Wall clock time and date at job start Tue Mar 31 2020 01:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 114.00062 * 2 1 4 4 C 1.53002 * 109.47125 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47303 * 67.80735 * 4 3 2 6 6 C 1.46897 * 110.99873 * 158.20398 * 5 4 3 7 7 C 1.50693 * 109.47597 * 287.97683 * 6 5 4 8 8 H 1.08008 * 119.99674 * 3.54083 * 7 6 5 9 9 C 1.37874 * 120.00589 * 183.53961 * 7 6 5 10 10 N 1.31515 * 120.00504 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99756 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47071 * 89.99990 * 11 9 7 13 13 H 1.48495 * 109.47251 * 209.99864 * 11 9 7 14 14 H 1.48498 * 109.47154 * 330.00260 * 11 9 7 15 15 C 1.46898 * 111.00127 * 282.16098 * 5 4 3 16 16 C 1.50699 * 109.47215 * 166.71341 * 15 5 4 17 17 C 1.40194 * 120.36564 * 274.99925 * 16 15 5 18 18 C 1.35349 * 119.94678 * 180.02562 * 17 16 15 19 19 N 1.35765 * 120.70287 * 0.02562 * 18 17 16 20 20 C 1.46502 * 119.62352 * 179.97438 * 19 18 17 21 21 C 1.34657 * 120.75144 * 359.97438 * 19 18 17 22 22 O 1.22054 * 119.98499 * 179.97438 * 21 19 18 23 23 C 1.36403 * 120.36808 * 95.26268 * 16 15 5 24 24 H 1.08994 * 109.47668 * 300.00577 * 1 2 3 25 25 H 1.09006 * 109.46555 * 60.00395 * 1 2 3 26 26 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46740 * 59.99547 * 3 2 1 28 28 H 1.09000 * 109.46761 * 299.99838 * 3 2 1 29 29 H 1.09006 * 109.46750 * 307.80315 * 4 3 2 30 30 H 1.09001 * 109.46561 * 187.81337 * 4 3 2 31 31 H 1.09003 * 109.47038 * 47.97835 * 6 5 4 32 32 H 1.08998 * 109.47399 * 167.97219 * 6 5 4 33 33 H 0.96996 * 119.99808 * 179.97438 * 10 9 7 34 34 H 1.08999 * 109.47034 * 46.70772 * 15 5 4 35 35 H 1.09004 * 109.47154 * 286.71174 * 15 5 4 36 36 H 1.08001 * 120.02753 * 359.97246 * 17 16 15 37 37 H 1.07998 * 119.64490 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.46414 * 270.02014 * 20 19 18 39 39 H 1.09001 * 109.47093 * 30.01729 * 20 19 18 40 40 H 1.08996 * 109.46840 * 150.01896 * 20 19 18 41 41 H 1.08006 * 120.34665 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9829 0.6243 -1.2814 6 6 5.3898 0.9586 -1.5397 7 6 5.5046 2.4228 -1.8769 8 1 4.6298 3.0553 -1.8416 9 6 6.7263 2.9552 -2.2306 10 7 6.8263 4.2329 -2.5254 11 14 8.2394 1.8615 -2.2910 12 1 8.3774 1.2821 -3.6514 13 1 9.4454 2.6668 -1.9714 14 1 8.0983 0.7660 -1.2985 15 6 3.7706 -0.8286 -1.3236 16 6 3.9278 -1.3184 -2.7401 17 6 2.8453 -1.2728 -3.6299 18 6 2.9958 -1.7153 -4.9001 19 7 4.1876 -2.2062 -5.3266 20 6 4.3238 -2.6794 -6.7064 21 6 5.2458 -2.2630 -4.4958 22 8 6.3106 -2.7074 -4.8939 23 6 5.1232 -1.8158 -3.1692 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 3.8476 0.5282 0.8129 30 1 3.9780 2.1710 0.1404 31 1 5.9835 0.7427 -0.6514 32 1 5.7572 0.3633 -2.3757 33 1 7.6859 4.6075 -2.7738 34 1 2.7663 -1.0596 -0.9685 35 1 4.5039 -1.3217 -0.6853 36 1 1.8920 -0.8856 -3.3018 37 1 2.1585 -1.6783 -5.5814 38 1 4.0747 -3.7395 -6.7531 39 1 3.6475 -2.1184 -7.3514 40 1 5.3506 -2.5323 -7.0411 41 1 5.9675 -1.8626 -2.4973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072689608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:47 Heat of formation + Delta-G solvation = -33.160897 kcal Electronic energy + Delta-G solvation = -22615.396670 eV Core-core repulsion = 19303.602974 eV Total energy + Delta-G solvation = -3311.793696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00517 -38.24146 -36.92085 -36.25266 -34.26800 -32.42948 -30.12224 -29.39300 -28.76146 -26.95358 -26.15750 -24.47703 -23.34003 -22.11729 -21.30796 -19.80889 -17.19983 -17.15292 -16.83222 -16.30837 -15.86591 -15.78372 -15.63865 -15.05299 -14.41002 -14.18522 -14.03123 -13.87985 -13.45767 -13.07808 -12.84010 -12.59038 -12.35192 -12.11279 -11.85079 -11.64728 -11.56789 -11.40469 -11.24912 -11.02967 -10.81378 -10.49215 -10.26952 -9.85685 -9.64950 -9.48218 -9.32913 -9.22487 -8.52622 -7.67219 -7.40717 -6.03078 -3.99752 1.12865 2.19669 2.87784 3.35790 3.42488 3.47458 3.91030 4.01255 4.47133 4.69095 4.77149 4.83455 5.13316 5.21812 5.30035 5.31271 5.33395 5.40730 5.50391 5.60118 5.64929 5.65219 5.68866 5.72125 5.81426 5.97770 6.13216 6.25487 6.34336 6.38105 6.52653 6.80214 6.82676 6.88689 6.97957 7.31177 7.36242 7.64246 7.90955 8.00365 8.32538 8.66790 9.04452 9.59999 11.09772 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.008710 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.223825 B = 3213.943632 C = 5561.878166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.067 3.933 4 C 0.063 3.937 5 N -0.515 5.515 6 C 0.153 3.847 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.868 3.132 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.072 3.928 16 C 0.042 3.958 17 C -0.192 4.192 18 C 0.111 3.889 19 N -0.503 5.503 20 C 0.063 3.937 21 C 0.516 3.484 22 O -0.566 6.566 23 C -0.243 4.243 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.104 0.896 31 H -0.012 1.012 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.109 0.891 35 H 0.034 0.966 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 -11.709 -0.838 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.065 4.065 5 N -0.239 5.239 6 C 0.027 3.973 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.131 4.131 10 N -0.540 5.540 11 Si 0.695 3.305 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.056 4.056 16 C 0.037 3.963 17 C -0.216 4.216 18 C -0.014 4.014 19 N -0.215 5.215 20 C -0.079 4.079 21 C 0.319 3.681 22 O -0.450 6.450 23 C -0.266 4.266 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.122 0.878 31 H 0.006 0.994 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.391 -11.810 -1.553 17.922 hybrid contribution 1.139 -0.421 0.471 1.302 sum -12.252 -12.231 -1.082 17.346 Atomic orbital electron populations 1.22666 0.82237 1.01979 0.99662 1.87843 1.18757 1.29060 1.95240 1.22749 0.94374 0.83878 0.99975 1.22108 0.92198 1.01790 0.90377 1.61912 1.23544 1.07569 1.30890 1.20336 0.83357 0.98233 0.95371 1.20980 0.95943 0.91819 1.45687 0.90193 1.24850 0.98575 0.94801 0.94835 1.69885 1.25142 1.11937 1.47029 0.86968 0.83134 0.81037 0.79368 1.19954 1.21200 1.19165 1.21487 1.03069 0.90246 0.90766 1.20189 0.92024 0.87864 0.96191 1.20536 1.00941 1.07491 0.92584 1.21803 0.88043 0.94878 0.96711 1.45301 1.10802 1.52056 1.13327 1.22058 1.05119 1.00194 0.80558 1.17077 0.83091 0.81062 0.86845 1.90908 1.26306 1.50035 1.77722 1.22006 0.99586 1.09435 0.95541 0.94672 0.94235 0.90314 0.93708 0.92141 0.94975 0.87799 0.99412 0.94956 0.92717 0.87345 0.94822 0.83745 0.82473 0.91119 0.89999 0.89075 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.32 7.91 -35.23 -0.28 -5.60 16 3 C 0.07 0.97 6.25 37.16 0.23 1.21 16 4 C 0.06 1.13 5.35 -3.82 -0.02 1.11 16 5 N -0.52 -10.34 4.33 -237.52 -1.03 -11.37 16 6 C 0.15 3.71 3.63 -4.98 -0.02 3.69 16 7 C -0.51 -14.25 8.94 -34.44 -0.31 -14.56 16 8 H 0.08 2.41 7.86 -52.48 -0.41 2.00 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 11 Si 0.87 22.53 27.40 -169.99 -4.66 17.87 16 12 H -0.27 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.27 -6.70 6.64 56.52 0.38 -6.33 16 15 C 0.07 1.23 4.93 -4.98 -0.02 1.21 16 16 C 0.04 0.71 4.90 -104.55 -0.51 0.20 16 17 C -0.19 -2.66 9.73 -39.88 -0.39 -3.05 16 18 C 0.11 1.33 10.28 -16.84 -0.17 1.16 16 19 N -0.50 -7.28 2.99 -127.20 -0.38 -7.66 16 20 C 0.06 0.66 10.36 59.85 0.62 1.28 16 21 C 0.52 9.82 7.41 -15.45 -0.11 9.71 16 22 O -0.57 -12.54 16.64 4.87 0.08 -12.45 16 23 C -0.24 -4.61 8.07 -39.38 -0.32 -4.92 16 24 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.55 7.97 -51.93 -0.41 0.13 16 30 H 0.10 2.04 6.99 -51.93 -0.36 1.67 16 31 H -0.01 -0.29 7.36 -51.93 -0.38 -0.67 16 32 H 0.03 0.82 4.96 -51.93 -0.26 0.56 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.11 1.70 5.14 -51.93 -0.27 1.43 16 35 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 36 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.16 1.15 8.04 -52.49 -0.42 0.72 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 40 H 0.09 1.13 7.39 -51.93 -0.38 0.75 16 41 H 0.14 2.79 7.95 -52.48 -0.42 2.37 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -35.25 335.27 -6.72 -41.96 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.27 Total: -1.25 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.01 Total: 0.43 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.64 Total: -46.01 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.20 Total: -18.05 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.66 Total: 17.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.25 -6.72 -41.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072689608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.804 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds