Wall clock time and date at job start Tue Mar 31 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.50695 * 109.47087 * 239.99567 * 2 1 3 5 5 H 1.08005 * 120.00412 * 245.75883 * 4 2 1 6 6 C 1.37878 * 119.99822 * 65.76242 * 4 2 1 7 7 N 1.31516 * 119.99980 * 196.09241 * 6 4 2 8 8 Si 1.86798 * 120.00060 * 16.36007 * 6 4 2 9 9 H 1.48501 * 109.47383 * 179.72493 * 8 6 4 10 10 H 1.48494 * 109.47223 * 299.72941 * 8 6 4 11 11 H 1.48500 * 109.47117 * 59.72825 * 8 6 4 12 12 N 1.46908 * 109.46825 * 119.99924 * 2 1 3 13 13 C 1.46896 * 111.00106 * 274.99486 * 12 2 1 14 14 C 1.53120 * 109.52540 * 274.87685 * 13 12 2 15 15 C 1.53041 * 109.27341 * 182.50403 * 14 13 12 16 16 N 1.46844 * 109.58007 * 59.08281 * 15 14 13 17 17 C 1.46903 * 111.00460 * 174.19235 * 16 15 14 18 18 C 1.52999 * 109.47092 * 200.90020 * 17 16 15 19 19 F 1.39897 * 109.46939 * 54.28944 * 18 17 16 20 20 F 1.39904 * 109.46716 * 174.28719 * 18 17 16 21 21 F 1.39893 * 109.47177 * 294.29028 * 18 17 16 22 22 C 1.46854 * 111.19595 * 298.29121 * 16 15 14 23 23 C 1.53031 * 109.52562 * 61.73779 * 22 16 15 24 24 H 1.09001 * 109.47220 * 295.18466 * 1 2 3 25 25 H 1.08997 * 109.47197 * 55.17678 * 1 2 3 26 26 H 1.08994 * 109.47793 * 175.18194 * 1 2 3 27 27 H 0.96996 * 119.99927 * 355.22427 * 7 6 4 28 28 H 1.00899 * 110.99605 * 151.04508 * 12 2 1 29 29 H 1.09006 * 109.51999 * 35.00547 * 13 12 2 30 30 H 1.08996 * 109.49954 * 302.37909 * 14 13 12 31 31 H 1.09000 * 109.50458 * 62.50261 * 14 13 12 32 32 H 1.09006 * 109.41097 * 299.06633 * 15 14 13 33 33 H 1.09003 * 109.45571 * 179.12702 * 15 14 13 34 34 H 1.08997 * 109.46890 * 320.90384 * 17 16 15 35 35 H 1.09001 * 109.46994 * 80.89703 * 17 16 15 36 36 H 1.08999 * 109.45916 * 301.72047 * 22 16 15 37 37 H 1.08997 * 109.45347 * 181.75214 * 22 16 15 38 38 H 1.08998 * 109.50513 * 180.87834 * 23 22 16 39 39 H 1.09005 * 109.50226 * 60.76088 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5744 -1.6397 -1.1340 6 6 1.7999 -0.1743 -2.4792 7 7 1.9453 -0.9202 -3.5525 8 14 1.2858 1.6137 -2.6470 9 1 1.1060 1.9444 -4.0836 10 1 0.0063 1.8307 -1.9252 11 1 2.3364 2.4875 -2.0658 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 3.4132 0.9798 2.3253 15 6 3.4994 1.8849 3.5563 16 7 3.3974 1.0706 4.7740 17 6 3.6140 1.8890 5.9745 18 6 4.0171 0.9857 7.1417 19 9 5.1222 0.2115 6.7721 20 9 4.3494 1.7743 8.2485 21 9 2.9485 0.1454 7.4717 22 6 2.1072 0.3721 4.8391 23 6 1.9801 -0.5794 3.6473 24 1 -0.3634 0.4373 0.9300 25 1 -0.3633 0.5868 -0.8436 26 1 -0.3634 -1.0239 -0.0863 27 1 2.2824 -1.8261 -3.4715 28 1 2.9172 -1.1205 1.0288 29 1 1.2579 0.9333 2.2915 30 1 4.2376 0.2670 2.3403 31 1 3.4721 1.5864 1.4216 32 1 2.6832 2.6070 3.5329 33 1 4.4525 2.4139 3.5520 34 1 4.4075 2.6115 5.7833 35 1 2.6941 2.4175 6.2248 36 1 1.2976 1.1013 4.8097 37 1 2.0493 -0.1977 5.7665 38 1 1.0159 -1.0861 3.6874 39 1 2.7815 -1.3174 3.6837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:48 Heat of formation + Delta-G solvation = -156.403829 kcal Electronic energy + Delta-G solvation = -22968.105891 eV Core-core repulsion = 19109.111240 eV Total energy + Delta-G solvation = -3858.994650 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.24849 -47.83407 -47.64820 -39.28786 -36.27247 -33.50532 -31.68141 -30.85696 -29.39377 -27.22956 -24.78865 -23.54182 -23.05636 -22.12576 -19.79884 -19.60843 -18.69021 -18.64930 -17.57207 -17.52333 -16.02659 -15.24504 -14.92962 -14.71984 -14.62408 -14.38414 -14.20366 -14.05394 -13.87983 -13.81442 -13.68978 -13.58162 -12.98249 -12.62265 -12.35030 -12.30296 -11.97717 -11.90215 -11.61110 -11.16181 -11.06502 -10.85314 -10.48970 -10.39939 -10.10178 -9.95334 -9.63736 -8.86200 -8.74436 -8.27432 -7.47360 -6.47390 -4.09226 2.51339 3.30206 3.33965 3.37141 3.56319 3.64291 3.82173 4.25053 4.45240 4.66179 4.77122 4.86939 4.95346 5.02928 5.25219 5.26626 5.29184 5.42145 5.60116 5.77616 5.82828 5.86439 6.06817 6.17495 6.38147 6.48326 6.50313 6.64958 6.67522 6.79625 6.82414 6.94755 7.47360 7.74358 8.13551 8.38116 8.50159 8.93981 9.60107 10.92587 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.039010 B = 0.003667 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.586454 B = 7633.433631 C = 7765.871213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.189 3.811 3 H -0.007 1.007 4 C -0.603 4.603 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.907 5.907 8 Si 1.047 2.953 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.286 1.286 12 N -0.675 5.675 13 C 0.084 3.916 14 C -0.146 4.146 15 C 0.065 3.935 16 N -0.532 5.532 17 C 0.008 3.992 18 C 0.458 3.542 19 F -0.172 7.172 20 F -0.188 7.188 21 F -0.183 7.183 22 C 0.038 3.962 23 C -0.101 4.101 24 H 0.018 0.982 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.268 0.732 28 H 0.338 0.662 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 7.700 20.936 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.080 3.920 3 H 0.010 0.990 4 C -0.641 4.641 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.876 3.124 9 H -0.212 1.212 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.304 5.304 13 C -0.027 4.027 14 C -0.185 4.185 15 C -0.063 4.063 16 N -0.257 5.257 17 C -0.122 4.122 18 C 0.403 3.597 19 F -0.153 7.153 20 F -0.169 7.169 21 F -0.164 7.164 22 C -0.089 4.089 23 C -0.139 4.139 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.072 8.198 19.947 21.665 hybrid contribution 0.740 -0.171 1.132 1.363 sum 2.811 8.027 21.079 22.730 Atomic orbital electron populations 1.22181 0.98524 1.01010 0.98145 1.19402 0.91936 0.92355 0.88335 0.98963 1.22105 1.40642 1.10067 0.91296 0.92221 1.25705 0.94795 1.04868 0.92073 1.70844 1.41557 1.10430 1.31275 0.84035 0.77016 0.75390 0.75982 1.21159 1.19889 1.21258 1.60630 1.32758 1.31918 1.05109 1.21630 0.95212 0.93670 0.92174 1.22381 1.00292 0.99616 0.96227 1.22102 1.00948 0.94496 0.88723 1.61777 1.34498 1.28843 1.00554 1.23180 1.04623 0.94394 0.89992 1.20555 0.75177 0.80253 0.83746 1.93209 1.54169 1.76658 1.91289 1.93177 1.92767 1.74292 1.56713 1.93107 1.56343 1.73626 1.93358 1.22574 0.87927 0.97305 1.01117 1.21546 1.02704 0.97542 0.92143 0.96270 0.93110 0.93114 0.92194 0.84353 0.91496 0.90848 0.90885 0.94351 0.90587 0.86558 0.90076 0.94397 0.89340 0.90769 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.09 37.16 0.34 -2.80 16 2 C 0.19 4.39 2.00 -68.86 -0.14 4.25 16 3 H -0.01 -0.17 5.82 -51.93 -0.30 -0.47 16 4 C -0.60 -16.64 8.83 -34.44 -0.30 -16.95 16 5 H 0.06 1.78 7.92 -52.48 -0.42 1.37 16 6 C 0.03 0.88 5.36 -17.82 -0.10 0.79 16 7 N -0.91 -27.67 13.70 55.43 0.76 -26.91 16 8 Si 1.05 24.83 26.40 -169.99 -4.49 20.34 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.27 -5.98 5.44 56.52 0.31 -5.67 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.67 -13.53 6.05 -100.82 -0.61 -14.14 16 13 C 0.08 1.35 2.33 -67.59 -0.16 1.20 16 14 C -0.15 -2.10 5.34 -26.65 -0.14 -2.24 16 15 C 0.06 0.73 5.42 -3.83 -0.02 0.71 16 16 N -0.53 -5.89 4.41 -234.66 -1.03 -6.92 16 17 C 0.01 0.07 5.12 -3.82 -0.02 0.05 16 18 C 0.46 4.53 3.27 37.16 0.12 4.66 16 19 F -0.17 -2.03 17.14 2.25 0.04 -1.99 16 20 F -0.19 -1.82 17.32 2.25 0.04 -1.78 16 21 F -0.18 -1.98 14.65 2.25 0.03 -1.94 16 22 C 0.04 0.44 5.23 -3.83 -0.02 0.42 16 23 C -0.10 -1.40 5.70 -26.65 -0.15 -1.55 16 24 H 0.02 0.37 7.38 -51.93 -0.38 -0.02 16 25 H 0.05 1.15 4.68 -51.93 -0.24 0.91 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.27 8.16 8.73 -40.82 -0.36 7.81 16 28 H 0.34 6.94 7.98 -39.29 -0.31 6.62 16 29 H 0.07 1.12 7.10 -51.93 -0.37 0.75 16 30 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 31 H 0.07 1.15 7.47 -51.93 -0.39 0.76 16 32 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.75 7.92 -51.93 -0.41 0.33 16 34 H 0.12 0.78 7.78 -51.93 -0.40 0.38 16 35 H 0.08 0.57 7.99 -51.93 -0.41 0.16 16 36 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.99 5.45 -51.93 -0.28 0.71 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -29.45 312.02 -6.86 -36.31 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.71 Total: 3.80 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.59 Total: -11.47 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.89 Total: -47.96 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.11 Total: -5.71 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.49 Total: 20.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.45 -6.86 -36.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.096 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds