Wall clock time and date at job start Tue Mar 31 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47248 * 199.22635 * 3 2 1 5 5 C 1.42894 * 114.00285 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47360 * 30.00498 * 5 4 3 7 7 C 1.53007 * 109.47478 * 270.00767 * 5 4 3 8 8 C 1.50706 * 109.47353 * 150.00338 * 5 4 3 9 9 O 1.21278 * 119.99561 * 5.00444 * 8 5 4 10 10 N 1.34768 * 119.99924 * 185.00336 * 8 5 4 11 11 C 1.46500 * 119.99743 * 180.02562 * 10 8 5 12 12 H 1.09000 * 109.47659 * 34.99804 * 11 10 8 13 13 C 1.53001 * 109.46866 * 274.99573 * 11 10 8 14 14 C 1.53000 * 109.47093 * 154.99920 * 11 10 8 15 15 C 1.53491 * 114.20581 * 295.13283 * 14 11 10 16 16 N 1.47068 * 87.98931 * 220.34690 * 15 14 11 17 17 C 1.36930 * 136.05760 * 207.08613 * 16 15 14 18 18 H 1.08000 * 120.00754 * 7.80142 * 17 16 15 19 19 C 1.38819 * 119.99891 * 187.79765 * 17 16 15 20 20 N 1.31612 * 120.00087 * 195.16184 * 19 17 16 21 21 Si 1.86804 * 119.99669 * 15.17022 * 19 17 16 22 22 H 1.48506 * 109.46509 * 269.99501 * 21 19 17 23 23 H 1.48495 * 109.47485 * 29.99346 * 21 19 17 24 24 H 1.48502 * 109.47078 * 149.99935 * 21 19 17 25 25 C 1.47064 * 87.88132 * 27.34445 * 16 15 14 26 26 H 4.38452 * 5.44420 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.46825 * 79.23182 * 3 2 1 28 28 H 1.09001 * 109.47332 * 319.23338 * 3 2 1 29 29 H 1.08999 * 109.46753 * 299.99672 * 7 5 4 30 30 H 1.09002 * 109.47187 * 59.99289 * 7 5 4 31 31 H 1.08993 * 109.47020 * 180.02562 * 7 5 4 32 32 H 0.96998 * 120.00911 * 359.97438 * 10 8 5 33 33 H 1.09001 * 109.47388 * 304.84112 * 13 11 10 34 34 H 1.08999 * 109.47241 * 64.84153 * 13 11 10 35 35 H 1.09000 * 109.47347 * 184.83771 * 13 11 10 36 36 H 1.09004 * 113.41670 * 68.34300 * 14 11 10 37 37 H 1.09006 * 113.46406 * 105.56897 * 15 14 11 38 38 H 1.08994 * 113.52589 * 335.14228 * 15 14 11 39 39 H 0.96996 * 120.00085 * 354.94044 * 20 19 17 40 40 H 1.09003 * 113.47092 * 87.43493 * 25 16 15 41 41 H 1.09006 * 113.46815 * 217.87607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.2730 0.4436 5 6 4.5462 1.3804 0.4803 6 1 4.9788 0.7394 -0.2879 7 6 5.0555 0.9433 1.8553 8 6 4.9489 2.8103 0.2266 9 8 4.0999 3.6702 0.1238 10 7 6.2524 3.1334 0.1140 11 6 6.6439 4.5235 -0.1320 12 1 5.9572 5.1918 0.3876 13 6 6.5945 4.8090 -1.6343 14 6 8.0660 4.7519 0.3840 15 6 8.2140 4.6097 1.9051 16 7 9.1152 5.7715 1.8740 17 6 10.1572 6.2317 2.6338 18 1 10.5632 5.6163 3.4231 19 6 10.6920 7.4892 2.3897 20 7 11.8609 7.8173 2.8978 21 14 9.7522 8.7160 1.3402 22 1 10.1396 8.5481 -0.0836 23 1 8.2938 8.4788 1.4877 24 1 10.0766 10.0962 1.7820 25 6 8.4004 6.2249 0.6714 26 1 -1.0502 -0.0004 0.0000 27 1 3.0094 -0.1912 -1.0096 28 1 3.0097 -0.7775 0.6710 29 1 4.6230 1.5843 2.6235 30 1 4.7642 -0.0909 2.0388 31 1 6.1420 1.0257 1.8833 32 1 6.9316 2.4458 0.1966 33 1 7.2152 4.0850 -2.1623 34 1 5.5657 4.7300 -1.9855 35 1 6.9674 5.8152 -1.8255 36 1 8.8256 4.2217 -0.1905 37 1 8.7069 3.6861 2.2088 38 1 7.2886 4.7926 2.4513 39 1 12.3149 7.2094 3.5021 40 1 7.5236 6.8340 0.8913 41 1 9.0520 6.6775 -0.0761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675311708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:10 Heat of formation + Delta-G solvation = 7.054969 kcal Electronic energy + Delta-G solvation = -21732.462318 eV Core-core repulsion = 18422.412513 eV Total energy + Delta-G solvation = -3310.049805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.33296 -40.22495 -38.80369 -36.26357 -34.59194 -34.39112 -32.92572 -31.13082 -29.54620 -28.06274 -26.90236 -25.84092 -24.82164 -22.51254 -21.47619 -21.06004 -19.64352 -19.51287 -18.27311 -17.98637 -17.25259 -16.89425 -16.46347 -16.12407 -15.95130 -15.64524 -15.33151 -15.12680 -14.73429 -14.40255 -13.95221 -13.66824 -13.56061 -13.28720 -13.16441 -13.10899 -13.02738 -12.62088 -12.45070 -12.36606 -11.81045 -11.72001 -11.70222 -11.55771 -11.49532 -11.05397 -10.88961 -10.79711 -10.42042 -10.07412 -9.24484 -8.61912 -5.46633 1.35974 1.39438 1.51725 1.60710 1.65827 1.81718 2.08764 2.52753 3.01688 3.04017 3.16040 3.45899 3.63825 3.77668 3.86601 3.95792 4.06277 4.22561 4.26990 4.31873 4.48355 4.49636 4.63200 4.66798 4.72193 4.77134 4.80013 4.81496 4.88037 5.01600 5.05865 5.21054 5.24186 5.31071 5.45720 5.53404 5.95824 6.02395 6.59339 6.61622 6.70087 7.28194 7.33492 8.28649 8.89416 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.003254 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.386161 B = 8603.161534 C = 8955.744255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.238 4.238 3 C 0.164 3.836 4 O -0.389 6.389 5 C 0.075 3.925 6 H 0.131 0.869 7 C -0.169 4.169 8 C 0.510 3.490 9 O -0.576 6.576 10 N -0.703 5.703 11 C 0.161 3.839 12 H 0.063 0.937 13 C -0.155 4.155 14 C -0.101 4.101 15 C 0.124 3.876 16 N -0.658 5.658 17 C -0.292 4.292 18 H 0.051 0.949 19 C -0.084 4.084 20 N -0.968 5.968 21 Si 1.099 2.901 22 H -0.270 1.270 23 H -0.260 1.260 24 H -0.304 1.304 25 C 0.102 3.898 26 H 0.251 0.749 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.417 0.583 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.247 0.753 40 H 0.048 0.952 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 -20.422 -10.513 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.238 4.238 3 C 0.089 3.911 4 O -0.308 6.308 5 C 0.015 3.985 6 H 0.148 0.852 7 C -0.226 4.226 8 C 0.296 3.704 9 O -0.454 6.454 10 N -0.356 5.356 11 C 0.055 3.945 12 H 0.081 0.919 13 C -0.213 4.213 14 C -0.121 4.121 15 C -0.001 4.001 16 N -0.386 5.386 17 C -0.419 4.419 18 H 0.068 0.932 19 C -0.277 4.277 20 N -0.614 5.614 21 Si 0.924 3.076 22 H -0.196 1.196 23 H -0.185 1.185 24 H -0.232 1.232 25 C -0.024 4.024 26 H 0.267 0.733 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.255 0.745 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.935 -18.112 -11.048 27.781 hybrid contribution 0.470 -1.494 1.486 2.159 sum -17.465 -19.606 -9.562 27.944 Atomic orbital electron populations 1.25875 0.96979 0.96459 0.99306 1.23219 0.95201 1.03296 1.02047 1.19481 0.84395 0.85901 1.01331 1.88082 1.20464 1.34483 1.87817 1.22065 0.82228 0.92936 1.01311 0.85161 1.22272 1.02928 1.03251 0.94190 1.20991 0.82537 0.91269 0.75582 1.90710 1.51605 1.52057 1.51054 1.45803 1.06872 1.10340 1.72603 1.20742 0.93881 0.82951 0.96889 0.91855 1.22085 1.01980 1.03160 0.94066 1.23244 0.96119 0.96705 0.96008 1.22517 0.92090 0.91053 0.94444 1.46327 1.33980 1.27668 1.30645 1.20000 1.06844 1.00466 1.14634 0.93152 1.27041 0.97752 0.98606 1.04254 1.71005 1.14051 1.41382 1.34932 0.83334 0.75526 0.73539 0.75198 1.19619 1.18472 1.23207 1.22859 0.94771 0.96085 0.88652 0.73306 0.88691 0.88056 0.93477 0.88850 0.88696 0.74511 0.90202 0.93245 0.91084 0.86070 0.92458 0.94745 0.94383 0.93443 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 19.25 74.32 1.43 -1.27 16 2 C -0.24 -4.53 13.73 31.12 0.43 -4.10 16 3 C 0.16 2.42 6.22 70.18 0.44 2.86 16 4 O -0.39 -8.76 9.48 -129.99 -1.23 -9.99 16 5 C 0.08 1.22 3.13 29.85 0.09 1.31 16 6 H 0.13 0.99 7.79 -2.39 -0.02 0.98 16 7 C -0.17 -2.15 9.48 71.98 0.68 -1.46 16 8 C 0.51 12.35 7.14 87.66 0.63 12.98 16 9 O -0.58 -20.45 16.17 15.97 0.26 -20.20 16 10 N -0.70 -13.86 4.91 -442.54 -2.17 -16.04 16 11 C 0.16 4.03 2.34 44.99 0.11 4.13 16 12 H 0.06 1.98 7.42 -2.39 -0.02 1.96 16 13 C -0.15 -3.35 9.48 71.98 0.68 -2.67 16 14 C -0.10 -2.91 3.52 -10.37 -0.04 -2.94 16 15 C 0.12 4.44 8.13 83.17 0.68 5.12 16 16 N -0.66 -31.38 3.62 -737.99 -2.67 -34.05 16 17 C -0.29 -17.01 11.03 84.04 0.93 -16.09 16 18 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 19 C -0.08 -5.08 5.50 84.86 0.47 -4.62 16 20 N -0.97 -62.97 13.70 21.65 0.30 -62.68 16 21 Si 1.10 53.73 25.50 68.60 1.75 55.48 16 22 H -0.27 -12.12 6.97 99.48 0.69 -11.43 16 23 H -0.26 -11.62 5.66 99.48 0.56 -11.06 16 24 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 25 C 0.10 3.96 5.17 83.26 0.43 4.39 16 26 H 0.25 1.88 7.80 -4.41 -0.03 1.85 16 27 H 0.10 0.95 8.08 -2.39 -0.02 0.93 16 28 H 0.10 0.90 7.87 -2.39 -0.02 0.88 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.76 7.87 -2.39 -0.02 0.74 16 31 H 0.09 0.86 7.92 -2.39 -0.02 0.84 16 32 H 0.42 5.28 8.38 -92.71 -0.78 4.50 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 40 H 0.05 1.87 6.88 -2.39 -0.02 1.85 16 41 H 0.05 2.09 6.22 -2.38 -0.01 2.07 16 Total: -1.00 -84.01 347.24 3.21 -80.80 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.04 Total: 9.03 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 6.95 Total: -2.37 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -4.55 Total: -112.77 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.97 Total: -30.19 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 1.75 Total: 55.48 kcal Total: -84.01 3.21 -80.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675311708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.855 kcal (2) G-P(sol) polarization free energy of solvation -84.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds