Wall clock time and date at job start Tue Mar 31 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.50695 * 109.47087 * 239.99567 * 2 1 3 5 5 H 1.08005 * 120.00412 * 245.75883 * 4 2 1 6 6 C 1.37878 * 119.99822 * 65.76242 * 4 2 1 7 7 N 1.31516 * 119.99980 * 196.09241 * 6 4 2 8 8 Si 1.86798 * 120.00060 * 16.36007 * 6 4 2 9 9 H 1.48501 * 109.47383 * 179.72493 * 8 6 4 10 10 H 1.48494 * 109.47223 * 299.72941 * 8 6 4 11 11 H 1.48500 * 109.47117 * 59.72825 * 8 6 4 12 12 N 1.46908 * 109.46825 * 119.99924 * 2 1 3 13 13 C 1.46896 * 111.00106 * 274.99486 * 12 2 1 14 14 C 1.53120 * 109.52540 * 274.87685 * 13 12 2 15 15 C 1.53041 * 109.27341 * 182.50403 * 14 13 12 16 16 N 1.46844 * 109.58007 * 59.08281 * 15 14 13 17 17 C 1.46903 * 111.00460 * 174.19235 * 16 15 14 18 18 C 1.52999 * 109.47092 * 200.90020 * 17 16 15 19 19 F 1.39897 * 109.46939 * 54.28944 * 18 17 16 20 20 F 1.39904 * 109.46716 * 174.28719 * 18 17 16 21 21 F 1.39893 * 109.47177 * 294.29028 * 18 17 16 22 22 C 1.46854 * 111.19595 * 298.29121 * 16 15 14 23 23 C 1.53031 * 109.52562 * 61.73779 * 22 16 15 24 24 H 1.09001 * 109.47220 * 295.18466 * 1 2 3 25 25 H 1.08997 * 109.47197 * 55.17678 * 1 2 3 26 26 H 1.08994 * 109.47793 * 175.18194 * 1 2 3 27 27 H 0.96996 * 119.99927 * 355.22427 * 7 6 4 28 28 H 1.00899 * 110.99605 * 151.04508 * 12 2 1 29 29 H 1.09006 * 109.51999 * 35.00547 * 13 12 2 30 30 H 1.08996 * 109.49954 * 302.37909 * 14 13 12 31 31 H 1.09000 * 109.50458 * 62.50261 * 14 13 12 32 32 H 1.09006 * 109.41097 * 299.06633 * 15 14 13 33 33 H 1.09003 * 109.45571 * 179.12702 * 15 14 13 34 34 H 1.08997 * 109.46890 * 320.90384 * 17 16 15 35 35 H 1.09001 * 109.46994 * 80.89703 * 17 16 15 36 36 H 1.08999 * 109.45916 * 301.72047 * 22 16 15 37 37 H 1.08997 * 109.45347 * 181.75214 * 22 16 15 38 38 H 1.08998 * 109.50513 * 180.87834 * 23 22 16 39 39 H 1.09005 * 109.50226 * 60.76088 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5744 -1.6397 -1.1340 6 6 1.7999 -0.1743 -2.4792 7 7 1.9453 -0.9202 -3.5525 8 14 1.2858 1.6137 -2.6470 9 1 1.1060 1.9444 -4.0836 10 1 0.0063 1.8307 -1.9252 11 1 2.3364 2.4875 -2.0658 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 3.4132 0.9798 2.3253 15 6 3.4994 1.8849 3.5563 16 7 3.3974 1.0706 4.7740 17 6 3.6140 1.8890 5.9745 18 6 4.0171 0.9857 7.1417 19 9 5.1222 0.2115 6.7721 20 9 4.3494 1.7743 8.2485 21 9 2.9485 0.1454 7.4717 22 6 2.1072 0.3721 4.8391 23 6 1.9801 -0.5794 3.6473 24 1 -0.3634 0.4373 0.9300 25 1 -0.3633 0.5868 -0.8436 26 1 -0.3634 -1.0239 -0.0863 27 1 2.2824 -1.8261 -3.4715 28 1 2.9172 -1.1205 1.0288 29 1 1.2579 0.9333 2.2915 30 1 4.2376 0.2670 2.3403 31 1 3.4721 1.5864 1.4216 32 1 2.6832 2.6070 3.5329 33 1 4.4525 2.4139 3.5520 34 1 4.4075 2.6115 5.7833 35 1 2.6941 2.4175 6.2248 36 1 1.2976 1.1013 4.8097 37 1 2.0493 -0.1977 5.7665 38 1 1.0159 -1.0861 3.6874 39 1 2.7815 -1.3174 3.6837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:46 Heat of formation + Delta-G solvation = -177.297983 kcal Electronic energy + Delta-G solvation = -22969.011929 eV Core-core repulsion = 19109.111240 eV Total energy + Delta-G solvation = -3859.900689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.146 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -51.02333 -48.59763 -48.46206 -40.33221 -37.72017 -35.16517 -33.38099 -31.85345 -30.69245 -28.47312 -26.77253 -24.57590 -24.03337 -23.13569 -21.43313 -20.95225 -19.63493 -19.44700 -19.39404 -18.34315 -17.05463 -16.64998 -16.06913 -15.81259 -15.51148 -15.36819 -15.23893 -15.17428 -15.01120 -14.86030 -14.68584 -14.59907 -14.40239 -14.19024 -13.84111 -13.37116 -13.36358 -13.04872 -12.91452 -12.63386 -12.39737 -12.17158 -12.01730 -11.96582 -11.54227 -11.49298 -11.25852 -10.93026 -10.42127 -9.54201 -9.08398 -8.72595 -6.37201 1.44447 1.51608 1.71160 1.78430 2.48692 2.51312 2.93341 3.07221 3.12172 3.44819 3.48892 3.86062 3.93322 4.03986 4.21960 4.26011 4.34500 4.44923 4.57140 4.57786 4.64190 4.71918 4.86171 4.87560 4.94861 5.02515 5.04006 5.15090 5.30556 5.38472 5.62245 5.80767 5.82268 5.90271 6.02755 6.33349 6.72072 6.81013 7.42333 8.64194 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.039010 B = 0.003667 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.586454 B = 7633.433631 C = 7765.871213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.193 3.807 3 H 0.000 1.000 4 C -0.604 4.604 5 H 0.019 0.981 6 C -0.021 4.021 7 N -0.941 5.941 8 Si 1.085 2.915 9 H -0.291 1.291 10 H -0.239 1.239 11 H -0.264 1.264 12 N -0.683 5.683 13 C 0.084 3.916 14 C -0.142 4.142 15 C 0.072 3.928 16 N -0.547 5.547 17 C 0.013 3.987 18 C 0.456 3.544 19 F -0.186 7.186 20 F -0.186 7.186 21 F -0.190 7.190 22 C 0.045 3.955 23 C -0.095 4.095 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.251 0.749 28 H 0.331 0.669 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 10.448 23.098 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.083 3.917 3 H 0.018 0.982 4 C -0.643 4.643 5 H 0.037 0.963 6 C -0.219 4.219 7 N -0.577 5.577 8 Si 0.906 3.094 9 H -0.217 1.217 10 H -0.164 1.164 11 H -0.189 1.189 12 N -0.312 5.312 13 C -0.026 4.026 14 C -0.181 4.181 15 C -0.055 4.055 16 N -0.272 5.272 17 C -0.116 4.116 18 C 0.401 3.599 19 F -0.168 7.168 20 F -0.168 7.168 21 F -0.171 7.171 22 C -0.082 4.082 23 C -0.133 4.133 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.448 10.935 22.158 24.751 hybrid contribution 1.000 -1.144 0.533 1.610 sum 2.448 9.791 22.691 24.834 Atomic orbital electron populations 1.22072 0.97399 1.00182 0.99669 1.19248 0.92663 0.92116 0.87681 0.98226 1.22354 1.39582 1.08672 0.93648 0.96254 1.27207 0.94455 1.08466 0.91783 1.70983 1.44179 1.10026 1.32507 0.83599 0.78906 0.70625 0.76277 1.21742 1.16403 1.18889 1.60597 1.32464 1.33000 1.05144 1.21730 0.96242 0.93418 0.91256 1.22257 0.98694 0.99585 0.97605 1.22014 1.02609 0.93744 0.87122 1.61640 1.34213 1.29858 1.01516 1.23275 1.06517 0.93851 0.88002 1.20835 0.74580 0.80180 0.84323 1.93183 1.54990 1.77198 1.91429 1.93180 1.92738 1.74100 1.56770 1.93093 1.56578 1.74005 1.93473 1.22469 0.88819 0.97191 0.99735 1.21449 1.02006 0.97649 0.92196 0.93146 0.93336 0.94890 0.94017 0.85210 0.91340 0.92060 0.92320 0.92971 0.88669 0.84314 0.87789 0.93047 0.88924 0.91161 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.78 9.09 71.98 0.65 -5.13 16 2 C 0.19 8.79 2.00 44.16 0.09 8.88 16 3 H 0.00 0.01 5.82 -2.39 -0.01 0.00 16 4 C -0.60 -34.12 8.83 25.60 0.23 -33.90 16 5 H 0.02 1.21 7.92 -2.91 -0.02 1.19 16 6 C -0.02 -1.22 5.36 84.65 0.45 -0.77 16 7 N -0.94 -59.18 13.70 21.45 0.29 -58.89 16 8 Si 1.08 48.81 26.40 68.60 1.81 50.62 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.24 -9.49 5.44 99.48 0.54 -8.95 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 N -0.68 -27.22 6.05 -472.90 -2.86 -30.08 16 13 C 0.08 2.55 2.33 45.00 0.10 2.65 16 14 C -0.14 -3.84 5.34 30.65 0.16 -3.68 16 15 C 0.07 1.38 5.42 86.33 0.47 1.85 16 16 N -0.55 -10.34 4.41 -896.34 -3.95 -14.29 16 17 C 0.01 0.17 5.12 86.30 0.44 0.61 16 18 C 0.46 7.85 3.27 71.98 0.24 8.09 16 19 F -0.19 -4.08 17.14 44.97 0.77 -3.31 16 20 F -0.19 -3.13 17.32 44.97 0.78 -2.35 16 21 F -0.19 -3.68 14.65 44.97 0.66 -3.02 16 22 C 0.05 0.92 5.23 86.32 0.45 1.37 16 23 C -0.09 -2.47 5.70 30.64 0.17 -2.30 16 24 H 0.05 1.82 7.38 -2.39 -0.02 1.80 16 25 H 0.05 2.07 4.68 -2.39 -0.01 2.06 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 28 H 0.33 13.91 7.98 -89.70 -0.72 13.20 16 29 H 0.07 2.08 7.10 -2.38 -0.02 2.06 16 30 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.06 1.75 7.47 -2.39 -0.02 1.73 16 32 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.10 1.48 7.92 -2.39 -0.02 1.46 16 34 H 0.14 1.23 7.78 -2.39 -0.02 1.21 16 35 H 0.10 0.96 7.99 -2.39 -0.02 0.94 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.83 5.45 -2.39 -0.01 1.82 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -65.28 312.02 1.10 -64.17 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.14 Total: 19.48 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.46 Total: -22.32 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -6.52 Total: -103.27 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 2.21 Total: -8.69 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.81 Total: 50.62 kcal Total: -65.28 1.10 -64.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.125 kcal (2) G-P(sol) polarization free energy of solvation -65.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds