -12.34675 -12.31179 -11.94796 -11.73891 -11.68007 -11.08901 -10.99976 -10.61989 -10.59643 -10.47549 -10.45184 -10.25186 -9.95697 -9.65580 -9.29643 -9.03840 -8.67042 -8.31648 -5.96662 -3.99256 1.62401 2.00179 2.20419 2.75300 2.88897 3.35326 3.39621 3.42040 4.05731 4.14964 4.34948 4.38816 4.48268 4.58400 4.70730 4.82849 4.87395 4.96221 5.01933 5.12380 5.22485 5.25673 5.38849 5.46532 5.52094 5.69342 5.96039 6.04045 6.16903 6.28905 6.41547 6.45484 6.75397 6.81867 6.93287 7.15415 7.69365 7.71532 7.77548 7.86228 8.03948 8.45743 9.08095 9.64557 11.14636 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.044241 B = 0.002253 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.746190 B =12426.209978 C =12939.678767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.452 5.452 4 C 0.186 3.814 5 N -0.495 5.495 6 C 0.005 3.995 7 C -0.040 4.040 8 C 0.151 3.849 9 O -0.351 6.351 10 C 0.464 3.536 11 O -0.504 6.504 12 C -0.110 4.110 13 C -0.109 4.109 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.207 0.793 30 H 0.176 0.824 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -8.264 -27.679 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.138 5.138 4 C -0.095 4.095 5 N -0.212 5.212 6 C -0.144 4.144 7 C -0.154 4.154 8 C 0.076 3.924 9 O -0.267 6.267 10 C 0.308 3.692 11 O -0.391 6.391 12 C -0.148 4.148 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.223 0.777 30 H 0.194 0.806 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.792 -8.208 -27.916 29.108 hybrid contribution -0.184 -0.209 1.133 1.167 sum -0.977 -8.417 -26.783 28.091 Atomic orbital electron populations 1.22173 0.93762 1.03519 1.03457 1.21940 0.95986 0.79747 1.04964 1.45339 1.49329 1.12698 1.06412 1.24998 1.02786 0.88380 0.93357 1.70347 1.20542 1.18230 1.12099 1.22171 1.04090 0.97382 0.90710 1.20548 1.11739 0.94148 0.88938 1.20617 1.01138 0.87501 0.83143 1.86456 1.79372 1.41778 1.19134 1.24300 0.73870 0.90098 0.80963 1.90679 1.41722 1.28701 1.78007 1.21638 1.04902 0.95012 0.93211 1.21590 1.02636 1.00201 0.90192 1.21652 1.00209 0.95880 0.97038 1.19093 0.97054 0.96599 0.88944 1.21237 1.43788 0.99342 0.91590 0.92718 1.25041 0.95356 0.95661 0.98516 1.69961 1.46006 1.23707 1.13840 0.86657 0.78827 0.82488 0.80005 1.20253 1.21340 1.20256 0.90192 0.91730 0.91578 0.89056 0.88323 0.77654 0.80647 0.90211 0.90228 0.87619 0.87627 0.91521 0.91523 0.93137 0.93139 0.96568 0.96559 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.24 37.16 0.38 -0.32 16 2 C 0.10 0.41 6.66 -4.04 -0.03 0.38 16 3 N -0.45 -3.55 2.75 -113.99 -0.31 -3.86 16 4 C 0.19 1.56 12.56 -90.38 -1.13 0.43 16 5 N -0.49 -5.84 11.25 -14.66 -0.16 -6.01 16 6 C 0.00 0.05 11.23 -17.81 -0.20 -0.15 16 7 C -0.04 -0.41 6.93 -81.60 -0.57 -0.97 16 8 C 0.15 1.55 5.67 36.01 0.20 1.75 16 9 O -0.35 -4.18 9.55 -39.25 -0.37 -4.55 16 10 C 0.46 6.29 7.96 36.01 0.29 6.58 16 11 O -0.50 -8.26 15.73 -18.75 -0.29 -8.55 16 12 C -0.11 -1.41 5.81 -27.88 -0.16 -1.57 16 13 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 14 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 15 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 16 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.36 8.02 -51.93 -0.42 -0.05 16 28 H 0.10 0.19 8.13 -51.93 -0.42 -0.23 16 29 H 0.21 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.18 1.92 7.86 -52.48 -0.41 1.50 16 31 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -34.66 353.47 -8.83 -43.49 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.70 Total: -4.66 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -2.03 Total: -11.40 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.26 Total: -36.43 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.67 Total: -13.11 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.66 -8.83 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346748821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.420 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds