Wall clock time and date at job start Tue Mar 31 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47248 * 199.22635 * 3 2 1 5 5 C 1.42894 * 114.00285 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47360 * 30.00498 * 5 4 3 7 7 C 1.53007 * 109.47478 * 270.00767 * 5 4 3 8 8 C 1.50706 * 109.47353 * 150.00338 * 5 4 3 9 9 O 1.21278 * 119.99561 * 5.00444 * 8 5 4 10 10 N 1.34768 * 119.99924 * 185.00336 * 8 5 4 11 11 C 1.46500 * 119.99743 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47659 * 34.99804 * 11 10 8 13 13 C 1.53001 * 109.46866 * 274.99573 * 11 10 8 14 14 C 1.53000 * 109.47093 * 154.99920 * 11 10 8 15 15 C 1.53491 * 114.20581 * 295.13283 * 14 11 10 16 16 N 1.47068 * 87.98931 * 220.34690 * 15 14 11 17 17 C 1.36930 * 136.05760 * 207.08613 * 16 15 14 18 18 H 1.08000 * 120.00754 * 7.80142 * 17 16 15 19 19 C 1.38819 * 119.99891 * 187.79765 * 17 16 15 20 20 N 1.31612 * 120.00087 * 195.16184 * 19 17 16 21 21 Si 1.86804 * 119.99669 * 15.17022 * 19 17 16 22 22 H 1.48506 * 109.46509 * 269.99501 * 21 19 17 23 23 H 1.48495 * 109.47485 * 29.99346 * 21 19 17 24 24 H 1.48502 * 109.47078 * 149.99935 * 21 19 17 25 25 C 1.47064 * 87.88132 * 27.34445 * 16 15 14 26 26 H 4.38452 * 5.44420 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.46825 * 79.23182 * 3 2 1 28 28 H 1.09001 * 109.47332 * 319.23338 * 3 2 1 29 29 H 1.08999 * 109.46753 * 299.99672 * 7 5 4 30 30 H 1.09002 * 109.47187 * 59.99289 * 7 5 4 31 31 H 1.08993 * 109.47020 * 180.02562 * 7 5 4 32 32 H 0.96998 * 120.00911 * 359.97438 * 10 8 5 33 33 H 1.09001 * 109.47388 * 304.84112 * 13 11 10 34 34 H 1.08999 * 109.47241 * 64.84153 * 13 11 10 35 35 H 1.09000 * 109.47347 * 184.83771 * 13 11 10 36 36 H 1.09004 * 113.41670 * 68.34300 * 14 11 10 37 37 H 1.09006 * 113.46406 * 105.56897 * 15 14 11 38 38 H 1.08994 * 113.52589 * 335.14228 * 15 14 11 39 39 H 0.96996 * 120.00085 * 354.94044 * 20 19 17 40 40 H 1.09003 * 113.47092 * 87.43493 * 25 16 15 41 41 H 1.09006 * 113.46815 * 217.87607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.2730 0.4436 5 6 4.5462 1.3804 0.4803 6 1 4.9788 0.7394 -0.2879 7 6 5.0555 0.9433 1.8553 8 6 4.9489 2.8103 0.2266 9 8 4.0999 3.6702 0.1238 10 7 6.2524 3.1334 0.1140 11 6 6.6439 4.5235 -0.1320 12 1 5.9572 5.1918 0.3876 13 6 6.5945 4.8090 -1.6343 14 6 8.0660 4.7519 0.3840 15 6 8.2140 4.6097 1.9051 16 7 9.1152 5.7715 1.8740 17 6 10.1572 6.2317 2.6338 18 1 10.5632 5.6163 3.4231 19 6 10.6920 7.4892 2.3897 20 7 11.8609 7.8173 2.8978 21 14 9.7522 8.7160 1.3402 22 1 10.1396 8.5481 -0.0836 23 1 8.2938 8.4788 1.4877 24 1 10.0766 10.0962 1.7820 25 6 8.4004 6.2249 0.6714 26 1 -1.0502 -0.0004 0.0000 27 1 3.0094 -0.1912 -1.0096 28 1 3.0097 -0.7775 0.6710 29 1 4.6230 1.5843 2.6235 30 1 4.7642 -0.0909 2.0388 31 1 6.1420 1.0257 1.8833 32 1 6.9316 2.4458 0.1966 33 1 7.2152 4.0850 -2.1623 34 1 5.5657 4.7300 -1.9855 35 1 6.9674 5.8152 -1.8255 36 1 8.8256 4.2217 -0.1905 37 1 8.7069 3.6861 2.2088 38 1 7.2886 4.7926 2.4513 39 1 12.3149 7.2094 3.5021 40 1 7.5236 6.8340 0.8913 41 1 9.0520 6.6775 -0.0761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675311708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:11 Heat of formation + Delta-G solvation = 33.991892 kcal Electronic energy + Delta-G solvation = -21731.294245 eV Core-core repulsion = 18422.412513 eV Total energy + Delta-G solvation = -3308.881732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26445 -38.89609 -37.85438 -34.99859 -33.80764 -32.53324 -31.90436 -30.11105 -27.81673 -27.45620 -25.34985 -24.71838 -23.49780 -21.07996 -20.44161 -19.54553 -18.93333 -17.54351 -17.30820 -17.18332 -16.21961 -15.76817 -15.15755 -15.09824 -14.82510 -14.18793 -13.85215 -13.73028 -13.36945 -13.29376 -13.04881 -12.78075 -12.53478 -12.24344 -11.99952 -11.78927 -11.73060 -11.20680 -11.09450 -11.00743 -10.87914 -10.73563 -10.35158 -10.11119 -10.02518 -9.64344 -9.42028 -9.17733 -9.03198 -8.68995 -7.18523 -6.30991 -3.23116 2.05649 2.46843 2.57835 2.96491 3.41738 3.50179 3.63615 3.69754 4.19485 4.45798 4.57842 4.59515 4.67962 4.73387 4.79155 4.97537 4.99900 5.09778 5.28403 5.36357 5.42207 5.44435 5.55325 5.55825 5.74601 5.82336 5.87346 6.04937 6.17617 6.25342 6.25718 6.33340 6.40320 6.53123 6.69186 6.92186 7.12613 7.23103 7.49918 8.21468 8.23256 8.96771 9.50391 10.37131 11.18868 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.003254 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.386161 B = 8603.161534 C = 8955.744255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.193 4.193 3 C 0.170 3.830 4 O -0.351 6.351 5 C 0.071 3.929 6 H 0.089 0.911 7 C -0.172 4.172 8 C 0.514 3.486 9 O -0.520 6.520 10 N -0.717 5.717 11 C 0.153 3.847 12 H 0.090 0.910 13 C -0.160 4.160 14 C -0.140 4.140 15 C 0.126 3.874 16 N -0.625 5.625 17 C -0.305 4.305 18 H 0.081 0.919 19 C -0.024 4.024 20 N -0.932 5.932 21 Si 1.061 2.939 22 H -0.292 1.292 23 H -0.281 1.281 24 H -0.295 1.295 25 C 0.114 3.886 26 H 0.222 0.778 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.399 0.601 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.047 0.953 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 -18.238 -8.561 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.094 3.906 4 O -0.269 6.269 5 C 0.010 3.990 6 H 0.106 0.894 7 C -0.230 4.230 8 C 0.298 3.702 9 O -0.394 6.394 10 N -0.369 5.369 11 C 0.049 3.951 12 H 0.108 0.892 13 C -0.218 4.218 14 C -0.160 4.160 15 C -0.001 4.001 16 N -0.352 5.352 17 C -0.432 4.432 18 H 0.099 0.901 19 C -0.223 4.223 20 N -0.574 5.574 21 Si 0.892 3.108 22 H -0.220 1.220 23 H -0.207 1.207 24 H -0.222 1.222 25 C -0.013 4.013 26 H 0.239 0.761 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.233 0.767 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.738 -15.845 -9.080 24.772 hybrid contribution 0.184 -2.052 0.818 2.216 sum -16.553 -17.896 -8.261 25.740 Atomic orbital electron populations 1.24987 0.95906 0.97704 1.00286 1.22432 0.93818 1.02097 1.00957 1.19174 0.85087 0.86671 0.99626 1.88135 1.19104 1.32345 1.87353 1.21950 0.82764 0.95107 0.99170 0.89355 1.22259 1.02121 1.02532 0.96106 1.20246 0.82935 0.90022 0.77015 1.90733 1.50082 1.50131 1.48468 1.45996 1.06602 1.10933 1.73411 1.21019 0.96183 0.81891 0.96051 0.89239 1.22137 1.01922 1.02321 0.95468 1.23565 0.94286 1.00202 0.97986 1.22330 0.93242 0.92443 0.92049 1.46196 1.33611 1.25709 1.29705 1.20127 1.05993 1.01211 1.15844 0.90112 1.25792 0.97527 0.96434 1.02578 1.70903 1.12304 1.41091 1.33074 0.83794 0.75466 0.76178 0.75340 1.22014 1.20705 1.22231 1.22644 0.95368 0.93031 0.90225 0.76102 0.90668 0.90588 0.90797 0.91216 0.90410 0.76659 0.92516 0.92460 0.91197 0.88286 0.93911 0.94755 0.92888 0.93556 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.19 -1.96 13.73 -37.12 -0.51 -2.47 16 3 C 0.17 1.44 6.22 34.37 0.21 1.66 16 4 O -0.35 -4.22 9.48 -55.09 -0.52 -4.74 16 5 C 0.07 0.68 3.13 -27.88 -0.09 0.59 16 6 H 0.09 0.54 7.79 -51.93 -0.40 0.14 16 7 C -0.17 -1.34 9.48 37.16 0.35 -0.99 16 8 C 0.51 6.71 7.14 -10.99 -0.08 6.63 16 9 O -0.52 -9.30 16.17 -14.30 -0.23 -9.53 16 10 N -0.72 -8.15 4.91 -53.81 -0.26 -8.42 16 11 C 0.15 2.11 2.34 -67.93 -0.16 1.95 16 12 H 0.09 1.45 7.42 -51.93 -0.39 1.07 16 13 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 14 C -0.14 -2.24 3.52 -89.97 -0.32 -2.55 16 15 C 0.13 2.38 8.13 -8.52 -0.07 2.31 16 16 N -0.62 -15.24 3.62 -184.61 -0.67 -15.90 16 17 C -0.31 -8.81 11.03 -15.06 -0.17 -8.97 16 18 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 19 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 20 N -0.93 -29.47 13.70 55.49 0.76 -28.71 16 21 Si 1.06 26.72 25.50 -169.99 -4.34 22.38 16 22 H -0.29 -7.00 6.97 56.52 0.39 -6.60 16 23 H -0.28 -6.61 5.66 56.52 0.32 -6.29 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 C 0.11 2.34 5.17 -8.38 -0.04 2.29 16 26 H 0.22 1.05 7.80 -54.08 -0.42 0.63 16 27 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 32 H 0.40 3.39 8.38 -40.82 -0.34 3.04 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 40 H 0.05 0.96 6.88 -51.93 -0.36 0.60 16 41 H 0.05 1.13 6.22 -51.93 -0.32 0.81 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -36.87 347.24 -6.57 -43.45 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.50 Total: -0.85 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.04 Total: -2.90 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.17 Total: -53.03 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.75 Total: -14.28 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -4.34 Total: 22.38 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.87 -6.57 -43.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675311708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.439 kcal (2) G-P(sol) polarization free energy of solvation -36.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds